Wall clock time and date at job start Tue Mar 31 2020 00:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.45248 * 2 1 4 4 C 1.53046 * 109.46221 * 119.96767 * 2 1 3 5 5 C 1.53190 * 109.31320 * 181.38479 * 4 2 1 6 6 N 1.46922 * 108.77841 * 305.36300 * 5 4 2 7 7 C 1.36934 * 120.63560 * 233.60942 * 6 5 4 8 8 H 1.08005 * 119.99390 * 27.67745 * 7 6 5 9 9 C 1.38812 * 120.00065 * 207.68071 * 7 6 5 10 10 N 1.31612 * 120.00557 * 17.36280 * 9 7 6 11 11 Si 1.86805 * 119.99605 * 197.36448 * 9 7 6 12 12 H 1.48501 * 109.47283 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47344 * 120.00118 * 11 9 7 14 14 H 1.48501 * 109.46867 * 240.00126 * 11 9 7 15 15 C 1.46944 * 118.76080 * 53.58972 * 6 5 4 16 16 C 1.53043 * 109.46196 * 240.03760 * 2 1 3 17 17 H 1.09000 * 109.49498 * 298.59788 * 16 2 1 18 18 N 1.46493 * 109.49734 * 58.66088 * 16 2 1 19 19 C 1.34778 * 119.99874 * 204.93650 * 18 16 2 20 20 O 1.21693 * 120.00298 * 0.02562 * 19 18 16 21 21 C 1.46657 * 119.99853 * 180.27280 * 19 18 16 22 22 C 1.36542 * 125.98658 * 179.44161 * 21 19 18 23 23 C 1.40372 * 106.70831 * 179.85853 * 22 21 19 24 24 C 1.35128 * 107.11184 * 0.40512 * 23 22 21 25 25 O 1.33928 * 108.76738 * 359.75264 * 24 23 22 26 26 H 1.09005 * 109.47019 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46770 * 299.96437 * 1 2 3 28 28 H 1.09000 * 109.46946 * 59.96616 * 1 2 3 29 29 H 1.08998 * 109.49465 * 301.34076 * 4 2 1 30 30 H 1.08999 * 109.49516 * 61.43356 * 4 2 1 31 31 H 1.08999 * 109.58457 * 65.15410 * 5 4 2 32 32 H 1.08996 * 109.58488 * 185.43461 * 5 4 2 33 33 H 0.96991 * 120.00164 * 180.02562 * 10 9 7 34 34 H 1.08995 * 109.61005 * 186.64158 * 15 6 5 35 35 H 1.08997 * 109.56221 * 66.21825 * 15 6 5 36 36 H 0.96997 * 120.00332 * 24.93696 * 18 16 2 37 37 H 1.08001 * 126.64728 * 359.97438 * 22 21 19 38 38 H 1.08002 * 126.44233 * 180.15476 * 23 22 21 39 39 H 1.08005 * 125.61368 * 179.78286 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6886 1.2642 6 7 4.0679 -1.2489 0.0000 7 6 4.9761 -2.2737 -0.0001 8 1 5.0091 -2.9660 0.8282 9 6 5.8544 -2.4227 -1.0647 10 7 6.0605 -1.4209 -1.8930 11 14 6.7437 -4.0452 -1.3216 12 1 6.3419 -5.0034 -0.2607 13 1 6.3865 -4.6003 -2.6518 14 1 8.2103 -3.8215 -1.2562 15 6 3.5714 -0.6892 -1.2647 16 6 2.0399 -0.7207 -1.2501 17 1 1.6974 -1.7554 -1.2387 18 7 1.5256 -0.0486 -2.4459 19 6 1.3984 -0.7318 -3.6007 20 8 1.7103 -1.9070 -3.6500 21 6 0.8892 -0.0574 -4.7994 22 6 0.7217 -0.6256 -6.0296 23 6 0.2119 0.3759 -6.8707 24 6 0.1007 1.4997 -6.1287 25 8 0.5098 1.2347 -4.8813 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5133 0.8903 28 1 -0.3633 0.5144 -0.8897 29 1 1.6572 -0.2208 2.1398 30 1 1.6979 -1.7557 1.2383 31 1 3.9143 0.3409 1.3674 32 1 3.9416 -1.2825 2.0998 33 1 6.6738 -1.5252 -2.6371 34 1 3.9412 -1.2855 -2.0988 35 1 3.9148 0.3401 -1.3681 36 1 1.2766 0.8881 -2.4066 37 1 0.9376 -1.6481 -6.3022 38 1 -0.0398 0.2694 -7.9156 39 1 -0.2594 2.4543 -6.4831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964654895.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:01 Heat of formation + Delta-G solvation = -3.014390 kcal Electronic energy + Delta-G solvation = -22233.291115 eV Core-core repulsion = 18950.116148 eV Total energy + Delta-G solvation = -3283.174966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.63655 -39.43419 -37.54272 -34.40746 -33.32104 -32.87348 -30.98238 -30.19727 -28.57572 -27.31160 -24.17795 -23.53848 -21.88367 -21.58721 -20.97914 -20.02664 -19.46261 -18.16493 -16.80334 -16.24904 -16.19685 -15.59057 -14.84406 -14.22480 -14.06178 -13.72330 -13.57856 -13.33713 -13.15768 -13.00399 -12.94788 -12.70712 -12.39700 -11.99450 -11.64986 -11.57993 -10.88944 -10.69913 -10.66001 -10.43436 -10.15765 -10.07988 -10.06934 -9.90620 -9.64809 -9.48645 -8.77802 -8.49230 -8.41257 -6.64525 -5.73756 -3.16908 1.16996 2.36469 2.75123 3.42561 3.47326 3.52120 3.53537 3.56664 4.55746 4.72712 4.88709 5.05457 5.18118 5.26846 5.40783 5.52560 5.60300 5.64747 5.75299 5.87803 5.92707 6.01790 6.03568 6.12038 6.24806 6.30799 6.38975 6.46708 6.51718 6.72846 6.74138 6.80778 6.92474 6.98292 7.30148 7.73332 7.83103 7.88639 8.46361 8.51173 9.24546 9.88743 10.43387 11.34344 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015819 B = 0.006039 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.611394 B = 4635.309477 C = 5966.576787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.125 4.125 5 C 0.142 3.858 6 N -0.588 5.588 7 C -0.256 4.256 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.899 5.899 11 Si 0.901 3.099 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.291 1.291 15 C 0.165 3.835 16 C 0.123 3.877 17 H 0.085 0.915 18 N -0.705 5.705 19 C 0.596 3.404 20 O -0.511 6.511 21 C -0.064 4.064 22 C -0.131 4.131 23 C -0.224 4.224 24 C -0.018 4.018 25 O -0.165 6.165 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.253 0.747 34 H 0.096 0.904 35 H 0.018 0.982 36 H 0.397 0.603 37 H 0.159 0.841 38 H 0.154 0.846 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.914 7.667 -4.456 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.165 4.165 5 C 0.016 3.984 6 N -0.311 5.311 7 C -0.386 4.386 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.543 5.543 11 Si 0.731 3.269 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.218 1.218 15 C 0.038 3.962 16 C 0.018 3.982 17 H 0.103 0.897 18 N -0.355 5.355 19 C 0.380 3.620 20 O -0.388 6.388 21 C -0.116 4.116 22 C -0.152 4.152 23 C -0.243 4.243 24 C -0.088 4.088 25 O -0.060 6.060 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.036 0.964 36 H 0.231 0.769 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -13.524 6.994 -4.317 15.826 hybrid contribution 0.312 -0.263 -0.601 0.726 sum -13.212 6.731 -4.918 15.622 Atomic orbital electron populations 1.21859 0.95958 1.01609 1.00799 1.21309 0.94625 0.99738 0.95466 0.91396 1.22072 0.98953 1.00065 0.95390 1.20960 0.90806 0.96507 0.90162 1.43963 1.48071 1.39892 0.99132 1.19192 1.09750 1.03211 1.06431 0.91504 1.25031 0.97158 0.97422 0.99657 1.70019 1.37487 1.29050 1.17712 0.86247 0.78896 0.83778 0.77993 1.20176 1.21413 1.21769 1.21116 0.86271 0.97633 0.91147 1.22099 0.98540 0.96435 0.81159 0.89699 1.45984 1.64951 1.14227 1.10318 1.16539 0.78434 0.85911 0.81101 1.90927 1.49800 1.14698 1.83386 1.22431 1.09028 0.82410 0.97767 1.21975 1.00454 1.01412 0.91335 1.21830 1.07648 0.93206 1.01631 1.24324 1.01942 1.00772 0.81770 1.84061 1.63148 1.27397 1.31393 0.92879 0.93050 0.93226 0.92540 0.92042 0.96407 0.92558 0.93686 0.88602 0.96369 0.76909 0.82325 0.82844 0.77622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.02 37.16 0.34 -1.59 16 2 C -0.09 -1.49 2.27 -90.57 -0.21 -1.70 16 3 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -2.11 5.36 -26.61 -0.14 -2.25 16 5 C 0.14 2.95 6.51 -3.71 -0.02 2.92 16 6 N -0.59 -15.00 3.00 -172.32 -0.52 -15.51 16 7 C -0.26 -7.24 9.59 -15.06 -0.14 -7.38 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 9 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 10 N -0.90 -27.06 11.19 55.49 0.62 -26.44 16 11 Si 0.90 22.66 29.59 -169.99 -5.03 17.63 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 C 0.17 4.07 4.89 -3.70 -0.02 4.06 16 16 C 0.12 2.41 2.06 -67.81 -0.14 2.27 16 17 H 0.08 1.88 7.58 -51.93 -0.39 1.49 16 18 N -0.71 -12.16 4.36 -55.01 -0.24 -12.40 16 19 C 0.60 11.20 7.75 -12.86 -0.10 11.10 16 20 O -0.51 -11.69 16.53 5.20 0.09 -11.60 16 21 C -0.06 -1.00 7.13 -36.80 -0.26 -1.26 16 22 C -0.13 -1.84 10.62 -39.39 -0.42 -2.26 16 23 C -0.22 -2.39 10.88 -39.89 -0.43 -2.83 16 24 C -0.02 -0.18 12.08 29.63 0.36 0.18 16 25 O -0.16 -2.15 10.40 5.01 0.05 -2.10 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 33 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.10 2.78 6.04 -51.93 -0.31 2.47 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.40 5.72 8.06 -40.82 -0.33 5.39 16 37 H 0.16 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.21 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -33.22 323.78 -7.04 -40.26 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.61 Total: 3.94 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.28 Total: 1.36 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.14 Total: -54.36 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.14 Total: -13.70 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.03 Total: 17.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.22 -7.04 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964654895.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.241 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds