Wall clock time and date at job start Tue Mar 31 2020 00:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58321 * 2 1 4 4 C 1.53187 * 109.58548 * 239.56699 * 2 1 3 5 5 H 1.08999 * 109.50169 * 305.56071 * 4 2 1 6 6 N 1.46505 * 109.49642 * 65.62851 * 4 2 1 7 7 C 1.34780 * 119.99998 * 204.99630 * 6 4 2 8 8 O 1.21611 * 119.99818 * 0.02562 * 7 6 4 9 9 C 1.47379 * 120.00002 * 180.02562 * 7 6 4 10 10 C 1.47010 * 127.19017 * 179.71117 * 9 7 6 11 11 C 1.34187 * 105.95062 * 179.88921 * 10 9 7 12 12 O 1.34204 * 109.12497 * 0.37727 * 11 10 9 13 13 C 1.33656 * 110.90955 * 359.74341 * 12 11 10 14 14 C 1.53047 * 109.31118 * 185.57788 * 4 2 1 15 15 C 1.53034 * 109.53791 * 61.36840 * 14 4 2 16 16 C 1.53620 * 109.24331 * 298.51120 * 15 14 4 17 17 N 1.46929 * 108.54310 * 54.85714 * 16 15 14 18 18 C 1.36937 * 120.63458 * 126.37228 * 17 16 15 19 19 H 1.07993 * 120.00470 * 210.87571 * 18 17 16 20 20 C 1.38811 * 119.99692 * 30.86992 * 18 17 16 21 21 N 1.31621 * 119.99949 * 23.59535 * 20 18 17 22 22 Si 1.86799 * 120.00067 * 203.59340 * 20 18 17 23 23 H 1.48499 * 109.47314 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47155 * 59.99990 * 22 20 18 25 25 H 1.48502 * 109.47005 * 300.00250 * 22 20 18 26 26 H 1.09002 * 109.47329 * 299.71749 * 1 2 3 27 27 H 1.08997 * 109.47409 * 59.72112 * 1 2 3 28 28 H 1.09005 * 109.47137 * 179.72229 * 1 2 3 29 29 H 0.96996 * 120.00080 * 24.99790 * 6 4 2 30 30 H 1.08006 * 127.02695 * 359.97438 * 10 9 7 31 31 H 1.08004 * 125.43428 * 180.12119 * 11 10 9 32 32 H 1.08002 * 125.80162 * 179.97438 * 13 12 11 33 33 H 1.09008 * 109.45809 * 181.38794 * 14 4 2 34 34 H 1.08997 * 109.45882 * 301.34698 * 14 4 2 35 35 H 1.09001 * 109.49939 * 58.58405 * 15 14 4 36 36 H 1.08998 * 109.50014 * 178.68247 * 15 14 4 37 37 H 1.09003 * 109.74077 * 295.12087 * 16 15 14 38 38 H 1.09005 * 109.66990 * 174.54764 * 16 15 14 39 39 H 0.96996 * 120.00418 * 5.82963 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7310 -1.2444 5 1 1.6025 -1.7268 -1.2893 6 7 1.6705 0.0235 -2.4435 7 6 1.5472 -0.6097 -3.6269 8 8 1.7451 -1.8074 -3.6992 9 6 1.1725 0.1495 -4.8333 10 6 1.0005 -0.3753 -6.1957 11 6 0.6577 0.6763 -6.9554 12 8 0.6152 1.7772 -6.1890 13 6 0.9185 1.4870 -4.9201 14 6 3.5675 -0.8495 -1.1689 15 6 3.9569 -1.6656 0.0657 16 6 3.4656 -0.9403 1.3276 17 7 2.0225 -0.6981 1.1954 18 6 1.1536 -1.1099 2.1704 19 1 0.1459 -1.3974 1.9095 20 6 1.5682 -1.1578 3.4943 21 7 2.5720 -0.4077 3.8971 22 14 0.7015 -2.2866 4.7042 23 1 1.3293 -2.1526 6.0433 24 1 0.8185 -3.6925 4.2406 25 1 -0.7328 -1.9117 4.7907 26 1 -0.3634 0.5094 0.8925 27 1 -0.3634 0.5181 -0.8874 28 1 -0.3634 -1.0277 -0.0050 29 1 1.5123 0.9787 -2.3858 30 1 1.1234 -1.3985 -6.5189 31 1 0.4531 0.6429 -8.0154 32 1 0.9567 2.1917 -4.1026 33 1 3.9378 -1.3476 -2.0651 34 1 4.0061 0.1459 -1.0994 35 1 3.4983 -2.6528 0.0088 36 1 5.0412 -1.7695 0.1061 37 1 3.9877 0.0108 1.4324 38 1 3.6531 -1.5609 2.2040 39 1 2.9671 0.2395 3.2923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993056637.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:38 Heat of formation + Delta-G solvation = -28.434930 kcal Electronic energy + Delta-G solvation = -22010.291105 eV Core-core repulsion = 18726.013821 eV Total energy + Delta-G solvation = -3284.277284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.46445 -40.99732 -39.27926 -36.12225 -34.49106 -33.84040 -33.36895 -31.32592 -30.22411 -27.94103 -26.82321 -25.06163 -23.27093 -22.59355 -22.34817 -21.32985 -20.91813 -19.39851 -18.86519 -17.35676 -17.10492 -17.05224 -16.41530 -15.97661 -15.94408 -15.62724 -15.46482 -15.05729 -14.83334 -14.62052 -14.21038 -13.84228 -13.55627 -13.32307 -13.04966 -12.99045 -12.76449 -12.56248 -12.06820 -11.94652 -11.92125 -11.82746 -11.72136 -11.23641 -11.01079 -10.85362 -10.47537 -10.11925 -9.72578 -8.90162 -8.18278 -5.39462 0.36514 1.13905 1.59200 1.66179 1.84494 1.97048 2.14860 2.32298 2.67659 3.24676 3.47268 3.63740 3.77524 3.81638 3.92370 4.06169 4.15361 4.22265 4.36678 4.50390 4.55276 4.65531 4.70742 4.77735 4.82703 4.91873 4.99846 5.01300 5.08913 5.17311 5.24558 5.32147 5.33587 5.37400 5.54498 5.94205 5.99537 6.44749 6.53527 7.07837 7.20291 7.79959 8.24362 9.05432 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033358 B = 0.004058 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.188783 B = 6897.926395 C = 7154.031749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.166 3.834 3 H 0.039 0.961 4 C 0.148 3.852 5 H 0.053 0.947 6 N -0.701 5.701 7 C 0.583 3.417 8 O -0.589 6.589 9 C -0.269 4.269 10 C -0.201 4.201 11 C -0.020 4.020 12 O -0.175 6.175 13 C 0.046 3.954 14 C -0.110 4.110 15 C -0.125 4.125 16 C 0.156 3.844 17 N -0.608 5.608 18 C -0.348 4.348 19 H 0.055 0.945 20 C -0.071 4.071 21 N -0.943 5.943 22 Si 1.108 2.892 23 H -0.292 1.292 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.047 0.953 27 H 0.076 0.924 28 H 0.035 0.965 29 H 0.412 0.588 30 H 0.151 0.849 31 H 0.249 0.751 32 H 0.248 0.752 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.015 0.985 38 H 0.043 0.957 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 6.637 -19.842 21.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.060 3.940 3 H 0.057 0.943 4 C 0.042 3.958 5 H 0.072 0.928 6 N -0.352 5.352 7 C 0.373 3.627 8 O -0.471 6.471 9 C -0.273 4.273 10 C -0.220 4.220 11 C -0.086 4.086 12 O -0.069 6.069 13 C -0.024 4.024 14 C -0.148 4.148 15 C -0.165 4.165 16 C 0.030 3.970 17 N -0.333 5.333 18 C -0.477 4.477 19 H 0.073 0.927 20 C -0.267 4.267 21 N -0.585 5.585 22 Si 0.934 3.066 23 H -0.218 1.218 24 H -0.212 1.212 25 H -0.201 1.201 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.054 0.946 29 H 0.249 0.751 30 H 0.169 0.831 31 H 0.265 0.735 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.096 0.904 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.787 5.515 -18.422 19.431 hybrid contribution 0.184 0.369 -1.078 1.154 sum -2.603 5.883 -19.501 20.534 Atomic orbital electron populations 1.21697 0.94496 1.00833 1.01170 1.20725 0.94326 0.93467 0.85530 0.94349 1.21286 0.94960 0.95481 0.84108 0.92827 1.45699 1.70000 1.12566 1.06961 1.17730 0.75803 0.86287 0.82893 1.90754 1.53105 1.16863 1.86368 1.21509 1.15559 0.95405 0.94838 1.22954 1.06457 1.01466 0.91160 1.24603 1.03589 0.81903 0.98466 1.83843 1.67920 1.36619 1.18533 1.25056 0.96298 0.95194 0.85898 1.21691 0.95233 1.00580 0.97326 1.22002 1.00575 0.98645 0.95257 1.20944 0.83989 0.96199 0.95837 1.44333 1.02748 1.66510 1.19690 1.20120 0.97156 1.42028 0.88424 0.92689 1.27044 1.00440 1.01380 0.97885 1.70883 1.28188 1.21573 1.37809 0.82928 0.75013 0.74681 0.73985 1.21849 1.21200 1.20107 0.93417 0.90480 0.94591 0.75088 0.83105 0.73502 0.73623 0.92669 0.90991 0.93748 0.90429 0.96658 0.93802 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.54 7.84 71.98 0.56 -3.98 16 2 C 0.17 6.47 3.03 44.97 0.14 6.60 16 3 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 4 C 0.15 5.27 2.00 45.07 0.09 5.36 16 5 H 0.05 2.32 7.58 -2.39 -0.02 2.30 16 6 N -0.70 -19.18 4.58 -445.46 -2.04 -21.22 16 7 C 0.58 17.98 7.78 86.65 0.67 18.66 16 8 O -0.59 -23.95 16.64 -4.07 -0.07 -24.02 16 9 C -0.27 -6.22 6.31 -19.00 -0.12 -6.34 16 10 C -0.20 -4.15 11.01 23.65 0.26 -3.89 16 11 C -0.02 -0.27 12.03 66.90 0.80 0.54 16 12 O -0.17 -2.55 10.52 4.55 0.05 -2.50 16 13 C 0.05 0.69 11.61 67.39 0.78 1.47 16 14 C -0.11 -3.80 5.46 30.62 0.17 -3.63 16 15 C -0.13 -4.85 6.10 30.81 0.19 -4.66 16 16 C 0.16 7.28 4.74 86.51 0.41 7.69 16 17 N -0.61 -29.61 2.80 -674.39 -1.89 -31.51 16 18 C -0.35 -18.92 8.43 84.03 0.71 -18.21 16 19 H 0.06 3.00 6.34 -2.91 -0.02 2.98 16 20 C -0.07 -3.96 4.70 84.86 0.40 -3.56 16 21 N -0.94 -56.46 12.51 21.65 0.27 -56.19 16 22 Si 1.11 50.98 29.98 68.60 2.06 53.04 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 26 H 0.05 1.89 7.64 -2.39 -0.02 1.87 16 27 H 0.08 2.16 7.80 -2.39 -0.02 2.14 16 28 H 0.03 1.43 7.43 -2.38 -0.02 1.41 16 29 H 0.41 7.99 7.57 -92.71 -0.70 7.28 16 30 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 31 H 0.25 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.25 1.53 7.47 -2.91 -0.02 1.51 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.02 0.72 7.84 -2.39 -0.02 0.70 16 38 H 0.04 2.34 6.50 -2.38 -0.02 2.32 16 39 H 0.26 15.49 6.73 -92.71 -0.62 14.87 16 Total: -1.00 -74.79 319.15 3.94 -70.85 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.50 Total: 15.49 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 5.06 Total: -3.95 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -3.66 Total: -108.91 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.02 Total: -26.52 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.06 Total: 53.04 kcal Total: -74.79 3.94 -70.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993056637.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.412 kcal (2) G-P(sol) polarization free energy of solvation -74.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds