Wall clock time and date at job start Tue Mar 31 2020 00:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.99260 * 2 1 4 4 C 1.54317 * 109.88357 * 121.09143 * 2 1 3 5 5 H 1.09001 * 110.87160 * 260.04872 * 4 2 1 6 6 N 1.46498 * 110.72217 * 23.25196 * 4 2 1 7 7 C 1.36943 * 119.99993 * 264.41437 * 6 4 2 8 8 H 1.07998 * 120.00152 * 359.72482 * 7 6 4 9 9 C 1.38810 * 119.99756 * 179.71810 * 7 6 4 10 10 N 1.31619 * 119.99610 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 120.00506 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47401 * 89.99058 * 11 9 7 13 13 H 1.48500 * 109.47234 * 209.99598 * 11 9 7 14 14 H 1.48510 * 109.46961 * 329.99464 * 11 9 7 15 15 C 1.55158 * 102.94154 * 141.61581 * 4 2 1 16 16 C 1.54912 * 101.58071 * 324.49572 * 15 4 2 17 17 N 1.47015 * 109.88300 * 238.90533 * 2 1 3 18 18 C 1.34779 * 125.65457 * 61.60290 * 17 2 1 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 2 20 20 C 1.50699 * 120.00496 * 180.02562 * 18 17 2 21 21 C 1.50698 * 109.47133 * 179.97438 * 20 18 17 22 22 C 1.34511 * 125.78922 * 90.00388 * 21 20 18 23 23 C 1.41383 * 106.84173 * 180.02562 * 22 21 20 24 24 C 1.34511 * 106.83803 * 359.97438 * 23 22 21 25 25 O 1.34298 * 125.79119 * 269.68965 * 21 20 18 26 26 H 1.08994 * 109.47076 * 293.64000 * 1 2 3 27 27 H 1.08997 * 109.47172 * 53.64315 * 1 2 3 28 28 H 1.09005 * 109.46600 * 173.63815 * 1 2 3 29 29 H 0.96997 * 120.00415 * 84.13437 * 6 4 2 30 30 H 0.97005 * 120.00078 * 180.02562 * 10 9 7 31 31 H 1.08993 * 111.00393 * 82.57163 * 15 4 2 32 32 H 1.09003 * 110.99988 * 206.38729 * 15 4 2 33 33 H 1.08993 * 110.36615 * 155.84743 * 16 15 4 34 34 H 1.08995 * 110.36712 * 278.17558 * 16 15 4 35 35 H 1.09002 * 109.47098 * 299.99811 * 20 18 17 36 36 H 1.08996 * 109.46838 * 60.00077 * 20 18 17 37 37 H 1.08003 * 126.57939 * 0.03112 * 22 21 20 38 38 H 1.08001 * 126.57866 * 180.02562 * 23 22 21 39 39 H 1.08007 * 125.78960 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0549 -0.7494 1.2427 5 1 2.3525 -0.0480 2.0222 6 7 1.0473 -1.6854 1.7475 7 6 0.2102 -1.3081 2.7635 8 1 0.2958 -0.3221 3.1956 9 6 -0.7483 -2.1931 3.2377 10 7 -1.5525 -1.8306 4.2146 11 14 -0.8960 -3.8987 2.4907 12 1 -0.0184 -4.8409 3.2305 13 1 -2.3049 -4.3590 2.5822 14 1 -0.4820 -3.8524 1.0652 15 6 3.2877 -1.5140 0.6924 16 6 2.8146 -1.8793 -0.7367 17 7 2.0300 -0.7140 -1.1839 18 6 1.8074 -0.3621 -2.4657 19 8 1.1436 0.6211 -2.7181 20 6 2.3833 -1.1901 -3.5854 21 6 1.9903 -0.5873 -4.9095 22 6 2.6878 0.3402 -5.5896 23 6 1.9589 0.6177 -6.7688 24 6 0.8599 -0.1572 -6.7390 25 8 0.8872 -0.8892 -5.6134 26 1 -0.3633 0.4121 0.9414 27 1 -0.3633 0.6092 -0.8276 28 1 -0.3633 -1.0214 -0.1139 29 1 0.9704 -2.5710 1.3593 30 1 -2.2222 -2.4491 4.5463 31 1 4.1654 -0.8686 0.6604 32 1 3.4857 -2.4104 1.2801 33 1 3.6717 -2.0337 -1.3921 34 1 2.1888 -2.7714 -0.7127 35 1 3.4700 -1.2080 -3.5022 36 1 1.9971 -2.2073 -3.5208 37 1 3.6249 0.7871 -5.2920 38 1 2.2326 1.3170 -7.5450 39 1 0.0887 -0.1890 -7.4946 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987215727.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:54 Heat of formation + Delta-G solvation = -18.263800 kcal Electronic energy + Delta-G solvation = -21928.433590 eV Core-core repulsion = 18644.597360 eV Total energy + Delta-G solvation = -3283.836230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.48296 -41.22141 -38.94526 -35.84452 -34.18557 -33.64009 -32.97613 -32.09526 -30.93377 -27.95686 -26.88496 -24.94000 -23.81070 -22.67900 -21.94579 -21.14536 -19.86156 -19.73313 -18.29026 -18.11830 -17.42159 -16.75063 -16.48490 -16.18559 -15.62760 -15.31513 -15.22697 -15.04648 -14.67352 -14.12961 -13.86419 -13.75419 -13.72118 -13.53286 -13.49940 -13.07459 -12.86374 -12.69941 -12.42609 -12.33928 -12.05268 -11.89476 -11.69063 -11.61892 -11.02559 -10.90997 -10.80276 -9.63194 -9.40067 -9.29307 -7.98835 -5.31799 0.75551 1.37549 1.41679 1.48084 1.60730 1.67762 2.00268 2.27887 2.50326 3.30504 3.52470 3.59489 3.70767 3.73151 4.09080 4.13477 4.15707 4.26381 4.36506 4.36973 4.43004 4.51908 4.60587 4.75666 4.80128 4.92652 4.98634 5.01997 5.11514 5.21125 5.25019 5.28405 5.44849 5.47628 5.63420 5.82198 6.21462 6.24434 6.60809 7.10843 7.16886 7.85560 8.04178 9.22714 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.004294 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.339938 B = 6518.892971 C = 6770.859543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.114 3.886 3 H 0.064 0.936 4 C 0.166 3.834 5 H 0.078 0.922 6 N -0.734 5.734 7 C -0.216 4.216 8 H 0.059 0.941 9 C -0.063 4.063 10 N -0.985 5.985 11 Si 0.948 3.052 12 H -0.273 1.273 13 H -0.306 1.306 14 H -0.254 1.254 15 C -0.132 4.132 16 C 0.094 3.906 17 N -0.606 5.606 18 C 0.519 3.481 19 O -0.584 6.584 20 C -0.048 4.048 21 C -0.018 4.018 22 C -0.208 4.208 23 C -0.227 4.227 24 C -0.048 4.048 25 O -0.198 6.198 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.366 0.634 30 H 0.255 0.745 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.066 0.934 35 H 0.162 0.838 36 H 0.127 0.873 37 H 0.161 0.839 38 H 0.170 0.830 39 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.818 -1.591 -20.430 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 H 0.082 0.918 4 C 0.055 3.945 5 H 0.096 0.904 6 N -0.375 5.375 7 C -0.347 4.347 8 H 0.077 0.923 9 C -0.254 4.254 10 N -0.636 5.636 11 Si 0.776 3.224 12 H -0.199 1.199 13 H -0.234 1.234 14 H -0.179 1.179 15 C -0.170 4.170 16 C -0.028 4.028 17 N -0.340 5.340 18 C 0.309 3.691 19 O -0.464 6.464 20 C -0.087 4.087 21 C -0.068 4.068 22 C -0.227 4.227 23 C -0.246 4.246 24 C -0.115 4.115 25 O -0.095 6.095 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.200 0.800 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.115 0.885 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.179 0.821 36 H 0.145 0.855 37 H 0.179 0.821 38 H 0.187 0.813 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 14.171 -1.155 -20.359 24.832 hybrid contribution -1.065 -0.478 0.018 1.167 sum 13.106 -1.633 -20.341 24.253 Atomic orbital electron populations 1.21603 0.96374 1.00264 0.99623 1.22391 0.93856 0.96279 0.86656 0.91774 1.21443 0.88841 0.91999 0.92180 0.90446 1.42634 1.39707 1.14392 1.40808 1.18951 1.09007 0.98821 1.07877 0.92276 1.25405 0.98457 1.02215 0.99316 1.69879 1.24520 1.37376 1.31841 0.85522 0.76415 0.81161 0.79307 1.19883 1.23378 1.17887 1.23136 0.97089 1.02110 0.94706 1.22641 0.95856 0.87421 0.96855 1.48681 1.52040 1.28988 1.04269 1.20734 0.80179 0.85160 0.83041 1.90702 1.41820 1.30084 1.83843 1.20198 1.04919 0.99794 0.83830 1.21970 0.87394 1.01737 0.95674 1.21869 1.03582 1.00524 0.96709 1.22178 0.96783 1.04739 1.00890 1.24750 1.02073 0.95325 0.89326 1.83980 1.40222 1.55115 1.30196 0.93316 0.95156 0.94228 0.80009 0.93613 0.87566 0.88452 0.86099 0.91583 0.82063 0.85537 0.82150 0.81272 0.75061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 8.02 71.98 0.58 -4.49 16 2 C 0.11 3.91 3.44 45.34 0.16 4.07 16 3 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 4 C 0.17 5.44 3.52 46.18 0.16 5.60 16 5 H 0.08 2.65 8.06 -2.39 -0.02 2.63 16 6 N -0.73 -30.69 3.71 -317.34 -1.18 -31.87 16 7 C -0.22 -11.50 8.89 84.03 0.75 -10.75 16 8 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 9 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 10 N -0.99 -62.26 13.97 21.65 0.30 -61.95 16 11 Si 0.95 44.13 27.74 68.60 1.90 46.03 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 14 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 15 C -0.13 -2.79 6.69 31.99 0.21 -2.57 16 16 C 0.09 1.81 6.62 86.86 0.58 2.38 16 17 N -0.61 -16.84 3.07 -788.06 -2.42 -19.25 16 18 C 0.52 15.35 7.64 87.66 0.67 16.02 16 19 O -0.58 -23.25 15.18 -3.05 -0.05 -23.30 16 20 C -0.05 -0.95 5.24 29.10 0.15 -0.80 16 21 C -0.02 -0.44 5.81 24.83 0.14 -0.29 16 22 C -0.21 -4.67 10.81 22.19 0.24 -4.43 16 23 C -0.23 -4.61 10.91 22.19 0.24 -4.37 16 24 C -0.05 -0.99 12.09 66.97 0.81 -0.18 16 25 O -0.20 -5.35 10.65 -2.40 -0.03 -5.37 16 26 H 0.05 2.26 7.11 -2.39 -0.02 2.25 16 27 H 0.03 1.30 7.08 -2.39 -0.02 1.29 16 28 H 0.04 1.75 7.64 -2.38 -0.02 1.74 16 29 H 0.37 14.74 5.70 -92.71 -0.53 14.21 16 30 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 31 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.12 1.22 7.48 -2.39 -0.02 1.20 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.16 1.73 7.85 -2.39 -0.02 1.71 16 36 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 38 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.23 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -78.03 322.38 4.16 -73.87 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.46 Total: 24.77 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: 5.16 Total: -2.93 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -3.29 Total: -113.08 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.07 Total: -28.67 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Total: -78.03 4.16 -73.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987215727.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.607 kcal (2) G-P(sol) polarization free energy of solvation -78.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds