Wall clock time and date at job start Tue Mar 31 2020 00:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46685 * 2 1 4 4 O 1.42891 * 109.47189 * 120.00149 * 2 1 3 5 5 N 1.41604 * 114.00030 * 155.00030 * 4 2 1 6 6 C 1.34770 * 120.00169 * 180.02562 * 5 4 2 7 7 O 1.21591 * 120.00052 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00154 * 179.97438 * 6 5 4 9 9 C 1.39949 * 120.00321 * 185.31529 * 8 6 5 10 10 C 1.38861 * 120.06903 * 33.26620 * 9 8 6 11 11 C 1.38116 * 119.93328 * 180.02562 * 10 9 8 12 12 C 1.38287 * 120.06466 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.92484 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46885 * 90.00657 * 13 12 11 15 15 H 1.07994 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99828 * 180.27270 * 14 13 12 17 17 N 1.31520 * 119.99931 * 179.72578 * 16 14 13 18 18 Si 1.86801 * 120.00306 * 359.72228 * 16 14 13 19 19 H 1.48494 * 109.47134 * 89.99950 * 18 16 14 20 20 H 1.48497 * 109.47044 * 210.00262 * 18 16 14 21 21 H 1.48500 * 109.46820 * 329.99953 * 18 16 14 22 22 C 1.38274 * 120.14273 * 0.23815 * 12 11 10 23 23 C 1.38122 * 120.06958 * 359.48491 * 22 12 11 24 24 H 1.09003 * 109.47162 * 299.99711 * 1 2 3 25 25 H 1.08998 * 109.47579 * 59.99662 * 1 2 3 26 26 H 1.08998 * 109.47242 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46731 * 240.00094 * 2 1 3 28 28 H 1.09001 * 109.46428 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47668 * 299.99984 * 3 2 1 30 30 H 1.08998 * 109.47459 * 60.00541 * 3 2 1 31 31 H 0.96995 * 119.99794 * 359.97438 * 5 4 2 32 32 H 0.96997 * 119.99690 * 5.31322 * 8 6 5 33 33 H 1.08005 * 120.03723 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.96795 * 180.02562 * 11 10 9 35 35 H 1.08998 * 109.47970 * 330.00567 * 13 12 11 36 36 H 1.09009 * 109.46993 * 210.00326 * 13 12 11 37 37 H 0.96997 * 119.99879 * 179.97438 * 17 16 14 38 38 H 1.07997 * 119.96757 * 179.71689 * 22 12 11 39 39 H 1.07994 * 120.04007 * 180.25147 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 1.1667 5 7 3.3037 -1.2232 1.0251 6 6 3.8707 -1.8858 2.0526 7 8 3.2684 -2.0113 3.1014 8 7 5.1053 -2.4093 1.9177 9 6 5.6495 -3.1915 2.9426 10 6 4.8238 -3.9943 3.7184 11 6 5.3638 -4.7648 4.7295 12 6 6.7253 -4.7369 4.9700 13 6 7.3111 -5.5784 6.0743 14 6 7.6899 -6.9310 5.5282 15 1 7.5228 -7.1585 4.4858 16 6 8.2443 -7.8800 6.3607 17 7 8.5699 -9.0622 5.8853 18 14 8.5329 -7.4866 8.1639 19 1 7.3297 -7.8589 8.9505 20 1 9.7039 -8.2552 8.6569 21 1 8.7945 -6.0329 8.3176 22 6 7.5496 -3.9344 4.2028 23 6 7.0164 -3.1659 3.1864 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9564 0.8900 31 1 3.7840 -1.1234 0.1884 32 1 5.6166 -2.2438 1.1102 33 1 3.7602 -4.0163 3.5314 34 1 4.7221 -5.3897 5.3330 35 1 6.5742 -5.7005 6.8681 36 1 8.1980 -5.0867 6.4744 37 1 8.9602 -9.7297 6.4709 38 1 8.6119 -3.9113 4.3960 39 1 7.6611 -2.5424 2.5849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932565246.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:54 Heat of formation + Delta-G solvation = -23.737959 kcal Electronic energy + Delta-G solvation = -20529.681554 eV Core-core repulsion = 17245.607946 eV Total energy + Delta-G solvation = -3284.073608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.61075 -39.87528 -38.83659 -36.26333 -35.05618 -34.57970 -32.82158 -31.75842 -31.50948 -28.55932 -28.15873 -24.88758 -23.84582 -22.78483 -22.61305 -21.54019 -19.63698 -19.37164 -18.93178 -18.02638 -16.98482 -16.62647 -16.24430 -15.94972 -15.90955 -15.45694 -15.09370 -14.85246 -14.54991 -14.33525 -14.26097 -13.90431 -13.51752 -13.36312 -13.22697 -13.16644 -12.87314 -12.49120 -12.26298 -12.04840 -11.84878 -11.83601 -11.78962 -11.63548 -11.32922 -10.99976 -10.75878 -10.03816 -9.73999 -8.79909 -8.26909 -6.31288 0.36258 0.58478 0.62161 1.39469 1.39998 1.52491 1.98413 2.38006 2.63648 3.01181 3.07412 3.52049 3.83027 3.96353 4.06199 4.12764 4.16988 4.34559 4.57042 4.66014 4.68326 4.69179 4.80815 4.82395 4.85532 5.08904 5.09966 5.17623 5.23965 5.25629 5.37436 5.43459 5.57699 5.61893 5.66458 5.95736 6.04295 6.18511 6.32557 6.74838 6.86481 7.31861 7.44621 8.89407 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049070 B = 0.002769 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.473114 B =10111.131770 C =10238.808075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 C -0.175 4.175 4 O -0.153 6.153 5 N -0.594 5.594 6 C 0.715 3.285 7 O -0.607 6.607 8 N -0.655 5.655 9 C 0.141 3.859 10 C -0.128 4.128 11 C -0.118 4.118 12 C -0.074 4.074 13 C 0.020 3.980 14 C -0.516 4.516 15 H 0.030 0.970 16 C 0.007 3.993 17 N -0.949 5.949 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.244 1.244 22 C -0.110 4.110 23 C -0.126 4.126 24 H 0.058 0.942 25 H 0.107 0.893 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.425 0.575 32 H 0.428 0.572 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.024 0.976 36 H 0.036 0.964 37 H 0.267 0.733 38 H 0.134 0.866 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 22.575 -16.308 29.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.013 4.013 3 C -0.232 4.232 4 O -0.157 6.157 5 N -0.300 5.300 6 C 0.415 3.585 7 O -0.485 6.485 8 N -0.308 5.308 9 C 0.047 3.953 10 C -0.149 4.149 11 C -0.137 4.137 12 C -0.075 4.075 13 C -0.017 4.017 14 C -0.554 4.554 15 H 0.048 0.952 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.772 3.228 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.167 1.167 22 C -0.129 4.129 23 C -0.147 4.147 24 H 0.077 0.923 25 H 0.125 0.875 26 H 0.079 0.921 27 H 0.118 0.882 28 H 0.079 0.921 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.268 0.732 32 H 0.267 0.733 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.152 0.848 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.927 22.362 -15.238 29.183 hybrid contribution 0.388 -0.396 -0.093 0.562 sum -10.539 21.966 -15.331 28.786 Atomic orbital electron populations 1.21873 0.90915 1.03339 1.04148 1.23018 0.96519 0.93460 0.88307 1.22350 1.01862 0.95424 1.03574 1.90656 1.14648 1.73668 1.36727 1.45807 1.09493 1.58913 1.15803 1.15478 0.81511 0.78481 0.82990 1.90964 1.64049 1.64555 1.28919 1.41929 1.15193 1.52607 1.21044 1.17315 0.92399 0.93570 0.91989 1.21029 0.99942 0.96535 0.97382 1.20946 0.94969 0.99230 0.98575 1.20171 0.93588 0.95767 0.97976 1.18656 0.96245 0.93336 0.93456 1.21171 1.40518 0.97393 0.96308 0.95151 1.25971 0.94709 0.94442 1.03900 1.70058 1.44581 1.06279 1.38062 0.85669 0.78172 0.79900 0.79023 1.19464 1.20747 1.16749 1.21037 1.00120 0.96299 0.95403 1.21013 0.92891 1.01583 0.99178 0.92312 0.87480 0.92114 0.88210 0.92071 0.88847 0.92848 0.73160 0.73283 0.86277 0.86875 0.95773 0.94571 0.92423 0.84783 0.81879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.56 71.98 0.69 -0.72 16 2 C 0.04 0.50 3.47 30.60 0.11 0.61 16 3 C -0.17 -1.56 9.56 71.98 0.69 -0.87 16 4 O -0.15 -3.32 10.75 -21.44 -0.23 -3.55 16 5 N -0.59 -11.07 6.38 -184.75 -1.18 -12.25 16 6 C 0.71 19.44 8.45 179.06 1.51 20.95 16 7 O -0.61 -23.56 14.43 13.35 0.19 -23.36 16 8 N -0.65 -14.60 5.35 -317.18 -1.70 -16.30 16 9 C 0.14 4.37 6.28 38.15 0.24 4.61 16 10 C -0.13 -4.86 8.65 22.39 0.19 -4.66 16 11 C -0.12 -4.96 9.69 22.25 0.22 -4.75 16 12 C -0.07 -3.22 5.07 -19.85 -0.10 -3.32 16 13 C 0.02 0.99 4.17 29.10 0.12 1.11 16 14 C -0.52 -30.29 9.65 25.60 0.25 -30.05 16 15 H 0.03 1.98 7.98 -2.91 -0.02 1.96 16 16 C 0.01 0.39 5.47 84.65 0.46 0.85 16 17 N -0.95 -60.01 13.96 21.45 0.30 -59.71 16 18 Si 0.95 44.61 27.46 68.60 1.88 46.50 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.24 -10.59 6.55 99.48 0.65 -9.94 16 22 C -0.11 -3.97 9.69 22.25 0.22 -3.76 16 23 C -0.13 -3.63 9.96 22.39 0.22 -3.41 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.10 0.65 7.94 -2.39 -0.02 0.63 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.42 3.70 8.45 -92.71 -0.78 2.92 16 32 H 0.43 5.17 8.83 -92.71 -0.82 4.35 16 33 H 0.12 4.68 6.41 -2.91 -0.02 4.66 16 34 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 35 H 0.02 1.16 7.51 -2.39 -0.02 1.14 16 36 H 0.04 1.68 7.15 -2.38 -0.02 1.67 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 39 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -81.48 334.38 3.49 -77.98 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -0.59 Total: 14.09 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 4.81 Total: -23.39 kcal Atomic # 7 Polarization: -85.68 SS G_CDS: -2.58 Total: -88.26 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.04 Total: -26.92 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Total: -81.48 3.49 -77.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932565246.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.246 kcal (2) G-P(sol) polarization free energy of solvation -81.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds