Wall clock time and date at job start Tue Mar 31 2020 00:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 110.32591 * 2 1 4 4 C 1.54904 * 110.37019 * 237.64685 * 2 1 3 5 5 C 1.55157 * 101.58552 * 204.15172 * 4 2 1 6 6 H 1.08995 * 110.72055 * 276.96195 * 5 4 2 7 7 N 1.46502 * 110.72375 * 153.86019 * 5 4 2 8 8 C 1.36936 * 119.99799 * 154.99965 * 7 5 4 9 9 H 1.07995 * 120.00322 * 0.02562 * 8 7 5 10 10 C 1.38812 * 119.99374 * 180.02562 * 8 7 5 11 11 N 1.31614 * 120.00686 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99710 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47090 * 59.99936 * 12 10 8 14 14 H 1.48498 * 109.47090 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47112 * 300.00282 * 12 10 8 16 16 C 1.54343 * 103.01877 * 35.30521 * 5 4 2 17 17 N 1.47027 * 107.26182 * 338.14305 * 16 5 4 18 18 C 1.34777 * 125.64300 * 178.85335 * 17 16 5 19 19 O 1.21278 * 119.99854 * 179.69318 * 18 17 16 20 20 C 1.50703 * 120.00161 * 359.68625 * 18 17 16 21 21 C 1.50701 * 109.47064 * 180.02562 * 20 18 17 22 22 C 1.41379 * 126.58090 * 269.71363 * 21 20 18 23 23 C 1.34518 * 106.84310 * 179.83474 * 22 21 20 24 24 O 1.34312 * 108.41636 * 0.42876 * 23 22 21 25 25 C 1.34306 * 109.47380 * 359.72197 * 24 23 22 26 26 H 1.09000 * 109.47166 * 299.22130 * 1 2 3 27 27 H 1.09001 * 109.46841 * 59.21578 * 1 2 3 28 28 H 1.08997 * 109.47248 * 179.21773 * 1 2 3 29 29 H 1.09001 * 111.00439 * 322.22295 * 4 2 1 30 30 H 1.08996 * 111.00805 * 86.03587 * 4 2 1 31 31 H 0.97000 * 119.99861 * 335.00643 * 7 5 4 32 32 H 0.96994 * 120.00311 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.98935 * 218.66835 * 16 5 4 34 34 H 1.09000 * 109.77621 * 97.49398 * 16 5 4 35 35 H 1.09002 * 109.47152 * 60.00245 * 20 18 17 36 36 H 1.09001 * 109.46980 * 300.00345 * 20 18 17 37 37 H 1.08006 * 126.57867 * 0.02562 * 22 21 20 38 38 H 1.07990 * 125.79250 * 180.11839 * 23 22 21 39 39 H 1.08005 * 125.78509 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0692 -0.7771 -1.2267 5 6 3.4778 -1.2004 -0.7329 6 1 4.1952 -0.3922 -0.8746 7 7 3.9251 -2.4143 -1.4204 8 6 5.2632 -2.6778 -1.5436 9 1 5.9888 -1.9911 -1.1336 10 6 5.6869 -3.8278 -2.1955 11 7 4.8026 -4.6651 -2.6948 12 14 7.5122 -4.1877 -2.3630 13 1 8.1214 -4.2955 -1.0129 14 1 7.6995 -5.4669 -3.0936 15 1 8.1668 -3.0871 -3.1149 16 6 3.2525 -1.4716 0.7697 17 7 2.0430 -0.7372 1.1690 18 6 1.4972 -0.7338 2.4013 19 8 0.4966 -0.0841 2.6195 20 6 2.1301 -1.5374 3.5080 21 6 1.3317 -1.3642 4.7744 22 6 1.5302 -0.3773 5.7672 23 6 0.5990 -0.5856 6.7154 24 8 -0.1426 -1.6462 6.3561 25 6 0.2973 -2.1223 5.1798 26 1 -0.3633 0.5017 0.8969 27 1 -0.3633 0.5260 -0.8829 28 1 -0.3633 -1.0275 -0.0140 29 1 1.4512 -1.6495 -1.4391 30 1 2.1393 -0.1287 -2.1001 31 1 3.2733 -3.0313 -1.7884 32 1 5.0987 -5.4684 -3.1506 33 1 4.1081 -1.1174 1.3447 34 1 3.1089 -2.5395 0.9343 35 1 3.1505 -1.1906 3.6711 36 1 2.1446 -2.5911 3.2293 37 1 2.2828 0.3973 5.7634 38 1 0.4728 -0.0025 7.6155 39 1 -0.1103 -2.9705 4.6496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988693572.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:25 Heat of formation + Delta-G solvation = -23.539938 kcal Electronic energy + Delta-G solvation = -21471.843954 eV Core-core repulsion = 18187.778933 eV Total energy + Delta-G solvation = -3284.065021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.43212 -41.16729 -38.72087 -35.94776 -34.98005 -33.27354 -32.93009 -31.09191 -30.06668 -28.60832 -26.60502 -25.77105 -23.37472 -22.46956 -21.81553 -21.30526 -19.88689 -19.19632 -18.30618 -17.90542 -17.38843 -16.80762 -16.51806 -16.23135 -15.53932 -15.47200 -15.37603 -14.81217 -14.39795 -14.18638 -14.04472 -13.65938 -13.45958 -13.39231 -13.24619 -13.03403 -12.85526 -12.76789 -12.47833 -12.35877 -12.15682 -12.09365 -11.69890 -11.51905 -10.99805 -10.80938 -10.40630 -9.58380 -9.41666 -9.04832 -7.92639 -5.22699 0.88719 1.52573 1.53873 1.58619 1.60032 1.66491 2.16181 2.33430 2.59226 3.39038 3.52201 3.81758 3.85835 3.91102 3.94741 4.04352 4.16471 4.21476 4.34367 4.51258 4.52702 4.54491 4.60999 4.75808 4.77682 4.83691 4.90293 5.10522 5.14512 5.18694 5.26466 5.30373 5.34709 5.55271 5.56617 5.60077 6.21119 6.27984 6.60412 7.22337 7.35835 8.07619 8.31290 9.30111 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021212 B = 0.003932 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.714586 B = 7118.937987 C = 7976.852354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.136 3.864 3 H 0.083 0.917 4 C -0.126 4.126 5 C 0.164 3.836 6 H 0.072 0.928 7 N -0.724 5.724 8 C -0.244 4.244 9 H 0.082 0.918 10 C -0.070 4.070 11 N -0.968 5.968 12 Si 0.969 3.031 13 H -0.277 1.277 14 H -0.300 1.300 15 H -0.278 1.278 16 C 0.086 3.914 17 N -0.611 5.611 18 C 0.527 3.473 19 O -0.569 6.569 20 C -0.064 4.064 21 C -0.178 4.178 22 C -0.222 4.222 23 C -0.042 4.042 24 O -0.189 6.189 25 C -0.041 4.041 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.375 0.625 32 H 0.251 0.749 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.155 0.845 38 H 0.237 0.763 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 8.901 14.184 18.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.033 3.967 3 H 0.101 0.899 4 C -0.165 4.165 5 C 0.054 3.946 6 H 0.090 0.910 7 N -0.363 5.363 8 C -0.375 4.375 9 H 0.100 0.900 10 C -0.262 4.262 11 N -0.618 5.618 12 Si 0.798 3.202 13 H -0.203 1.203 14 H -0.227 1.227 15 H -0.204 1.204 16 C -0.040 4.040 17 N -0.345 5.345 18 C 0.317 3.683 19 O -0.449 6.449 20 C -0.103 4.103 21 C -0.180 4.180 22 C -0.241 4.241 23 C -0.109 4.109 24 O -0.085 6.085 25 C -0.109 4.109 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.208 0.792 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.173 0.827 38 H 0.253 0.747 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.304 9.129 14.526 18.647 hybrid contribution 0.953 -0.713 -0.653 1.358 sum -6.351 8.416 13.873 17.425 Atomic orbital electron populations 1.22051 0.93950 1.01797 1.03278 1.21921 0.95059 0.95615 0.84108 0.89902 1.23067 0.95966 1.00205 0.97220 1.21365 0.94667 0.89287 0.89275 0.90965 1.42509 1.04222 1.23482 1.66114 1.19629 0.84742 1.04032 1.29134 0.89990 1.25510 1.01381 0.97774 1.01554 1.69797 1.34054 1.13906 1.44063 0.85282 0.80530 0.76613 0.77734 1.20259 1.22696 1.20439 1.22974 0.85993 0.96033 0.98976 1.48686 1.28341 1.48362 1.09132 1.20620 0.83658 0.81634 0.82405 1.90604 1.26706 1.45264 1.82303 1.19985 0.99819 1.01671 0.88855 1.20046 1.00602 0.99421 0.97899 1.21955 1.03838 1.02487 0.95794 1.24652 0.93036 0.90783 1.02424 1.84055 1.51022 1.39282 1.34128 1.24193 0.97559 1.02409 0.86714 0.91400 0.90297 0.93952 0.91624 0.88790 0.79240 0.94055 0.90876 0.92217 0.86803 0.87171 0.82693 0.74701 0.76714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 8.71 71.98 0.63 -3.55 16 2 C 0.14 3.78 3.76 45.47 0.17 3.95 16 3 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 4 C -0.13 -3.74 6.13 31.98 0.20 -3.54 16 5 C 0.16 5.74 3.61 46.19 0.17 5.90 16 6 H 0.07 2.47 8.09 -2.39 -0.02 2.45 16 7 N -0.72 -33.21 5.15 -317.30 -1.64 -34.84 16 8 C -0.24 -12.43 9.96 84.03 0.84 -11.59 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 10 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 11 N -0.97 -56.54 13.06 21.65 0.28 -56.26 16 12 Si 0.97 43.67 29.55 68.60 2.03 45.70 16 13 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 15 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 16 C 0.09 2.68 6.25 86.73 0.54 3.22 16 17 N -0.61 -18.01 3.24 -788.12 -2.55 -20.57 16 18 C 0.53 15.85 7.62 87.66 0.67 16.52 16 19 O -0.57 -20.18 13.69 -3.02 -0.04 -20.22 16 20 C -0.06 -1.55 5.41 29.10 0.16 -1.39 16 21 C -0.18 -4.44 4.66 -19.94 -0.09 -4.53 16 22 C -0.22 -4.98 10.87 22.19 0.24 -4.74 16 23 C -0.04 -0.82 12.09 66.97 0.81 -0.01 16 24 O -0.19 -4.39 10.65 -2.60 -0.03 -4.41 16 25 C -0.04 -0.97 12.01 66.97 0.80 -0.16 16 26 H 0.07 2.10 5.89 -2.39 -0.01 2.09 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 2.11 7.92 -2.39 -0.02 2.09 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.38 18.84 7.76 -92.71 -0.72 18.12 16 32 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 33 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 2.04 8.03 -2.39 -0.02 2.02 16 35 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 38 H 0.24 2.38 8.06 -2.92 -0.02 2.36 16 39 H 0.22 3.94 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -65.60 328.24 3.98 -61.62 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.33 Total: 32.20 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.59 Total: -3.22 kcal Atomic # 7 Polarization: -107.76 SS G_CDS: -3.91 Total: -111.67 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.07 Total: -24.63 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -65.60 3.98 -61.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988693572.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.083 kcal (2) G-P(sol) polarization free energy of solvation -65.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds