Wall clock time and date at job start Tue Mar 31 2020 00:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70231 * 2 1 4 4 C 1.53621 * 109.66606 * 120.59545 * 2 1 3 5 5 C 1.53041 * 109.24376 * 174.54604 * 4 2 1 6 6 H 1.08996 * 109.45783 * 58.52911 * 5 4 2 7 7 N 1.46502 * 109.46018 * 178.49205 * 5 4 2 8 8 C 1.34775 * 119.99682 * 205.06836 * 7 5 4 9 9 O 1.21615 * 119.99949 * 0.02562 * 8 7 5 10 10 C 1.47374 * 119.99905 * 180.02562 * 8 7 5 11 11 C 1.47022 * 127.19092 * 179.70700 * 10 8 7 12 12 C 1.34180 * 105.95185 * 179.89143 * 11 10 8 13 13 O 1.34220 * 109.12564 * 0.37642 * 12 11 10 14 14 C 1.33647 * 110.90646 * 359.74887 * 13 12 11 15 15 C 1.53042 * 109.53755 * 298.51130 * 5 4 2 16 16 C 1.53197 * 109.31056 * 61.36512 * 15 5 4 17 17 N 1.46924 * 108.77415 * 305.36136 * 16 15 5 18 18 C 1.36943 * 120.62995 * 233.58592 * 17 16 15 19 19 H 1.07999 * 119.99741 * 150.98933 * 18 17 16 20 20 C 1.38811 * 119.99970 * 330.98603 * 18 17 16 21 21 N 1.31620 * 120.00262 * 344.98836 * 20 18 17 22 22 Si 1.86799 * 119.99624 * 164.98484 * 20 18 17 23 23 H 1.48499 * 109.46917 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47442 * 300.00072 * 22 20 18 25 25 H 1.48504 * 109.47236 * 60.00138 * 22 20 18 26 26 H 1.08997 * 109.47317 * 180.35312 * 1 2 3 27 27 H 1.09002 * 109.46620 * 300.35165 * 1 2 3 28 28 H 1.08999 * 109.47059 * 60.35252 * 1 2 3 29 29 H 1.09011 * 109.63268 * 54.55890 * 4 2 1 30 30 H 1.08992 * 109.43154 * 294.41829 * 4 2 1 31 31 H 0.96995 * 120.00029 * 25.07392 * 7 5 4 32 32 H 1.07997 * 127.03029 * 0.02562 * 11 10 8 33 33 H 1.08001 * 125.44204 * 180.12412 * 12 11 10 34 34 H 1.08000 * 125.80132 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.49938 * 301.41676 * 15 5 4 36 36 H 1.09004 * 109.52569 * 181.32617 * 15 5 4 37 37 H 1.09003 * 109.58227 * 185.57834 * 16 15 5 38 38 H 1.08997 * 109.58750 * 65.15334 * 16 15 5 39 39 H 0.97000 * 120.00257 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8499 1.1675 6 1 4.0066 0.1470 1.0989 7 7 4.0727 -1.5196 2.3701 8 6 5.3364 -1.3021 2.7851 9 8 6.0602 -0.5496 2.1615 10 6 5.8411 -1.9762 3.9946 11 6 7.1838 -1.8598 4.5821 12 6 7.1804 -2.6470 5.6687 13 8 5.9764 -3.2285 5.7867 14 6 5.1619 -2.8432 4.7996 15 6 3.9615 -1.6628 -0.0690 16 6 3.4656 -0.9419 -1.3265 17 7 2.0225 -0.6995 -1.1945 18 6 1.1536 -1.1126 -2.1691 19 1 0.1371 -1.3711 -1.9119 20 6 1.5795 -1.1990 -3.4874 21 7 2.7005 -0.6163 -3.8565 22 14 0.5617 -2.1426 -4.7377 23 1 1.2287 -2.0855 -6.0632 24 1 0.4370 -3.5583 -4.3074 25 1 -0.7895 -1.5344 -4.8363 26 1 -0.3634 -1.0276 0.0063 27 1 -0.3633 0.5193 0.8869 28 1 -0.3633 0.5083 -0.8931 29 1 1.6096 -1.7338 1.2888 30 1 1.7689 -0.1772 2.1386 31 1 3.4953 -2.1195 2.8676 32 1 8.0045 -1.2612 4.2154 33 1 8.0146 -2.7929 6.3389 34 1 4.1399 -3.1641 4.6624 35 1 3.5060 -2.6515 -0.0130 36 1 5.0460 -1.7636 -0.1114 37 1 3.6531 -1.5637 -2.2020 38 1 3.9877 0.0090 -1.4325 39 1 2.9983 -0.6770 -4.7777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947060757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:03 Heat of formation + Delta-G solvation = -2.948479 kcal Electronic energy + Delta-G solvation = -21714.302534 eV Core-core repulsion = 18431.130426 eV Total energy + Delta-G solvation = -3283.172108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69162 -39.49292 -37.55053 -34.56903 -33.06630 -32.36742 -31.37091 -30.12954 -29.13587 -26.38445 -25.00578 -23.62148 -21.96344 -21.59950 -20.77056 -19.92400 -19.30267 -18.34722 -16.44016 -16.30752 -16.06812 -15.68572 -15.09992 -14.81025 -14.47653 -13.93051 -13.68658 -13.40254 -13.28559 -13.06739 -12.81292 -12.68560 -12.48997 -11.59247 -11.21841 -11.09066 -10.92288 -10.88188 -10.64195 -10.33028 -10.14457 -10.04247 -9.95740 -9.88831 -9.72221 -9.37376 -9.02692 -8.68938 -8.40224 -6.63113 -5.75359 -3.19834 1.22917 1.93375 2.72357 3.32420 3.39615 3.45387 3.45704 3.47209 4.40868 4.50235 4.55957 4.93979 5.24824 5.35866 5.39568 5.45722 5.49628 5.60045 5.72194 5.77710 6.00662 6.10566 6.15601 6.25556 6.31787 6.42668 6.43643 6.51854 6.65645 6.74598 6.81788 6.90871 7.03701 7.10269 7.40700 7.69441 7.73850 7.83257 8.40950 8.48658 9.23944 9.87548 10.44584 11.33065 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.003795 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.324670 B = 7376.622269 C = 7644.591367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.028 0.972 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.082 0.918 7 N -0.720 5.720 8 C 0.580 3.420 9 O -0.535 6.535 10 C -0.228 4.228 11 C -0.165 4.165 12 C -0.045 4.045 13 O -0.177 6.177 14 C 0.015 3.985 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.252 4.252 19 H 0.070 0.930 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.291 1.291 24 H -0.285 1.285 25 H -0.283 1.283 26 H 0.053 0.947 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.391 0.609 32 H 0.159 0.841 33 H 0.208 0.792 34 H 0.211 0.789 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.020 0.980 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -4.588 18.382 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.101 0.899 7 N -0.370 5.370 8 C 0.367 3.633 9 O -0.413 6.413 10 C -0.233 4.233 11 C -0.185 4.185 12 C -0.111 4.111 13 O -0.072 6.072 14 C -0.056 4.056 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.311 5.311 18 C -0.382 4.382 19 H 0.087 0.913 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.217 1.217 24 H -0.211 1.211 25 H -0.209 1.209 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.225 0.775 32 H 0.177 0.823 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.038 0.962 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.247 -4.209 17.953 18.923 hybrid contribution -0.583 -0.676 -0.606 1.079 sum 3.664 -4.885 17.347 18.390 Atomic orbital electron populations 1.21787 0.95742 1.01360 1.00370 1.20449 0.93049 0.93546 0.86628 0.95478 1.22459 0.93596 1.01611 0.99715 1.21073 0.94208 0.96802 0.83084 0.89950 1.46188 1.12863 1.48426 1.29533 1.17289 0.81922 0.81129 0.82961 1.90799 1.56535 1.37137 1.56799 1.21719 0.96273 1.05070 1.00189 1.22828 0.96992 1.02503 0.96161 1.23930 0.87183 0.98830 1.01132 1.83778 1.21653 1.57357 1.44423 1.24446 0.96267 0.97140 0.87711 1.22579 0.99787 0.99586 0.96756 1.20763 0.83142 0.97333 0.93942 1.44188 1.02958 1.64920 1.19062 1.19134 0.94939 1.37906 0.86222 0.91259 1.25102 0.97833 0.99670 0.96991 1.70005 1.23431 1.44320 1.16939 0.86394 0.79621 0.80114 0.80744 1.21687 1.21106 1.20929 0.92796 0.94310 0.91826 0.91788 0.92700 0.77538 0.82331 0.77568 0.77291 0.92681 0.92860 0.89122 0.96165 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 7.95 37.16 0.30 -2.16 16 2 C 0.17 3.46 3.51 -67.37 -0.24 3.22 16 3 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 4 C -0.13 -2.21 4.86 -26.39 -0.13 -2.34 16 5 C 0.15 2.66 2.41 -67.89 -0.16 2.49 16 6 H 0.08 1.64 7.57 -51.93 -0.39 1.25 16 7 N -0.72 -10.27 5.07 -54.86 -0.28 -10.55 16 8 C 0.58 9.22 7.78 -12.54 -0.10 9.13 16 9 O -0.54 -10.83 16.64 5.26 0.09 -10.74 16 10 C -0.23 -2.86 6.31 -103.28 -0.65 -3.51 16 11 C -0.17 -1.85 11.01 -37.45 -0.41 -2.26 16 12 C -0.04 -0.38 12.03 29.30 0.35 -0.02 16 13 O -0.18 -1.65 10.52 7.65 0.08 -1.57 16 14 C 0.01 0.13 11.61 30.08 0.35 0.48 16 15 C -0.15 -2.95 5.65 -26.61 -0.15 -3.10 16 16 C 0.17 4.24 5.28 -3.71 -0.02 4.22 16 17 N -0.59 -14.37 2.99 -164.52 -0.49 -14.86 16 18 C -0.25 -6.70 8.59 -15.06 -0.13 -6.83 16 19 H 0.07 1.78 6.22 -52.49 -0.33 1.45 16 20 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 21 N -0.90 -26.21 11.14 55.49 0.62 -25.59 16 22 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H 0.05 0.98 7.44 -51.93 -0.39 0.59 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.26 7.62 -51.93 -0.40 0.87 16 29 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.39 4.18 7.57 -40.82 -0.31 3.87 16 32 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 33 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.21 1.13 7.47 -52.49 -0.39 0.74 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.09 2.46 6.06 -51.93 -0.31 2.15 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -32.96 320.62 -6.72 -39.68 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.46 Total: 3.00 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.08 Total: -0.69 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.15 Total: -51.00 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.17 Total: -12.30 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.96 -6.72 -39.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947060757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.727 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds