Wall clock time and date at job start Tue Mar 31 2020 00:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47135 * 2 1 4 4 C 1.50709 * 109.47139 * 240.00320 * 2 1 3 5 5 O 1.21280 * 119.99821 * 240.00031 * 4 2 1 6 6 N 1.34775 * 119.99687 * 59.99548 * 4 2 1 7 7 C 1.46500 * 120.00385 * 0.02562 * 6 4 2 8 8 C 1.46499 * 119.99678 * 180.02562 * 6 4 2 9 9 C 1.53499 * 114.20527 * 240.00349 * 8 6 4 10 10 N 1.47066 * 87.98642 * 220.14732 * 9 8 6 11 11 C 1.36935 * 136.05905 * 207.08539 * 10 9 8 12 12 H 1.07996 * 120.00461 * 6.76058 * 11 10 9 13 13 C 1.38816 * 119.99877 * 186.76278 * 11 10 9 14 14 N 1.31618 * 119.99884 * 172.25761 * 13 11 10 15 15 Si 1.86798 * 120.00153 * 352.25282 * 13 11 10 16 16 H 1.48497 * 109.47359 * 175.36223 * 15 13 11 17 17 H 1.48503 * 109.47030 * 295.36478 * 15 13 11 18 18 H 1.48505 * 109.46945 * 55.36328 * 15 13 11 19 19 C 1.47070 * 87.88468 * 27.34150 * 10 9 8 20 20 C 1.50697 * 109.47210 * 120.00250 * 2 1 3 21 21 C 1.34512 * 125.79075 * 239.99864 * 20 2 1 22 22 C 1.41382 * 106.84051 * 180.02562 * 21 20 2 23 23 C 1.34512 * 106.84397 * 359.97438 * 22 21 20 24 24 O 1.34303 * 108.41672 * 359.73831 * 23 22 21 25 25 H 1.09000 * 109.47252 * 299.99913 * 1 2 3 26 26 H 1.09003 * 109.47429 * 59.99990 * 1 2 3 27 27 H 1.09004 * 109.47507 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46861 * 269.99563 * 7 6 4 29 29 H 1.08999 * 109.47091 * 29.99510 * 7 6 4 30 30 H 1.08998 * 109.47582 * 149.99539 * 7 6 4 31 31 H 1.08993 * 113.28511 * 13.06848 * 8 6 4 32 32 H 1.09001 * 113.46838 * 105.36625 * 9 8 6 33 33 H 1.09000 * 113.46983 * 334.92687 * 9 8 6 34 34 H 0.97004 * 120.00412 * 4.87236 * 14 13 11 35 35 H 1.09004 * 113.46535 * 87.44030 * 19 10 9 36 36 H 1.08996 * 113.46991 * 217.87726 * 19 10 9 37 37 H 1.08001 * 126.57863 * 359.96240 * 21 20 2 38 38 H 1.08006 * 126.57742 * 180.02562 * 22 21 20 39 39 H 1.07995 * 125.79008 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7296 -1.6965 -1.1193 6 7 1.7066 -0.2499 -2.4546 7 6 0.8648 0.9415 -2.5890 8 6 2.1945 -0.9407 -3.6508 9 6 3.0645 -0.0711 -4.5690 10 7 2.3854 -0.6935 -5.7155 11 6 2.6970 -0.9547 -7.0231 12 1 3.6977 -0.7731 -7.3864 13 6 1.7266 -1.4528 -7.8816 14 7 1.9793 -1.5603 -9.1688 15 14 0.0622 -1.9706 -7.2102 16 1 -0.8267 -2.3578 -8.3349 17 1 0.2356 -3.1274 -6.2954 18 1 -0.5455 -0.8380 -6.4663 19 6 1.2220 -0.9062 -4.8413 20 6 2.0323 -0.7104 1.2304 21 6 2.8089 -0.1721 2.1877 22 6 3.0387 -1.1852 3.1466 23 6 2.3883 -2.2820 2.7183 24 8 1.7755 -1.9868 1.5603 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.1833 0.6439 -2.6222 29 1 1.0286 1.6003 -1.7361 30 1 1.1226 1.4669 -3.5086 31 1 2.6127 -1.9248 -3.4395 32 1 4.1269 -0.3082 -4.5127 33 1 2.8646 0.9961 -4.4733 34 1 2.8656 -1.3588 -9.5077 35 1 0.5364 -0.0591 -4.8173 36 1 0.7147 -1.8548 -5.0169 37 1 3.1855 0.8397 2.2175 38 1 3.6235 -1.0955 4.0502 39 1 2.3596 -3.2365 3.2226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043845753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:00 Heat of formation + Delta-G solvation = 59.053532 kcal Electronic energy + Delta-G solvation = -21898.344021 eV Core-core repulsion = 18617.860522 eV Total energy + Delta-G solvation = -3280.483499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.66294 -40.23644 -38.20865 -35.13280 -33.93692 -32.91688 -32.20215 -28.89053 -27.87674 -27.04895 -25.41945 -24.80687 -22.78530 -21.83775 -20.90989 -19.68847 -18.94336 -17.59448 -17.40729 -17.08631 -16.33337 -15.91926 -15.47264 -15.09481 -14.77149 -14.29270 -13.77604 -13.67650 -13.20288 -12.98625 -12.88957 -12.72099 -12.58379 -12.34505 -12.19046 -11.98786 -11.81401 -11.58285 -11.48813 -11.23730 -10.55578 -10.44121 -9.99130 -9.69778 -9.43098 -9.25536 -8.90038 -8.55827 -8.34465 -7.20541 -6.36783 -3.28197 1.65266 2.50240 2.63221 2.88512 3.08635 3.37192 3.42061 3.62128 4.32432 4.39823 4.55411 4.73226 4.76390 4.79916 4.95889 5.00800 5.03148 5.12750 5.33027 5.38699 5.43422 5.46853 5.61808 5.69578 5.74190 5.77659 5.81575 5.89217 6.02147 6.11765 6.19060 6.33060 6.39370 6.43284 6.91066 7.02676 7.08664 7.48117 8.19636 8.21997 8.92979 9.44574 10.29073 11.15976 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035620 B = 0.003987 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.879390 B = 7020.352373 C = 7093.624017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.029 4.029 3 H 0.124 0.876 4 C 0.515 3.485 5 O -0.528 6.528 6 N -0.599 5.599 7 C 0.069 3.931 8 C 0.100 3.900 9 C 0.112 3.888 10 N -0.621 5.621 11 C -0.305 4.305 12 H 0.085 0.915 13 C -0.023 4.023 14 N -0.931 5.931 15 Si 1.071 2.929 16 H -0.294 1.294 17 H -0.292 1.292 18 H -0.287 1.287 19 C 0.091 3.909 20 C 0.018 3.982 21 C -0.211 4.211 22 C -0.217 4.217 23 C -0.039 4.039 24 O -0.159 6.159 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.262 0.738 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.762 5.951 24.258 25.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.051 4.051 3 H 0.141 0.859 4 C 0.302 3.698 5 O -0.404 6.404 6 N -0.331 5.331 7 C -0.074 4.074 8 C -0.004 4.004 9 C -0.016 4.016 10 N -0.349 5.349 11 C -0.431 4.431 12 H 0.103 0.897 13 C -0.222 4.222 14 N -0.573 5.573 15 Si 0.903 3.097 16 H -0.221 1.221 17 H -0.221 1.221 18 H -0.214 1.214 19 C -0.035 4.035 20 C -0.033 4.033 21 C -0.230 4.230 22 C -0.236 4.236 23 C -0.107 4.107 24 O -0.054 6.054 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.142 0.858 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.164 0.836 38 H 0.164 0.836 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.987 4.610 23.388 24.354 hybrid contribution 1.777 0.802 0.614 2.044 sum -3.210 5.411 24.002 24.813 Atomic orbital electron populations 1.22087 0.91388 1.04056 1.03980 1.19900 0.98306 0.99097 0.87755 0.85862 1.20375 0.80543 0.84793 0.84103 1.90731 1.37451 1.25982 1.86195 1.47861 1.50836 1.28832 1.05620 1.22045 0.94716 0.87253 1.03379 1.23632 0.97484 0.97894 0.81362 1.22750 0.97020 0.95640 0.86181 1.45685 1.12826 1.68504 1.07871 1.20121 0.98560 1.42524 0.81935 0.89736 1.25761 1.03630 0.98974 0.93835 1.70921 1.23131 1.52219 1.11073 0.83688 0.75798 0.76254 0.73915 1.22090 1.22063 1.21384 1.23183 0.92548 0.99671 0.88100 1.21571 1.01635 0.82842 0.97277 1.21510 1.03963 1.01349 0.96160 1.21756 1.05866 0.93595 1.02431 1.24016 0.99061 1.00694 0.86936 1.84041 1.58526 1.27758 1.35102 0.91040 0.89808 0.91432 0.91859 0.91000 0.90092 0.85788 0.93271 0.94205 0.92820 0.93225 0.92771 0.83594 0.83593 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 8.81 37.16 0.33 -1.03 16 2 C -0.03 -0.32 2.33 -92.92 -0.22 -0.53 16 3 H 0.12 0.98 7.36 -51.93 -0.38 0.60 16 4 C 0.52 7.77 7.07 -10.98 -0.08 7.69 16 5 O -0.53 -10.29 15.32 -0.82 -0.01 -10.30 16 6 N -0.60 -8.73 3.11 -173.55 -0.54 -9.27 16 7 C 0.07 0.72 7.48 59.85 0.45 1.16 16 8 C 0.10 1.86 4.57 -67.67 -0.31 1.55 16 9 C 0.11 2.23 8.24 -8.50 -0.07 2.16 16 10 N -0.62 -15.34 3.70 -184.60 -0.68 -16.02 16 11 C -0.31 -8.86 11.08 -15.06 -0.17 -9.02 16 12 H 0.08 2.58 8.05 -52.49 -0.42 2.15 16 13 C -0.02 -0.69 5.50 -17.43 -0.10 -0.78 16 14 N -0.93 -29.45 13.70 55.49 0.76 -28.68 16 15 Si 1.07 26.75 25.13 -169.99 -4.27 22.47 16 16 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 17 H -0.29 -7.04 6.65 56.52 0.38 -6.66 16 18 H -0.29 -6.52 6.13 56.52 0.35 -6.18 16 19 C 0.09 1.91 5.13 -8.37 -0.04 1.87 16 20 C 0.02 0.23 5.19 -35.63 -0.19 0.04 16 21 C -0.21 -2.35 10.78 -39.70 -0.43 -2.78 16 22 C -0.22 -2.26 10.91 -39.70 -0.43 -2.70 16 23 C -0.04 -0.42 12.09 29.42 0.36 -0.07 16 24 O -0.16 -2.21 10.36 -0.67 -0.01 -2.22 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.60 4.53 -51.93 -0.24 0.37 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.58 6.95 -51.93 -0.36 0.22 16 29 H 0.07 0.51 6.01 -51.93 -0.31 0.20 16 30 H 0.08 0.91 6.17 -51.93 -0.32 0.59 16 31 H 0.12 2.54 7.29 -51.93 -0.38 2.16 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.73 6.96 -51.93 -0.36 0.37 16 34 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 35 H 0.05 0.96 6.16 -51.93 -0.32 0.64 16 36 H 0.05 1.20 4.65 -51.93 -0.24 0.96 16 37 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.20 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -36.08 311.86 -6.05 -42.13 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.10 Total: -0.37 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.89 Total: -2.44 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.46 Total: -53.97 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.02 Total: -12.52 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -4.27 Total: 22.47 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -36.08 -6.05 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043845753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.184 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds