Wall clock time and date at job start Tue Mar 31 2020 00:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46971 * 60.00379 * 11 9 7 13 13 H 1.48499 * 109.47124 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.46925 * 300.00310 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.34510 * 125.79072 * 89.72050 * 21 20 18 23 23 C 1.41391 * 106.84130 * 179.88928 * 22 21 20 24 24 C 1.34514 * 106.83877 * 0.36884 * 23 22 21 25 25 O 1.34299 * 108.42025 * 359.77387 * 24 23 22 26 26 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 27 27 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 28 28 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 29 29 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 30 30 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 31 31 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 32 32 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 33 33 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 34 34 H 1.09003 * 110.36376 * 278.17089 * 16 15 4 35 35 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 36 36 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 37 37 H 1.08001 * 126.58317 * 0.02562 * 22 21 20 38 38 H 1.08000 * 126.57695 * 180.12441 * 23 22 21 39 39 H 1.08000 * 125.78796 * 179.79581 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 3.7724 -0.9661 6.5562 13 1 3.2831 1.3114 7.2312 14 1 1.4709 -0.2343 6.7768 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 2.6863 0.3370 -5.5869 23 6 1.9607 0.6096 -6.7694 24 6 0.8610 -0.1645 -6.7390 25 8 0.8846 -0.8910 -5.6097 26 1 -0.3633 0.4979 0.8990 27 1 -0.3633 -1.0275 -0.0183 28 1 -0.3634 0.5296 -0.8807 29 1 2.7188 1.1016 2.0480 30 1 3.4616 2.5588 4.9552 31 1 4.1655 -0.8679 0.6615 32 1 3.4857 -2.4089 1.2832 33 1 3.6716 -2.0356 -1.3896 34 1 2.1886 -2.7724 -0.7091 35 1 3.4698 -1.2127 -3.5008 36 1 1.9971 -2.2122 -3.5178 37 1 3.6209 0.7875 -5.2871 38 1 2.2346 1.3085 -7.5459 39 1 0.0902 -0.1966 -7.4947 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987215726.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:51 Heat of formation + Delta-G solvation = -25.178807 kcal Electronic energy + Delta-G solvation = -21469.981914 eV Core-core repulsion = 18185.845827 eV Total energy + Delta-G solvation = -3284.136088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.46883 -41.19610 -38.81576 -35.90848 -34.19764 -33.61627 -32.85626 -32.10991 -30.73696 -27.95620 -26.84280 -24.83802 -23.85424 -22.67164 -21.93032 -21.31863 -20.10645 -19.13982 -18.27369 -18.14702 -17.37150 -16.72672 -16.56627 -16.25930 -15.54032 -15.35868 -15.22948 -14.76991 -14.57567 -14.05624 -13.87198 -13.73026 -13.53860 -13.46248 -13.28517 -13.09811 -12.89634 -12.71730 -12.59706 -12.51058 -12.20126 -12.09141 -11.71253 -11.53156 -10.99551 -10.87159 -10.80008 -9.66725 -9.37873 -9.01928 -7.93372 -5.23408 0.75775 1.49845 1.52652 1.58473 1.59209 1.65759 1.96668 2.23463 2.58448 3.37306 3.50999 3.69059 3.78704 3.86238 4.07410 4.15457 4.16739 4.20233 4.36432 4.38459 4.45351 4.45724 4.54035 4.66730 4.77373 4.93130 4.95154 5.02386 5.05448 5.21209 5.21908 5.27517 5.35717 5.48229 5.55707 5.62569 6.21456 6.26845 6.56708 7.12894 7.33211 8.05706 8.29174 9.30012 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044042 B = 0.003320 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.610785 B = 8430.467254 C = 8527.537488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.132 3.868 3 H 0.041 0.959 4 C 0.170 3.830 5 H 0.072 0.928 6 N -0.729 5.729 7 C -0.238 4.238 8 H 0.084 0.916 9 C -0.076 4.076 10 N -0.972 5.972 11 Si 0.974 3.026 12 H -0.274 1.274 13 H -0.301 1.301 14 H -0.278 1.278 15 C -0.149 4.149 16 C 0.102 3.898 17 N -0.608 5.608 18 C 0.522 3.478 19 O -0.583 6.583 20 C -0.047 4.047 21 C -0.015 4.015 22 C -0.214 4.214 23 C -0.230 4.230 24 C -0.043 4.043 25 O -0.192 6.192 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.370 0.630 30 H 0.250 0.750 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.167 0.833 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.762 -11.358 -20.141 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.027 3.973 3 H 0.060 0.940 4 C 0.060 3.940 5 H 0.090 0.910 6 N -0.368 5.368 7 C -0.369 4.369 8 H 0.102 0.898 9 C -0.268 4.268 10 N -0.623 5.623 11 Si 0.803 3.197 12 H -0.200 1.200 13 H -0.228 1.228 14 H -0.204 1.204 15 C -0.190 4.190 16 C -0.019 4.019 17 N -0.341 5.341 18 C 0.311 3.689 19 O -0.463 6.463 20 C -0.086 4.086 21 C -0.065 4.065 22 C -0.233 4.233 23 C -0.249 4.249 24 C -0.109 4.109 25 O -0.088 6.088 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.202 0.798 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.115 0.885 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.185 0.815 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -1.364 -11.144 -20.082 23.007 hybrid contribution 0.224 1.093 1.049 1.531 sum -1.139 -10.051 -19.033 21.554 Atomic orbital electron populations 1.21924 0.94612 1.02339 1.01319 1.21640 0.94630 0.95445 0.85606 0.94040 1.21451 0.95213 0.91003 0.86337 0.90963 1.42524 1.79684 1.12160 1.02474 1.19605 1.36246 0.97079 0.84006 0.89818 1.25582 1.02953 0.96060 1.02221 1.69828 1.53310 1.05874 1.33247 0.85209 0.78009 0.76607 0.79906 1.19991 1.22751 1.20434 1.23392 0.98808 1.01270 0.95500 1.22639 0.96096 0.87781 0.95425 1.48600 1.52259 1.29194 1.04085 1.20760 0.80147 0.85133 0.82816 1.90707 1.41988 1.29839 1.83759 1.20176 1.04585 1.00285 0.83532 1.21910 0.87358 1.01533 0.95707 1.21878 1.03696 1.00679 0.97077 1.22165 0.97099 1.04900 1.00711 1.24757 1.01813 0.95235 0.89144 1.83970 1.39556 1.55398 1.29925 0.92565 0.91134 0.93368 0.79789 0.94126 0.92525 0.89111 0.87285 0.88465 0.82877 0.84276 0.82869 0.81524 0.74702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.09 71.98 0.65 -4.27 16 2 C 0.13 4.66 3.21 45.34 0.15 4.80 16 3 H 0.04 1.76 7.71 -2.38 -0.02 1.74 16 4 C 0.17 6.23 3.14 46.18 0.14 6.37 16 5 H 0.07 2.59 7.80 -2.39 -0.02 2.57 16 6 N -0.73 -35.53 5.22 -317.33 -1.66 -37.19 16 7 C -0.24 -12.61 9.96 84.03 0.84 -11.77 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 10 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 11 Si 0.97 45.03 29.55 68.60 2.03 47.05 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 14 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 15 C -0.15 -4.28 6.77 31.99 0.22 -4.06 16 16 C 0.10 2.04 6.69 86.86 0.58 2.62 16 17 N -0.61 -16.98 3.07 -788.04 -2.42 -19.39 16 18 C 0.52 15.12 7.64 87.66 0.67 15.79 16 19 O -0.58 -22.77 15.08 -3.04 -0.05 -22.82 16 20 C -0.05 -0.88 5.24 29.10 0.15 -0.73 16 21 C -0.01 -0.36 5.81 24.83 0.14 -0.22 16 22 C -0.21 -5.01 10.81 22.19 0.24 -4.77 16 23 C -0.23 -4.69 10.91 22.19 0.24 -4.45 16 24 C -0.04 -0.82 12.09 66.97 0.81 -0.01 16 25 O -0.19 -4.77 10.65 -2.49 -0.03 -4.79 16 26 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.76 6.90 -2.38 -0.02 1.75 16 29 H 0.37 20.10 7.56 -92.71 -0.70 19.40 16 30 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 32 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.11 1.42 7.48 -2.39 -0.02 1.41 16 34 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.15 1.87 7.85 -2.39 -0.02 1.85 16 36 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 38 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 39 H 0.24 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -74.50 329.28 3.82 -70.68 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.35 Total: 29.87 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 5.30 Total: -4.49 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -3.79 Total: -115.51 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.07 Total: -27.61 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -74.50 3.82 -70.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987215726.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.502 kcal (2) G-P(sol) polarization free energy of solvation -74.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds