Wall clock time and date at job start Tue Mar 31 2020 00:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.32591 * 2 1 4 4 C 1.54904 * 110.37019 * 237.64685 * 2 1 3 5 5 C 1.55157 * 101.58552 * 204.15172 * 4 2 1 6 6 H 1.08995 * 110.72055 * 276.96195 * 5 4 2 7 7 N 1.46502 * 110.72375 * 153.86019 * 5 4 2 8 8 C 1.36936 * 119.99799 * 154.99965 * 7 5 4 9 9 H 1.07995 * 120.00322 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99374 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00686 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99710 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47090 * 59.99936 * 12 10 8 14 14 H 1.48498 * 109.47090 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47112 * 300.00282 * 12 10 8 16 16 C 1.54343 * 103.01877 * 35.30521 * 5 4 2 17 17 N 1.47027 * 107.26182 * 338.14305 * 16 5 4 18 18 C 1.34777 * 125.64300 * 178.85335 * 17 16 5 19 19 O 1.21278 * 119.99854 * 179.69318 * 18 17 16 20 20 C 1.50703 * 120.00161 * 359.68625 * 18 17 16 21 21 C 1.50701 * 109.47064 * 180.02562 * 20 18 17 22 22 C 1.41379 * 126.58090 * 269.71363 * 21 20 18 23 23 C 1.34518 * 106.84310 * 179.83474 * 22 21 20 24 24 O 1.34312 * 108.41636 * 0.42876 * 23 22 21 25 25 C 1.34306 * 109.47380 * 359.72197 * 24 23 22 26 26 H 1.09000 * 109.47166 * 299.22130 * 1 2 3 27 27 H 1.09001 * 109.46841 * 59.21578 * 1 2 3 28 28 H 1.08997 * 109.47248 * 179.21773 * 1 2 3 29 29 H 1.09001 * 111.00439 * 322.22295 * 4 2 1 30 30 H 1.08996 * 111.00805 * 86.03587 * 4 2 1 31 31 H 0.97000 * 119.99861 * 335.00643 * 7 5 4 32 32 H 0.96994 * 120.00311 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.98935 * 218.66835 * 16 5 4 34 34 H 1.09000 * 109.77621 * 97.49398 * 16 5 4 35 35 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 36 36 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 37 37 H 1.08006 * 126.57867 * 0.02562 * 22 21 20 38 38 H 1.07990 * 125.79250 * 180.11839 * 23 22 21 39 39 H 1.08005 * 125.78509 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7771 -1.2267 5 6 3.4778 -1.2004 -0.7329 6 1 4.1952 -0.3922 -0.8746 7 7 3.9251 -2.4143 -1.4204 8 6 5.2632 -2.6778 -1.5436 9 1 5.9888 -1.9911 -1.1336 10 6 5.6869 -3.8278 -2.1955 11 7 4.8026 -4.6651 -2.6948 12 14 7.5122 -4.1877 -2.3630 13 1 8.1214 -4.2955 -1.0129 14 1 7.6995 -5.4669 -3.0936 15 1 8.1668 -3.0871 -3.1149 16 6 3.2525 -1.4716 0.7697 17 7 2.0430 -0.7372 1.1690 18 6 1.4972 -0.7338 2.4013 19 8 0.4966 -0.0841 2.6195 20 6 2.1301 -1.5374 3.5080 21 6 1.3317 -1.3642 4.7744 22 6 1.5302 -0.3773 5.7672 23 6 0.5990 -0.5856 6.7154 24 8 -0.1426 -1.6462 6.3561 25 6 0.2973 -2.1223 5.1798 26 1 -0.3633 0.5017 0.8969 27 1 -0.3633 0.5260 -0.8829 28 1 -0.3633 -1.0275 -0.0140 29 1 1.4512 -1.6495 -1.4391 30 1 2.1393 -0.1287 -2.1001 31 1 3.2733 -3.0313 -1.7884 32 1 5.0987 -5.4684 -3.1506 33 1 4.1081 -1.1174 1.3447 34 1 3.1089 -2.5395 0.9343 35 1 3.1505 -1.1906 3.6711 36 1 2.1446 -2.5911 3.2293 37 1 2.2828 0.3973 5.7634 38 1 0.4728 -0.0025 7.6155 39 1 -0.1103 -2.9705 4.6496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988693572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:26 Heat of formation + Delta-G solvation = -4.410077 kcal Electronic energy + Delta-G solvation = -21471.014421 eV Core-core repulsion = 18187.778933 eV Total energy + Delta-G solvation = -3283.235488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.54975 -39.89672 -37.36913 -34.25404 -33.94403 -31.84570 -31.40031 -30.16521 -28.46669 -27.58269 -25.32211 -23.91801 -22.11399 -21.61578 -20.46262 -20.21147 -18.68315 -17.40398 -17.30469 -16.66699 -16.12302 -15.74600 -15.13565 -14.79667 -14.61014 -14.03608 -13.70341 -13.34706 -13.13964 -12.98514 -12.81322 -12.65755 -12.41842 -12.10710 -11.89295 -11.72656 -11.50181 -11.24411 -11.04670 -10.80621 -10.69096 -10.34574 -10.09279 -9.81695 -9.77796 -9.31511 -9.01813 -8.53200 -8.29457 -7.14029 -5.88717 -3.19995 1.76544 2.52796 2.88410 3.12001 3.36347 3.37887 3.42885 3.43235 4.48590 4.73291 4.76174 4.81072 5.00169 5.10843 5.23216 5.27762 5.39509 5.48365 5.53675 5.58345 5.64552 5.68942 5.83872 5.88314 5.99212 6.09888 6.12547 6.13165 6.20789 6.41694 6.45182 6.48320 6.51202 6.71793 6.85129 7.09019 7.58877 7.86044 8.28553 8.45651 9.40582 9.94298 10.29156 11.33116 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003932 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.714586 B = 7118.937987 C = 7976.852354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.137 3.863 3 H 0.070 0.930 4 C -0.137 4.137 5 C 0.172 3.828 6 H 0.067 0.933 7 N -0.713 5.713 8 C -0.251 4.251 9 H 0.072 0.928 10 C -0.007 4.007 11 N -0.930 5.930 12 Si 0.908 3.092 13 H -0.285 1.285 14 H -0.291 1.291 15 H -0.285 1.285 16 C 0.072 3.928 17 N -0.611 5.611 18 C 0.529 3.471 19 O -0.543 6.543 20 C -0.069 4.069 21 C -0.157 4.157 22 C -0.198 4.198 23 C -0.049 4.049 24 O -0.179 6.179 25 C -0.029 4.029 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.387 0.613 32 H 0.258 0.742 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.145 0.855 38 H 0.200 0.800 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.161 7.688 13.136 16.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.033 3.967 3 H 0.088 0.912 4 C -0.176 4.176 5 C 0.060 3.940 6 H 0.085 0.915 7 N -0.352 5.352 8 C -0.382 4.382 9 H 0.090 0.910 10 C -0.204 4.204 11 N -0.577 5.577 12 Si 0.739 3.261 13 H -0.211 1.211 14 H -0.216 1.216 15 H -0.211 1.211 16 C -0.054 4.054 17 N -0.345 5.345 18 C 0.317 3.683 19 O -0.421 6.421 20 C -0.109 4.109 21 C -0.159 4.159 22 C -0.217 4.217 23 C -0.116 4.116 24 O -0.074 6.074 25 C -0.097 4.097 26 H 0.101 0.899 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.221 0.779 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.162 0.838 38 H 0.216 0.784 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -7.748 7.867 13.446 17.399 hybrid contribution 1.157 -0.439 -0.378 1.294 sum -6.591 7.429 13.067 16.413 Atomic orbital electron populations 1.22154 0.94421 1.02411 1.03006 1.21839 0.94716 0.95264 0.84842 0.91170 1.23172 0.97882 1.00283 0.96279 1.21167 0.93258 0.91072 0.88548 0.91460 1.42376 1.05255 1.22194 1.65414 1.19219 0.83336 1.04583 1.31078 0.90967 1.24769 0.97723 0.97309 1.00600 1.69644 1.32418 1.13394 1.42217 0.86262 0.84809 0.77338 0.77707 1.21123 1.21633 1.21124 1.23328 0.85142 0.96636 1.00309 1.48660 1.28621 1.48487 1.08774 1.20158 0.84066 0.81941 0.82108 1.90613 1.25545 1.44060 1.81908 1.19988 0.99439 1.01677 0.89801 1.19840 0.99962 0.98539 0.97513 1.21668 1.02699 1.01942 0.95391 1.23901 0.94297 0.91626 1.01779 1.84046 1.50628 1.38693 1.34078 1.23788 0.97557 1.01823 0.86530 0.89875 0.92479 0.92884 0.90579 0.90248 0.77860 0.93244 0.92267 0.90886 0.88118 0.88074 0.83751 0.78376 0.78363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.32 8.71 37.16 0.32 -2.00 16 2 C 0.14 2.02 3.76 -66.42 -0.25 1.77 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.14 6.13 -24.58 -0.15 -2.29 16 5 C 0.17 3.12 3.61 -66.08 -0.24 2.88 16 6 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 7 N -0.71 -16.49 5.15 -51.64 -0.27 -16.76 16 8 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 11 N -0.93 -26.78 13.06 55.49 0.72 -26.05 16 12 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 13 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C 0.07 1.17 6.25 -3.05 -0.02 1.15 16 17 N -0.61 -9.44 3.24 -163.04 -0.53 -9.97 16 18 C 0.53 8.25 7.62 -10.98 -0.08 8.17 16 19 O -0.54 -9.84 13.69 5.56 0.08 -9.76 16 20 C -0.07 -0.89 5.41 -29.03 -0.16 -1.04 16 21 C -0.16 -2.04 4.66 -104.75 -0.49 -2.53 16 22 C -0.20 -2.36 10.87 -39.70 -0.43 -2.80 16 23 C -0.05 -0.52 12.09 29.42 0.36 -0.16 16 24 O -0.18 -2.19 10.65 5.68 0.06 -2.13 16 25 C -0.03 -0.36 12.01 29.41 0.35 0.00 16 26 H 0.08 1.33 5.89 -51.93 -0.31 1.02 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.39 9.63 7.76 -40.82 -0.32 9.31 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 38 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.20 1.89 8.06 -52.48 -0.42 1.47 16 LS Contribution 328.24 15.07 4.95 4.95 Total: -1.00 -30.95 328.24 -6.69 -37.64 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -5.64 Total: 9.59 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.03 Total: -3.80 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.07 Total: -52.78 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.14 Total: -11.89 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.95 -6.69 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988693572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.228 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds