Wall clock time and date at job start Tue Mar 31 2020 00:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.70231 * 2 1 4 4 C 1.53621 * 109.66606 * 120.59545 * 2 1 3 5 5 H 1.08992 * 109.43154 * 294.41829 * 4 2 1 6 6 N 1.46502 * 109.65987 * 54.53960 * 4 2 1 7 7 C 1.34776 * 120.00237 * 204.85020 * 6 4 2 8 8 O 1.21620 * 119.99818 * 0.02562 * 7 6 4 9 9 C 1.47379 * 120.00107 * 180.02562 * 7 6 4 10 10 C 1.47027 * 127.18876 * 180.02562 * 9 7 6 11 11 C 1.34173 * 105.95008 * 179.97438 * 10 9 7 12 12 O 1.34221 * 109.12789 * 0.02562 * 11 10 9 13 13 C 1.33654 * 110.90557 * 359.76037 * 12 11 10 14 14 C 1.53041 * 109.24376 * 174.54604 * 4 2 1 15 15 C 1.53042 * 109.53755 * 298.51130 * 14 4 2 16 16 C 1.53197 * 109.31056 * 61.36512 * 15 14 4 17 17 N 1.46924 * 108.77415 * 305.36136 * 16 15 14 18 18 C 1.36943 * 120.62995 * 233.58592 * 17 16 15 19 19 H 1.07999 * 119.99498 * 150.99752 * 18 17 16 20 20 C 1.38810 * 120.00156 * 330.99647 * 18 17 16 21 21 N 1.31620 * 119.99849 * 344.97838 * 20 18 17 22 22 Si 1.86793 * 119.99959 * 164.98010 * 20 18 17 23 23 H 1.48502 * 109.47084 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.47204 * 299.99556 * 22 20 18 25 25 H 1.48493 * 109.47556 * 59.99784 * 22 20 18 26 26 H 1.08997 * 109.47317 * 180.35312 * 1 2 3 27 27 H 1.09002 * 109.46620 * 300.35165 * 1 2 3 28 28 H 1.08999 * 109.47059 * 60.35252 * 1 2 3 29 29 H 0.97006 * 120.00410 * 24.85348 * 6 4 2 30 30 H 1.07999 * 127.02121 * 359.97438 * 10 9 7 31 31 H 1.08003 * 125.43566 * 179.97438 * 11 10 9 32 32 H 1.07998 * 125.79826 * 180.27214 * 13 12 11 33 33 H 1.08990 * 109.46171 * 178.49446 * 14 4 2 34 34 H 1.08995 * 109.44846 * 58.52159 * 14 4 2 35 35 H 1.08998 * 109.49938 * 301.41676 * 15 14 4 36 36 H 1.09004 * 109.52569 * 181.32617 * 15 14 4 37 37 H 1.09003 * 109.58227 * 185.57834 * 16 15 14 38 38 H 1.08999 * 109.70422 * 65.22304 * 16 15 14 39 39 H 0.96995 * 120.00006 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7363 1.2452 5 1 1.7689 -0.1772 2.1386 6 7 1.4592 -2.0769 1.3046 7 6 1.3429 -2.7099 2.4888 8 8 1.7255 -2.1679 3.5082 9 6 0.7521 -4.0587 2.5485 10 6 0.5497 -4.8881 3.7455 11 6 -0.0160 -6.0258 3.3144 12 8 -0.1722 -5.9623 1.9829 13 6 0.2743 -4.7966 1.5054 14 6 3.5712 -0.8499 1.1675 15 6 3.9615 -1.6628 -0.0690 16 6 3.4656 -0.9419 -1.3265 17 7 2.0225 -0.6995 -1.1945 18 6 1.1536 -1.1126 -2.1691 19 1 0.1370 -1.3709 -1.9119 20 6 1.5795 -1.1993 -3.4874 21 7 2.7005 -0.6165 -3.8565 22 14 0.5618 -2.1429 -4.7376 23 1 1.2282 -2.0850 -6.0634 24 1 0.4371 -3.5586 -4.3071 25 1 -0.7893 -1.5348 -4.8363 26 1 -0.3634 -1.0276 0.0063 27 1 -0.3633 0.5193 0.8869 28 1 -0.3633 0.5083 -0.8931 29 1 1.1537 -2.5091 0.4917 30 1 0.8045 -4.6336 4.7637 31 1 -0.2996 -6.8600 3.9391 32 1 0.2607 -4.4914 0.4695 33 1 3.9443 -1.3481 2.0622 34 1 4.0064 0.1471 1.0988 35 1 3.5060 -2.6515 -0.0130 36 1 5.0460 -1.7636 -0.1114 37 1 3.6531 -1.5637 -2.2020 38 1 3.9875 0.0088 -1.4350 39 1 2.9979 -0.6767 -4.7777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993056636.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:35 Heat of formation + Delta-G solvation = -19.898464 kcal Electronic energy + Delta-G solvation = -22587.535712 eV Core-core repulsion = 19303.628597 eV Total energy + Delta-G solvation = -3283.907115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.43305 -40.97324 -39.01758 -35.59982 -34.21443 -33.71807 -33.27457 -31.41497 -30.29578 -27.88459 -26.83083 -24.99827 -23.46672 -22.38962 -22.30237 -21.24365 -20.25558 -19.34716 -18.23147 -17.31881 -17.06737 -16.93697 -16.44742 -16.06928 -15.77490 -15.64921 -15.11448 -14.75007 -14.64806 -14.35703 -14.21820 -13.80297 -13.57663 -13.26542 -12.95093 -12.85105 -12.67952 -12.43089 -12.33824 -12.16288 -11.92738 -11.67140 -11.36904 -11.07065 -11.00581 -10.80465 -10.46166 -9.96977 -9.68403 -8.59450 -7.78901 -5.25909 0.40377 1.18116 1.53496 1.54588 1.60166 2.05020 2.32277 2.40725 2.56427 3.37367 3.60548 3.71027 3.81363 3.97860 4.08063 4.20102 4.22428 4.39912 4.56530 4.59633 4.67075 4.77366 4.81706 4.95839 4.99303 5.03511 5.06885 5.13659 5.23188 5.35348 5.38202 5.46443 5.56907 5.64700 5.76533 5.82604 6.02883 6.46391 6.67400 7.21496 7.28753 7.91631 8.45460 9.27453 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.006348 C = 0.005231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.091601 B = 4409.683096 C = 5351.283096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.157 3.843 3 H 0.032 0.968 4 C 0.144 3.856 5 H 0.078 0.922 6 N -0.691 5.691 7 C 0.582 3.418 8 O -0.588 6.588 9 C -0.264 4.264 10 C -0.194 4.194 11 C -0.023 4.023 12 O -0.178 6.178 13 C 0.035 3.965 14 C -0.116 4.116 15 C -0.125 4.125 16 C 0.179 3.821 17 N -0.595 5.595 18 C -0.248 4.248 19 H 0.083 0.917 20 C -0.049 4.049 21 N -0.936 5.936 22 Si 0.959 3.041 23 H -0.306 1.306 24 H -0.272 1.272 25 H -0.279 1.279 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.408 0.592 30 H 0.158 0.842 31 H 0.251 0.749 32 H 0.230 0.770 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.058 0.942 38 H -0.006 1.006 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.936 -8.991 11.214 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.050 3.950 3 H 0.050 0.950 4 C 0.037 3.963 5 H 0.096 0.904 6 N -0.341 5.341 7 C 0.371 3.629 8 O -0.471 6.471 9 C -0.268 4.268 10 C -0.214 4.214 11 C -0.089 4.089 12 O -0.072 6.072 13 C -0.036 4.036 14 C -0.155 4.155 15 C -0.164 4.164 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.378 4.378 19 H 0.101 0.899 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.788 3.212 23 H -0.233 1.233 24 H -0.198 1.198 25 H -0.205 1.205 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.245 0.755 30 H 0.176 0.824 31 H 0.267 0.733 32 H 0.246 0.754 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.012 0.988 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.741 -8.809 11.580 15.303 hybrid contribution 0.015 0.068 -1.268 1.270 sum -4.726 -8.742 10.312 14.321 Atomic orbital electron populations 1.21702 0.94125 1.01825 1.00886 1.20932 0.94571 0.93385 0.86122 0.95000 1.21412 0.92873 0.83239 0.98772 0.90412 1.45762 1.61531 1.18039 1.08770 1.17620 0.77575 0.84539 0.83173 1.90705 1.52503 1.68410 1.35459 1.21626 1.12082 0.97152 0.95990 1.22939 1.05019 0.94320 0.99088 1.24680 1.02637 1.01095 0.80445 1.83838 1.64440 1.35003 1.23934 1.24859 0.95689 0.83210 0.99805 1.21722 0.95572 1.00584 0.97575 1.21949 0.99683 0.99030 0.95778 1.20593 0.83320 0.95804 0.94971 1.44354 1.02867 1.65397 1.19286 1.19480 0.95416 1.36508 0.86431 0.89950 1.25779 0.98832 1.00944 0.98839 1.70170 1.25258 1.46216 1.16625 0.85472 0.78167 0.79423 0.78125 1.23256 1.19812 1.20505 0.92341 0.91932 0.93217 0.75534 0.82411 0.73297 0.75406 0.92924 0.91392 0.92895 0.92101 0.92352 0.98796 0.94513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 7.75 71.98 0.56 -3.77 16 2 C 0.16 5.94 3.22 45.12 0.15 6.08 16 3 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.14 4.96 2.33 45.21 0.11 5.06 16 5 H 0.08 2.72 7.58 -2.39 -0.02 2.70 16 6 N -0.69 -22.34 3.47 -444.78 -1.54 -23.88 16 7 C 0.58 19.57 7.78 86.65 0.67 20.24 16 8 O -0.59 -23.57 16.65 -4.09 -0.07 -23.64 16 9 C -0.26 -7.33 6.31 -18.99 -0.12 -7.45 16 10 C -0.19 -4.52 11.01 23.65 0.26 -4.26 16 11 C -0.02 -0.39 12.03 66.89 0.80 0.41 16 12 O -0.18 -3.63 10.52 4.40 0.05 -3.59 16 13 C 0.03 0.79 11.61 67.39 0.78 1.57 16 14 C -0.12 -4.02 5.57 30.62 0.17 -3.85 16 15 C -0.13 -4.63 5.93 30.67 0.18 -4.45 16 16 C 0.18 8.12 5.28 86.36 0.46 8.57 16 17 N -0.60 -26.51 2.64 -674.41 -1.78 -28.29 16 18 C -0.25 -11.92 8.59 84.03 0.72 -11.20 16 19 H 0.08 3.70 6.22 -2.91 -0.02 3.68 16 20 C -0.05 -2.50 4.96 84.86 0.42 -2.08 16 21 N -0.94 -52.55 11.14 21.65 0.24 -52.31 16 22 Si 0.96 41.69 29.58 68.60 2.03 43.72 16 23 H -0.31 -13.92 7.11 99.48 0.71 -13.22 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H 0.06 1.90 6.42 -2.39 -0.02 1.88 16 27 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.83 7.62 -2.39 -0.02 1.81 16 29 H 0.41 12.84 6.77 -92.70 -0.63 12.21 16 30 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.25 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.23 4.21 7.47 -2.91 -0.02 4.19 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.95 7.53 -2.39 -0.02 1.94 16 36 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.06 3.01 6.06 -2.39 -0.01 3.00 16 38 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 39 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -64.15 316.65 4.52 -59.63 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.44 Total: 23.47 kcal Atomic # 6 Polarization: -0.28 SS G_CDS: 5.16 Total: 4.88 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -3.08 Total: -104.48 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.02 Total: -27.23 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -64.15 4.52 -59.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993056636.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.734 kcal (2) G-P(sol) polarization free energy of solvation -64.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds