Wall clock time and date at job start Tue Mar 31 2020 00:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70231 * 2 1 4 4 C 1.53621 * 109.66606 * 120.59545 * 2 1 3 5 5 C 1.53041 * 109.24376 * 174.54604 * 4 2 1 6 6 H 1.08996 * 109.45783 * 58.52911 * 5 4 2 7 7 N 1.46502 * 109.46018 * 178.49205 * 5 4 2 8 8 C 1.34775 * 119.99682 * 205.06836 * 7 5 4 9 9 O 1.21615 * 119.99949 * 0.02562 * 8 7 5 10 10 C 1.47374 * 119.99905 * 180.02562 * 8 7 5 11 11 C 1.47022 * 127.19092 * 179.70700 * 10 8 7 12 12 C 1.34180 * 105.95185 * 179.89143 * 11 10 8 13 13 O 1.34220 * 109.12564 * 0.37642 * 12 11 10 14 14 C 1.33647 * 110.90646 * 359.74887 * 13 12 11 15 15 C 1.53042 * 109.53755 * 298.51130 * 5 4 2 16 16 C 1.53197 * 109.31056 * 61.36512 * 15 5 4 17 17 N 1.46924 * 108.77415 * 305.36136 * 16 15 5 18 18 C 1.36943 * 120.62995 * 233.58592 * 17 16 15 19 19 H 1.07999 * 119.99741 * 150.98933 * 18 17 16 20 20 C 1.38811 * 119.99970 * 330.98603 * 18 17 16 21 21 N 1.31620 * 120.00262 * 344.98836 * 20 18 17 22 22 Si 1.86799 * 119.99624 * 164.98484 * 20 18 17 23 23 H 1.48499 * 109.46917 * 180.02562 * 22 20 18 24 24 H 1.48495 * 109.47442 * 300.00072 * 22 20 18 25 25 H 1.48504 * 109.47236 * 60.00138 * 22 20 18 26 26 H 1.08997 * 109.47317 * 180.35312 * 1 2 3 27 27 H 1.09002 * 109.46620 * 300.35165 * 1 2 3 28 28 H 1.08999 * 109.47059 * 60.35252 * 1 2 3 29 29 H 1.09011 * 109.63268 * 54.55890 * 4 2 1 30 30 H 1.08992 * 109.43154 * 294.41829 * 4 2 1 31 31 H 0.96995 * 120.00029 * 25.07392 * 7 5 4 32 32 H 1.07997 * 127.03029 * 0.02562 * 11 10 8 33 33 H 1.08001 * 125.44204 * 180.12412 * 12 11 10 34 34 H 1.08000 * 125.80132 * 179.97438 * 14 13 12 35 35 H 1.08998 * 109.49938 * 301.41676 * 15 5 4 36 36 H 1.09004 * 109.52569 * 181.32617 * 15 5 4 37 37 H 1.09003 * 109.58227 * 185.57834 * 16 15 5 38 38 H 1.08997 * 109.58750 * 65.15334 * 16 15 5 39 39 H 0.97000 * 120.00257 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 6 3.5712 -0.8499 1.1675 6 1 4.0066 0.1470 1.0989 7 7 4.0727 -1.5196 2.3701 8 6 5.3364 -1.3021 2.7851 9 8 6.0602 -0.5496 2.1615 10 6 5.8411 -1.9762 3.9946 11 6 7.1838 -1.8598 4.5821 12 6 7.1804 -2.6470 5.6687 13 8 5.9764 -3.2285 5.7867 14 6 5.1619 -2.8432 4.7996 15 6 3.9615 -1.6628 -0.0690 16 6 3.4656 -0.9419 -1.3265 17 7 2.0225 -0.6995 -1.1945 18 6 1.1536 -1.1126 -2.1691 19 1 0.1371 -1.3711 -1.9119 20 6 1.5795 -1.1990 -3.4874 21 7 2.7005 -0.6163 -3.8565 22 14 0.5617 -2.1426 -4.7377 23 1 1.2287 -2.0855 -6.0632 24 1 0.4370 -3.5583 -4.3074 25 1 -0.7895 -1.5344 -4.8363 26 1 -0.3634 -1.0276 0.0063 27 1 -0.3633 0.5193 0.8869 28 1 -0.3633 0.5083 -0.8931 29 1 1.6096 -1.7338 1.2888 30 1 1.7689 -0.1772 2.1386 31 1 3.4953 -2.1195 2.8676 32 1 8.0045 -1.2612 4.2154 33 1 8.0146 -2.7929 6.3389 34 1 4.1399 -3.1641 4.6624 35 1 3.5060 -2.6515 -0.0130 36 1 5.0460 -1.7636 -0.1114 37 1 3.6531 -1.5637 -2.2020 38 1 3.9877 0.0090 -1.4325 39 1 2.9983 -0.6770 -4.7777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947060757.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:02 Heat of formation + Delta-G solvation = -25.878161 kcal Electronic energy + Delta-G solvation = -21715.296840 eV Core-core repulsion = 18431.130426 eV Total energy + Delta-G solvation = -3284.166414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.44620 -40.84475 -39.15914 -36.12514 -34.31081 -33.85524 -32.89377 -31.51141 -30.36834 -27.97571 -26.75733 -24.89206 -23.61295 -22.39354 -22.19041 -21.31552 -20.72630 -19.34199 -18.25547 -17.25884 -17.18196 -17.06079 -16.66033 -15.87686 -15.77259 -15.66184 -15.41179 -14.94600 -14.61182 -14.43850 -14.28381 -13.83307 -13.35185 -13.30245 -12.92710 -12.71836 -12.67250 -12.60539 -12.35268 -12.11116 -11.86001 -11.72054 -11.51281 -11.39510 -10.98306 -10.84015 -10.53818 -10.07186 -9.70603 -8.64658 -7.82503 -5.29692 0.38775 1.14926 1.48606 1.50972 1.57326 2.01038 2.19641 2.34958 2.53867 3.33644 3.58142 3.66351 3.79959 3.87414 4.06505 4.15949 4.26548 4.39306 4.56071 4.61356 4.71552 4.75581 4.77628 4.84952 4.95669 5.04367 5.07892 5.10508 5.16811 5.33498 5.38916 5.48110 5.55210 5.56828 5.71473 5.73547 6.00823 6.43771 6.58699 7.17656 7.24577 7.89601 8.42670 9.24675 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031727 B = 0.003795 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.324670 B = 7376.622269 C = 7644.591367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.010 0.990 4 C -0.116 4.116 5 C 0.162 3.838 6 H 0.053 0.947 7 N -0.703 5.703 8 C 0.579 3.421 9 O -0.592 6.592 10 C -0.270 4.270 11 C -0.203 4.203 12 C -0.020 4.020 13 O -0.175 6.175 14 C 0.048 3.952 15 C -0.130 4.130 16 C 0.183 3.817 17 N -0.603 5.603 18 C -0.250 4.250 19 H 0.083 0.917 20 C -0.058 4.058 21 N -0.943 5.943 22 Si 0.966 3.034 23 H -0.301 1.301 24 H -0.276 1.276 25 H -0.273 1.273 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.414 0.586 32 H 0.149 0.851 33 H 0.249 0.751 34 H 0.251 0.749 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.056 0.944 38 H -0.016 1.016 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.879 -6.600 21.745 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.051 3.949 3 H 0.027 0.973 4 C -0.156 4.156 5 C 0.057 3.943 6 H 0.071 0.929 7 N -0.354 5.354 8 C 0.368 3.632 9 O -0.474 6.474 10 C -0.275 4.275 11 C -0.223 4.223 12 C -0.085 4.085 13 O -0.069 6.069 14 C -0.022 4.022 15 C -0.171 4.171 16 C 0.056 3.944 17 N -0.327 5.327 18 C -0.380 4.380 19 H 0.100 0.900 20 C -0.252 4.252 21 N -0.589 5.589 22 Si 0.794 3.206 23 H -0.228 1.228 24 H -0.202 1.202 25 H -0.199 1.199 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.252 0.748 32 H 0.167 0.833 33 H 0.265 0.735 34 H 0.267 0.733 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.003 0.997 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.345 -6.254 21.387 22.406 hybrid contribution 0.028 -0.016 -1.561 1.561 sum 2.373 -6.270 19.827 20.929 Atomic orbital electron populations 1.21702 0.93654 1.01832 1.01146 1.20754 0.94841 0.92789 0.86490 0.97274 1.22259 0.91941 1.02484 0.98894 1.20683 0.95216 0.95072 0.83296 0.92888 1.45823 1.12878 1.48338 1.28348 1.17808 0.81617 0.80284 0.83452 1.90771 1.58000 1.39786 1.58821 1.21533 0.97845 1.07743 1.00371 1.22963 0.96857 1.04507 0.97960 1.24582 0.87461 0.96421 1.00062 1.83843 1.21950 1.57007 1.44096 1.25085 0.97130 0.94264 0.85718 1.22313 0.98801 0.99763 0.96181 1.20447 0.83725 0.95355 0.94833 1.44449 1.02488 1.65631 1.20119 1.19556 0.95510 1.36352 0.86610 0.89994 1.25899 0.99092 1.01151 0.99088 1.70197 1.25519 1.46508 1.16712 0.85363 0.78285 0.79082 0.77865 1.22771 1.20227 1.19886 0.92387 0.90358 0.94247 0.90110 0.89076 0.74835 0.83315 0.73527 0.73278 0.91686 0.94144 0.92527 0.99743 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 7.95 71.98 0.57 -3.69 16 2 C 0.16 6.22 3.51 45.12 0.16 6.38 16 3 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 4 C -0.12 -3.51 4.86 30.82 0.15 -3.36 16 5 C 0.16 5.59 2.41 45.02 0.11 5.70 16 6 H 0.05 2.18 7.57 -2.39 -0.02 2.16 16 7 N -0.70 -18.71 5.07 -445.72 -2.26 -20.97 16 8 C 0.58 18.24 7.78 86.65 0.67 18.91 16 9 O -0.59 -25.06 16.64 -4.08 -0.07 -25.12 16 10 C -0.27 -6.36 6.31 -18.99 -0.12 -6.48 16 11 C -0.20 -4.35 11.01 23.65 0.26 -4.09 16 12 C -0.02 -0.27 12.03 66.89 0.80 0.53 16 13 O -0.17 -2.52 10.52 4.47 0.05 -2.47 16 14 C 0.05 0.70 11.61 67.40 0.78 1.49 16 15 C -0.13 -5.35 5.65 30.67 0.17 -5.18 16 16 C 0.18 9.37 5.28 86.36 0.46 9.83 16 17 N -0.60 -29.92 2.99 -674.41 -2.01 -31.93 16 18 C -0.25 -13.33 8.59 84.03 0.72 -12.61 16 19 H 0.08 4.10 6.22 -2.91 -0.02 4.08 16 20 C -0.06 -3.24 4.96 84.86 0.42 -2.82 16 21 N -0.94 -57.32 11.14 21.65 0.24 -57.08 16 22 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.06 1.91 7.44 -2.39 -0.02 1.89 16 27 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.04 1.50 7.62 -2.39 -0.02 1.49 16 29 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.41 7.18 7.57 -92.71 -0.70 6.47 16 32 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.25 1.04 8.06 -2.91 -0.02 1.01 16 34 H 0.25 1.25 7.47 -2.91 -0.02 1.23 16 35 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.06 3.26 6.06 -2.39 -0.01 3.25 16 38 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 39 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -77.39 320.62 3.50 -73.89 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.36 Total: 12.17 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 5.16 Total: 4.62 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.03 Total: -109.98 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.02 Total: -27.59 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -77.39 3.50 -73.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947060757.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.010 kcal (2) G-P(sol) polarization free energy of solvation -77.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds