Wall clock time and date at job start Tue Mar 31 2020 00:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47507 * 2 1 4 4 C 1.50700 * 109.47505 * 239.99744 * 2 1 3 5 5 O 1.21285 * 120.00211 * 268.33111 * 4 2 1 6 6 N 1.34777 * 119.99826 * 88.32308 * 4 2 1 7 7 C 1.47423 * 125.64665 * 184.74825 * 6 4 2 8 8 C 1.54906 * 104.83272 * 204.09476 * 7 6 4 9 9 C 1.55160 * 101.58086 * 322.99108 * 8 7 6 10 10 H 1.09004 * 110.71582 * 276.95993 * 9 8 7 11 11 N 1.46500 * 110.72265 * 153.86395 * 9 8 7 12 12 C 1.36941 * 119.99804 * 86.45054 * 11 9 8 13 13 H 1.07996 * 120.00115 * 0.02562 * 12 11 9 14 14 C 1.38809 * 119.99911 * 180.02562 * 12 11 9 15 15 N 1.31620 * 120.00135 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00072 * 0.02562 * 14 12 11 17 17 H 1.48491 * 109.47094 * 89.99848 * 16 14 12 18 18 H 1.48503 * 109.47256 * 210.00187 * 16 14 12 19 19 H 1.48501 * 109.46939 * 329.99882 * 16 14 12 20 20 C 1.47020 * 125.64706 * 4.44284 * 6 4 2 21 21 C 1.50705 * 109.46834 * 119.99955 * 2 1 3 22 22 C 1.34516 * 125.78757 * 240.00047 * 21 2 1 23 23 C 1.41382 * 106.83747 * 180.02562 * 22 21 2 24 24 C 1.34508 * 106.84575 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.79287 * 59.69109 * 21 2 1 26 26 H 1.08999 * 109.46864 * 175.75068 * 1 2 3 27 27 H 1.08998 * 109.47192 * 295.74917 * 1 2 3 28 28 H 1.08998 * 109.46871 * 55.75046 * 1 2 3 29 29 H 1.09005 * 110.36946 * 322.93050 * 7 6 4 30 30 H 1.08994 * 110.36625 * 85.14374 * 7 6 4 31 31 H 1.09009 * 111.00663 * 81.06278 * 8 7 6 32 32 H 1.08996 * 111.00542 * 204.91878 * 8 7 6 33 33 H 0.96997 * 120.00370 * 266.45909 * 11 9 8 34 34 H 0.97001 * 119.99719 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.87859 * 298.38884 * 20 6 4 36 36 H 1.08995 * 109.88262 * 59.55782 * 20 6 4 37 37 H 1.08003 * 126.58088 * 359.95979 * 22 21 2 38 38 H 1.08002 * 126.57831 * 180.02562 * 23 22 21 39 39 H 1.08001 * 125.79104 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2634 -1.9005 -1.1917 6 7 2.2249 -0.0234 -2.3738 7 6 2.6153 -0.6057 -3.6707 8 6 3.2903 0.5568 -4.4403 9 6 2.4230 1.7661 -4.0012 10 1 1.5189 1.8322 -4.6066 11 7 3.1907 3.0112 -4.0820 12 6 3.2492 3.7042 -5.2616 13 1 2.7291 3.3332 -6.1323 14 6 3.9771 4.8837 -5.3383 15 7 4.0338 5.5495 -6.4722 16 14 4.8774 5.5252 -3.8325 17 1 6.2539 4.9688 -3.8044 18 1 4.9438 7.0077 -3.8896 19 1 4.1502 5.1092 -2.6064 20 6 2.0741 1.4300 -2.5359 21 6 2.0323 -0.7104 1.2305 22 6 2.8088 -0.1719 2.1878 23 6 3.0385 -1.1851 3.1468 24 6 2.3882 -2.2819 2.7186 25 8 1.7757 -1.9868 1.5603 26 1 -0.3633 -1.0248 -0.0761 27 1 -0.3633 0.4464 0.9256 28 1 -0.3633 0.5784 -0.8495 29 1 3.3213 -1.4230 -3.5225 30 1 1.7353 -0.9585 -4.2084 31 1 4.3262 0.6843 -4.1257 32 1 3.2271 0.4013 -5.5172 33 1 3.6577 3.3447 -3.2999 34 1 4.5422 6.3739 -6.5256 35 1 1.0462 1.7222 -2.3211 36 1 2.7576 1.9506 -1.8652 37 1 3.1855 0.8398 2.2176 38 1 3.6233 -1.0953 4.0504 39 1 2.3595 -3.2364 3.2230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019373768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:45 Heat of formation + Delta-G solvation = -0.538925 kcal Electronic energy + Delta-G solvation = -21612.589552 eV Core-core repulsion = 18329.521930 eV Total energy + Delta-G solvation = -3283.067622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.66816 -40.00001 -37.53778 -34.39069 -34.18965 -32.92319 -31.60667 -30.06358 -28.67410 -28.06443 -25.04075 -23.50989 -22.58557 -21.83442 -20.77686 -20.23780 -19.16354 -17.89393 -17.34071 -17.12520 -16.15437 -16.01091 -15.20833 -14.77307 -14.52034 -14.16999 -13.86921 -13.53697 -13.36381 -12.89036 -12.86862 -12.73384 -12.67011 -12.48452 -12.13421 -11.87968 -11.71571 -11.67069 -11.45454 -10.95936 -10.80134 -10.58676 -10.18152 -10.01623 -9.78182 -9.68301 -9.05338 -8.57668 -8.54576 -7.42175 -5.87841 -3.26048 1.62326 2.46364 2.57719 2.92718 3.07252 3.28770 3.32427 3.38860 4.34140 4.38227 4.48881 4.77471 4.83461 4.90512 4.96936 5.04958 5.11075 5.17463 5.40295 5.44139 5.49813 5.51140 5.58989 5.68272 5.72537 5.78743 5.85964 5.87980 6.00661 6.03262 6.21511 6.33524 6.38423 6.52688 6.74222 7.08123 7.54828 7.85975 8.15419 8.30258 9.06600 9.78770 9.96234 11.29845 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.004132 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.432451 B = 6773.968129 C = 7416.263792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 H 0.119 0.881 4 C 0.532 3.468 5 O -0.534 6.534 6 N -0.612 5.612 7 C 0.105 3.895 8 C -0.153 4.153 9 C 0.178 3.822 10 H 0.074 0.926 11 N -0.740 5.740 12 C -0.250 4.250 13 H 0.093 0.907 14 C 0.009 3.991 15 N -0.929 5.929 16 Si 0.884 3.116 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.277 1.277 20 C 0.086 3.914 21 C 0.010 3.990 22 C -0.209 4.209 23 C -0.217 4.217 24 C -0.041 4.041 25 O -0.155 6.155 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.363 0.637 34 H 0.261 0.739 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.850 -12.038 16.434 21.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.049 4.049 3 H 0.137 0.863 4 C 0.319 3.681 5 O -0.410 6.410 6 N -0.346 5.346 7 C -0.017 4.017 8 C -0.194 4.194 9 C 0.067 3.933 10 H 0.092 0.908 11 N -0.383 5.383 12 C -0.380 4.380 13 H 0.111 0.889 14 C -0.187 4.187 15 N -0.576 5.576 16 Si 0.714 3.286 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.203 1.203 20 C -0.038 4.038 21 C -0.041 4.041 22 C -0.228 4.228 23 C -0.236 4.236 24 C -0.109 4.109 25 O -0.049 6.049 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.196 0.804 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -5.950 -12.794 16.086 21.398 hybrid contribution 1.017 0.757 1.206 1.750 sum -4.933 -12.037 17.292 21.639 Atomic orbital electron populations 1.21731 0.90908 1.03672 1.03455 1.19879 0.98531 0.99029 0.87466 0.86283 1.19964 0.77964 0.87046 0.83126 1.90723 1.51303 1.15031 1.83986 1.48465 1.67881 1.08768 1.09472 1.22309 0.99275 0.97343 0.82787 1.23526 1.00587 0.94974 1.00323 1.21140 0.94544 0.86360 0.91286 0.90768 1.42699 1.59819 1.24152 1.11581 1.19023 1.27245 1.02949 0.88778 0.88942 1.24674 1.00088 0.97390 0.96557 1.69695 1.45499 1.18016 1.24410 0.86576 0.80278 0.78464 0.83306 1.20983 1.21593 1.20316 1.22486 1.01338 0.79780 1.00158 1.21646 1.01940 0.82983 0.97539 1.21587 1.03793 1.01450 0.95973 1.21777 1.05895 0.93543 1.02433 1.24052 0.99075 1.00726 0.87075 1.84087 1.58346 1.27638 1.34841 0.91358 0.90817 0.90826 0.90922 0.91546 0.90734 0.89970 0.80402 0.92871 0.90951 0.91302 0.83422 0.83525 0.78257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.16 37.16 0.34 -1.04 16 2 C -0.03 -0.33 2.73 -92.92 -0.25 -0.59 16 3 H 0.12 1.21 7.09 -51.93 -0.37 0.84 16 4 C 0.53 8.04 6.91 -10.99 -0.08 7.97 16 5 O -0.53 -9.93 16.11 -6.31 -0.10 -10.03 16 6 N -0.61 -8.82 3.33 -170.52 -0.57 -9.38 16 7 C 0.11 1.51 6.93 -2.53 -0.02 1.49 16 8 C -0.15 -2.42 6.77 -24.58 -0.17 -2.58 16 9 C 0.18 3.02 3.58 -66.09 -0.24 2.78 16 10 H 0.07 1.27 8.12 -51.93 -0.42 0.85 16 11 N -0.74 -15.91 5.06 -51.64 -0.26 -16.18 16 12 C -0.25 -6.59 10.46 -15.06 -0.16 -6.74 16 13 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 14 C 0.01 0.26 5.50 -17.43 -0.10 0.17 16 15 N -0.93 -28.04 13.97 55.49 0.78 -27.27 16 16 Si 0.88 20.98 27.74 -169.99 -4.71 16.26 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 20 C 0.09 1.20 5.86 -3.06 -0.02 1.18 16 21 C 0.01 0.13 5.49 -35.62 -0.20 -0.06 16 22 C -0.21 -2.47 10.78 -39.70 -0.43 -2.90 16 23 C -0.22 -2.32 10.91 -39.70 -0.43 -2.75 16 24 C -0.04 -0.44 12.09 29.41 0.36 -0.09 16 25 O -0.15 -2.15 10.06 -6.15 -0.06 -2.22 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.65 7.90 -51.93 -0.41 0.24 16 29 H 0.07 1.07 7.99 -51.93 -0.42 0.66 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.36 7.67 5.38 -40.82 -0.22 7.45 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.07 0.86 7.90 -51.93 -0.41 0.45 16 36 H 0.07 0.94 7.44 -51.93 -0.39 0.56 16 37 H 0.15 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.20 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 327.23 15.07 4.93 4.93 Total: -1.00 -32.93 327.23 -6.99 -39.92 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.61 Total: 7.13 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.38 Total: -3.17 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.05 Total: -52.82 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: -0.16 Total: -12.25 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.93 -6.99 -39.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019373768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.379 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds