Wall clock time and date at job start Tue Mar 31 2020 00:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47507 * 2 1 4 4 C 1.50700 * 109.47505 * 239.99744 * 2 1 3 5 5 O 1.21285 * 120.00211 * 268.33111 * 4 2 1 6 6 N 1.34777 * 119.99826 * 88.32308 * 4 2 1 7 7 C 1.47423 * 125.64665 * 184.74825 * 6 4 2 8 8 C 1.54906 * 104.83272 * 204.09476 * 7 6 4 9 9 C 1.55160 * 101.58086 * 322.99108 * 8 7 6 10 10 H 1.09004 * 110.71582 * 276.95993 * 9 8 7 11 11 N 1.46500 * 110.72265 * 153.86395 * 9 8 7 12 12 C 1.36941 * 119.99804 * 86.45054 * 11 9 8 13 13 H 1.07996 * 120.00115 * 0.02562 * 12 11 9 14 14 C 1.38809 * 119.99911 * 180.02562 * 12 11 9 15 15 N 1.31620 * 120.00135 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00072 * 0.02562 * 14 12 11 17 17 H 1.48491 * 109.47094 * 89.99848 * 16 14 12 18 18 H 1.48503 * 109.47256 * 210.00187 * 16 14 12 19 19 H 1.48501 * 109.46939 * 329.99882 * 16 14 12 20 20 C 1.47020 * 125.64706 * 4.44284 * 6 4 2 21 21 C 1.50705 * 109.46834 * 119.99955 * 2 1 3 22 22 C 1.34516 * 125.78757 * 240.00047 * 21 2 1 23 23 C 1.41382 * 106.83747 * 180.02562 * 22 21 2 24 24 C 1.34508 * 106.84575 * 359.97438 * 23 22 21 25 25 O 1.34302 * 125.79287 * 59.69109 * 21 2 1 26 26 H 1.08999 * 109.46864 * 175.75068 * 1 2 3 27 27 H 1.08998 * 109.47192 * 295.74917 * 1 2 3 28 28 H 1.08998 * 109.46871 * 55.75046 * 1 2 3 29 29 H 1.09005 * 110.36946 * 322.93050 * 7 6 4 30 30 H 1.08994 * 110.36625 * 85.14374 * 7 6 4 31 31 H 1.09009 * 111.00663 * 81.06278 * 8 7 6 32 32 H 1.08996 * 111.00542 * 204.91878 * 8 7 6 33 33 H 0.96997 * 120.00370 * 266.45909 * 11 9 8 34 34 H 0.97001 * 119.99719 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.87859 * 298.38884 * 20 6 4 36 36 H 1.08995 * 109.88262 * 59.55782 * 20 6 4 37 37 H 1.08003 * 126.58088 * 359.95979 * 22 21 2 38 38 H 1.08002 * 126.57831 * 180.02562 * 23 22 21 39 39 H 1.08001 * 125.79104 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2634 -1.9005 -1.1917 6 7 2.2249 -0.0234 -2.3738 7 6 2.6153 -0.6057 -3.6707 8 6 3.2903 0.5568 -4.4403 9 6 2.4230 1.7661 -4.0012 10 1 1.5189 1.8322 -4.6066 11 7 3.1907 3.0112 -4.0820 12 6 3.2492 3.7042 -5.2616 13 1 2.7291 3.3332 -6.1323 14 6 3.9771 4.8837 -5.3383 15 7 4.0338 5.5495 -6.4722 16 14 4.8774 5.5252 -3.8325 17 1 6.2539 4.9688 -3.8044 18 1 4.9438 7.0077 -3.8896 19 1 4.1502 5.1092 -2.6064 20 6 2.0741 1.4300 -2.5359 21 6 2.0323 -0.7104 1.2305 22 6 2.8088 -0.1719 2.1878 23 6 3.0385 -1.1851 3.1468 24 6 2.3882 -2.2819 2.7186 25 8 1.7757 -1.9868 1.5603 26 1 -0.3633 -1.0248 -0.0761 27 1 -0.3633 0.4464 0.9256 28 1 -0.3633 0.5784 -0.8495 29 1 3.3213 -1.4230 -3.5225 30 1 1.7353 -0.9585 -4.2084 31 1 4.3262 0.6843 -4.1257 32 1 3.2271 0.4013 -5.5172 33 1 3.6577 3.3447 -3.2999 34 1 4.5422 6.3739 -6.5256 35 1 1.0462 1.7222 -2.3211 36 1 2.7576 1.9506 -1.8652 37 1 3.1855 0.8398 2.2176 38 1 3.6233 -1.0953 4.0504 39 1 2.3595 -3.2364 3.2230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019373768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:45 Heat of formation + Delta-G solvation = -21.682633 kcal Electronic energy + Delta-G solvation = -21613.506412 eV Core-core repulsion = 18329.521930 eV Total energy + Delta-G solvation = -3283.984482 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.52648 -41.17833 -38.85037 -35.96677 -35.27322 -33.77627 -33.43562 -31.43571 -29.54873 -29.41763 -26.07249 -25.18296 -23.82784 -22.67795 -21.88475 -21.52084 -20.27681 -19.70129 -18.37530 -18.15171 -17.41081 -16.97139 -16.54199 -16.13347 -15.72874 -15.58618 -15.13777 -14.78182 -14.45771 -14.41472 -13.95324 -13.69693 -13.59613 -13.51018 -13.45517 -13.19227 -13.07903 -12.69999 -12.60623 -12.55343 -12.25132 -12.16246 -11.78964 -11.68356 -11.00434 -10.96302 -10.79125 -9.74066 -9.41500 -9.31778 -7.99590 -5.34838 0.75518 1.41358 1.44838 1.45357 1.52183 1.66027 1.92634 2.16408 2.51492 3.24970 3.33202 3.51642 3.60690 3.76953 3.93453 4.00734 4.06545 4.19170 4.27241 4.30601 4.33269 4.45359 4.63233 4.71411 4.73972 4.81354 4.90898 4.97044 5.00543 5.07774 5.12324 5.20731 5.27008 5.38657 5.61159 5.80079 6.23466 6.24376 6.40727 7.00824 7.09392 7.82821 8.01292 9.21389 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024123 B = 0.004132 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.432451 B = 6773.968129 C = 7416.263792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.024 4.024 3 H 0.141 0.859 4 C 0.529 3.471 5 O -0.575 6.575 6 N -0.611 5.611 7 C 0.110 3.890 8 C -0.146 4.146 9 C 0.169 3.831 10 H 0.074 0.926 11 N -0.742 5.742 12 C -0.229 4.229 13 H 0.062 0.938 14 C -0.061 4.061 15 N -0.983 5.983 16 Si 0.950 3.050 17 H -0.285 1.285 18 H -0.299 1.299 19 H -0.242 1.242 20 C 0.096 3.904 21 C -0.019 4.019 22 C -0.213 4.213 23 C -0.227 4.227 24 C -0.048 4.048 25 O -0.182 6.182 26 H 0.051 0.949 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.368 0.632 34 H 0.257 0.743 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.165 0.835 38 H 0.171 0.829 39 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 -12.214 19.200 23.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 H 0.159 0.841 4 C 0.318 3.682 5 O -0.454 6.454 6 N -0.344 5.344 7 C -0.012 4.012 8 C -0.187 4.187 9 C 0.059 3.941 10 H 0.092 0.908 11 N -0.385 5.385 12 C -0.359 4.359 13 H 0.080 0.920 14 C -0.253 4.253 15 N -0.634 5.634 16 Si 0.777 3.223 17 H -0.211 1.211 18 H -0.226 1.226 19 H -0.166 1.166 20 C -0.028 4.028 21 C -0.069 4.069 22 C -0.232 4.232 23 C -0.245 4.245 24 C -0.115 4.115 25 O -0.078 6.078 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.202 0.798 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -6.339 -13.008 18.892 23.797 hybrid contribution 1.102 0.684 0.307 1.333 sum -5.237 -12.324 19.199 23.407 Atomic orbital electron populations 1.21736 0.89421 1.03121 1.04992 1.19976 0.99678 0.99378 0.85414 0.84125 1.20566 0.77093 0.86685 0.83808 1.90701 1.53143 1.16946 1.84637 1.48503 1.67522 1.08987 1.09367 1.22237 0.99604 0.96425 0.82954 1.23359 0.99761 0.95126 1.00414 1.21330 0.94056 0.84779 0.93899 0.90816 1.42634 1.60555 1.25214 1.10074 1.18981 1.24997 1.02486 0.89477 0.91992 1.25471 1.01983 0.98212 0.99637 1.69878 1.47542 1.18791 1.27157 0.85487 0.78936 0.76959 0.80869 1.21131 1.22648 1.16621 1.22406 1.03338 0.79346 0.97670 1.21951 1.03315 0.83148 0.98511 1.21946 1.02987 1.02443 0.95825 1.22156 1.06071 0.93178 1.03140 1.24819 0.98224 1.02226 0.86222 1.84069 1.59277 1.28325 1.36146 0.92954 0.89060 0.89457 0.91538 0.90109 0.91965 0.90259 0.79833 0.93407 0.88017 0.90287 0.81775 0.81167 0.75142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.16 71.98 0.66 -1.66 16 2 C -0.02 -0.51 2.73 -12.28 -0.03 -0.54 16 3 H 0.14 2.33 7.09 -2.39 -0.02 2.32 16 4 C 0.53 15.10 6.91 87.66 0.61 15.70 16 5 O -0.57 -21.07 16.11 8.30 0.13 -20.94 16 6 N -0.61 -16.19 3.33 -811.79 -2.70 -18.89 16 7 C 0.11 3.00 6.93 86.85 0.60 3.60 16 8 C -0.15 -4.44 6.77 31.99 0.22 -4.23 16 9 C 0.17 5.40 3.58 46.19 0.17 5.56 16 10 H 0.07 2.40 8.12 -2.38 -0.02 2.38 16 11 N -0.74 -30.52 5.06 -317.30 -1.60 -32.12 16 12 C -0.23 -12.00 10.46 84.03 0.88 -11.12 16 13 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 14 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 15 N -0.98 -60.75 13.97 21.65 0.30 -60.44 16 16 Si 0.95 42.66 27.74 68.60 1.90 44.56 16 17 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 18 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 19 H -0.24 -9.36 6.52 99.48 0.65 -8.71 16 20 C 0.10 2.33 5.86 86.73 0.51 2.84 16 21 C -0.02 -0.46 5.49 24.83 0.14 -0.32 16 22 C -0.21 -4.54 10.78 22.19 0.24 -4.30 16 23 C -0.23 -4.30 10.91 22.19 0.24 -4.06 16 24 C -0.05 -0.94 12.09 66.97 0.81 -0.13 16 25 O -0.18 -4.90 10.06 8.86 0.09 -4.81 16 26 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.23 7.90 -2.39 -0.02 1.21 16 29 H 0.07 1.92 7.99 -2.38 -0.02 1.90 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.37 14.40 5.38 -92.71 -0.50 13.91 16 34 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 35 H 0.10 1.96 7.90 -2.39 -0.02 1.94 16 36 H 0.08 1.83 7.44 -2.39 -0.02 1.81 16 37 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 38 H 0.17 2.26 8.06 -2.91 -0.02 2.23 16 39 H 0.23 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -72.59 327.23 4.11 -68.48 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.49 Total: 25.79 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 5.50 Total: -1.62 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.00 Total: -111.46 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.22 Total: -25.75 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.90 Total: 44.56 kcal Total: -72.59 4.11 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019373768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.794 kcal (2) G-P(sol) polarization free energy of solvation -72.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds