Wall clock time and date at job start Tue Mar 31 2020 00:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.87362 * 2 1 4 4 C 1.54325 * 109.88526 * 121.17605 * 2 1 3 5 5 C 1.55155 * 102.94360 * 141.61177 * 4 2 1 6 6 H 1.08993 * 111.00355 * 82.61403 * 5 4 2 7 7 N 1.46508 * 111.00120 * 206.42755 * 5 4 2 8 8 C 1.36934 * 119.99622 * 204.99918 * 7 5 4 9 9 H 1.08002 * 120.00543 * 0.02562 * 8 7 5 10 10 C 1.38815 * 119.99951 * 179.97438 * 8 7 5 11 11 N 1.31615 * 119.99828 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00051 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47615 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.47398 * 119.99758 * 12 10 8 15 15 H 1.48497 * 109.47386 * 239.99736 * 12 10 8 16 16 C 1.55132 * 101.48719 * 324.33126 * 5 4 2 17 17 N 1.47026 * 109.88518 * 238.98208 * 2 1 3 18 18 C 1.34784 * 125.64491 * 61.60477 * 17 2 1 19 19 O 1.21274 * 119.99897 * 359.72909 * 18 17 2 20 20 C 1.50695 * 119.99635 * 179.97438 * 18 17 2 21 21 C 1.50707 * 109.47011 * 180.02562 * 20 18 17 22 22 C 1.41378 * 126.57522 * 269.71863 * 21 20 18 23 23 C 1.34514 * 106.83937 * 179.83302 * 22 21 20 24 24 O 1.34306 * 108.42224 * 0.42332 * 23 22 21 25 25 C 1.34307 * 109.47118 * 359.72698 * 24 23 22 26 26 H 1.09005 * 109.46986 * 179.56140 * 1 2 3 27 27 H 1.08991 * 109.47221 * 299.55963 * 1 2 3 28 28 H 1.09005 * 109.47006 * 59.56728 * 1 2 3 29 29 H 1.08996 * 110.72050 * 259.97613 * 4 2 1 30 30 H 1.09009 * 110.71856 * 23.24634 * 4 2 1 31 31 H 0.96994 * 119.99846 * 24.99530 * 7 5 4 32 32 H 0.96997 * 119.99959 * 180.02562 * 11 10 8 33 33 H 1.09001 * 110.49783 * 278.45863 * 16 5 4 34 34 H 1.09000 * 110.33989 * 156.06084 * 16 5 4 35 35 H 1.09005 * 109.47403 * 300.00056 * 20 18 17 36 36 H 1.09002 * 109.47422 * 60.00295 * 20 18 17 37 37 H 1.08001 * 126.58429 * 359.97438 * 22 21 20 38 38 H 1.08001 * 125.79096 * 180.11264 * 23 22 21 39 39 H 1.08003 * 125.78788 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7513 1.2416 5 6 3.2877 -1.5151 0.6902 6 1 4.1655 -0.8699 0.6598 7 7 3.5532 -2.7217 1.4778 8 6 4.8164 -3.2486 1.5183 9 1 5.6171 -2.7746 0.9699 10 6 5.0682 -4.3914 2.2649 11 7 4.0928 -4.9682 2.9344 12 14 6.7915 -5.1098 2.3206 13 1 7.7011 -4.2798 1.4905 14 1 7.2773 -5.1230 3.7240 15 1 6.7667 -6.4975 1.7924 16 6 2.8100 -1.8815 -0.7395 17 7 2.0300 -0.7125 -1.1849 18 6 1.8074 -0.3586 -2.4663 19 8 1.1391 0.6218 -2.7172 20 6 2.3843 -1.1844 -3.5870 21 6 1.9921 -0.5792 -4.9103 22 6 0.8365 -0.8827 -5.6661 23 6 0.8797 -0.1147 -6.7696 24 8 1.9987 0.6269 -6.7270 25 6 2.6771 0.3493 -5.6016 26 1 -0.3633 -1.0277 -0.0079 27 1 -0.3633 0.5069 0.8938 28 1 -0.3633 0.5206 -0.8861 29 1 2.3529 -0.0488 2.0200 30 1 1.3051 -1.4482 1.6162 31 1 2.8342 -3.1471 1.9706 32 1 4.2688 -5.7666 3.4564 33 1 2.1801 -2.7708 -0.7154 34 1 3.6656 -2.0392 -1.3961 35 1 3.4710 -1.2017 -3.5036 36 1 1.9989 -2.2021 -3.5241 37 1 0.0656 -1.5931 -5.4062 38 1 0.1425 -0.1008 -7.5587 39 1 3.6137 0.7962 -5.3023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988693570.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:20 Heat of formation + Delta-G solvation = -26.608263 kcal Electronic energy + Delta-G solvation = -21422.412957 eV Core-core repulsion = 18138.214883 eV Total energy + Delta-G solvation = -3284.198073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.43146 -41.14462 -38.76139 -35.97359 -34.96328 -33.27548 -32.90850 -31.10561 -30.05158 -28.61798 -26.69067 -25.76058 -23.34751 -22.47188 -21.85354 -21.26412 -19.85498 -19.23915 -18.30495 -18.06626 -17.32195 -16.81047 -16.45211 -16.15319 -15.66591 -15.39882 -15.32494 -14.81545 -14.33845 -14.17047 -14.09881 -13.67824 -13.59229 -13.45737 -13.33979 -13.02282 -12.86941 -12.77195 -12.46857 -12.32338 -12.04929 -12.01312 -11.71897 -11.47375 -11.07265 -10.92144 -10.49925 -9.63743 -9.41563 -9.02898 -7.92958 -5.22609 0.89027 1.51729 1.53078 1.57900 1.62021 1.65337 2.15138 2.33589 2.59230 3.39207 3.49650 3.81582 3.85182 3.94255 3.98938 4.04197 4.15934 4.17754 4.33947 4.47504 4.52239 4.52978 4.60920 4.74372 4.76056 4.83640 4.88186 5.08155 5.11601 5.15290 5.23650 5.30929 5.39885 5.44930 5.57593 5.58618 6.21032 6.28257 6.59010 7.19900 7.36162 8.07603 8.31527 9.30158 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.003919 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.378431 B = 7142.557463 C = 8092.590669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.068 0.932 7 N -0.723 5.723 8 C -0.241 4.241 9 H 0.082 0.918 10 C -0.070 4.070 11 N -0.967 5.967 12 Si 0.968 3.032 13 H -0.264 1.264 14 H -0.298 1.298 15 H -0.296 1.296 16 C 0.086 3.914 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.575 6.575 20 C -0.063 4.063 21 C -0.180 4.180 22 C -0.224 4.224 23 C -0.042 4.042 24 O -0.189 6.189 25 C -0.038 4.038 26 H 0.051 0.949 27 H 0.081 0.919 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.377 0.623 32 H 0.251 0.749 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.152 0.848 38 H 0.236 0.764 39 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.082 9.309 -14.808 18.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.034 3.966 3 H 0.092 0.908 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.086 0.914 7 N -0.362 5.362 8 C -0.373 4.373 9 H 0.100 0.900 10 C -0.262 4.262 11 N -0.617 5.617 12 Si 0.798 3.202 13 H -0.188 1.188 14 H -0.225 1.225 15 H -0.223 1.223 16 C -0.040 4.040 17 N -0.344 5.344 18 C 0.317 3.683 19 O -0.455 6.455 20 C -0.103 4.103 21 C -0.182 4.182 22 C -0.243 4.243 23 C -0.109 4.109 24 O -0.084 6.084 25 C -0.106 4.106 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.209 0.791 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.170 0.830 38 H 0.252 0.748 39 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.151 10.029 -15.250 18.966 hybrid contribution 0.356 -1.085 0.750 1.366 sum -4.795 8.944 -14.500 17.699 Atomic orbital electron populations 1.22042 0.94512 1.01868 1.02571 1.21541 0.94767 0.96011 0.84276 0.90835 1.22940 0.97762 0.99430 0.96323 1.21504 0.95904 0.87965 0.89211 0.91357 1.42450 1.08507 1.28933 1.56282 1.19684 0.88014 1.06128 1.23424 0.90041 1.25499 1.00853 0.99373 1.00520 1.69807 1.32607 1.22800 1.36520 0.85153 0.80290 0.77883 0.76887 1.18802 1.22518 1.22320 1.23205 0.94780 0.87312 0.98653 1.48681 1.52265 1.28540 1.04881 1.20682 0.79965 0.84990 0.82676 1.90646 1.41458 1.29547 1.83801 1.19992 1.03282 0.99355 0.87631 1.20057 0.97894 1.02394 0.97847 1.21956 1.00412 1.05248 0.96715 1.24622 0.90012 0.94350 1.01909 1.84055 1.30985 1.54523 1.38878 1.24242 1.00119 1.00105 0.86090 0.93026 0.89991 0.93163 0.89213 0.90784 0.79090 0.94055 0.92210 0.90051 0.86297 0.87167 0.83026 0.74790 0.76266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.10 71.98 0.66 -3.37 16 2 C 0.14 3.86 3.46 45.34 0.16 4.02 16 3 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 4 C -0.13 -3.69 6.12 31.78 0.19 -3.50 16 5 C 0.16 5.74 3.73 46.46 0.17 5.91 16 6 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 7 N -0.72 -32.82 5.24 -316.00 -1.66 -34.48 16 8 C -0.24 -12.21 9.96 84.03 0.84 -11.38 16 9 H 0.08 3.93 7.83 -2.91 -0.02 3.90 16 10 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 11 N -0.97 -56.12 13.06 21.65 0.28 -55.84 16 12 Si 0.97 43.58 29.55 68.60 2.03 45.60 16 13 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 14 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 16 C 0.09 2.65 6.39 86.93 0.56 3.21 16 17 N -0.61 -17.79 3.06 -787.61 -2.41 -20.20 16 18 C 0.53 15.70 7.64 87.65 0.67 16.37 16 19 O -0.57 -20.70 15.06 -3.01 -0.05 -20.75 16 20 C -0.06 -1.48 5.22 29.10 0.15 -1.33 16 21 C -0.18 -4.40 4.66 -19.94 -0.09 -4.49 16 22 C -0.22 -5.10 10.87 22.19 0.24 -4.86 16 23 C -0.04 -0.81 12.09 66.97 0.81 0.00 16 24 O -0.19 -4.25 10.65 -2.55 -0.03 -4.28 16 25 C -0.04 -0.85 12.01 66.97 0.80 -0.05 16 26 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.05 1.50 6.87 -2.38 -0.02 1.48 16 29 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.07 2.25 7.71 -2.38 -0.02 2.23 16 31 H 0.38 18.60 7.76 -92.71 -0.72 17.88 16 32 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.31 7.48 -2.39 -0.02 2.29 16 35 H 0.12 2.32 7.85 -2.38 -0.02 2.30 16 36 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 38 H 0.24 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.22 3.56 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -65.99 329.63 4.12 -61.87 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.33 Total: 30.83 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.62 Total: -2.76 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -3.79 Total: -110.52 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.07 Total: -25.03 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.99 4.12 -61.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988693570.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.262 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds