Wall clock time and date at job start Tue Mar 31 2020 00:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.70055 * 2 1 4 4 C 1.53191 * 109.58888 * 120.35846 * 2 1 3 5 5 C 1.53039 * 109.31303 * 65.15162 * 4 2 1 6 6 H 1.09001 * 109.46172 * 301.34495 * 5 4 2 7 7 N 1.46501 * 109.45127 * 181.37858 * 5 4 2 8 8 C 1.36928 * 120.00005 * 154.93773 * 7 5 4 9 9 H 1.07999 * 120.00605 * 0.02562 * 8 7 5 10 10 C 1.38811 * 120.00071 * 179.97438 * 8 7 5 11 11 N 1.31627 * 119.99784 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00471 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46972 * 90.00003 * 12 10 8 14 14 H 1.48498 * 109.47576 * 210.00271 * 12 10 8 15 15 H 1.48507 * 109.46829 * 330.00208 * 12 10 8 16 16 C 1.53045 * 109.53854 * 61.36288 * 5 4 2 17 17 C 1.53192 * 109.31428 * 298.63616 * 16 5 4 18 18 N 1.46927 * 108.77405 * 54.63526 * 17 16 5 19 19 C 1.34779 * 120.63268 * 126.11859 * 18 17 16 20 20 O 1.21694 * 119.99591 * 352.67525 * 19 18 17 21 21 C 1.46652 * 120.00062 * 172.67420 * 19 18 17 22 22 C 1.36540 * 125.98836 * 172.42882 * 21 19 18 23 23 C 1.40363 * 106.71277 * 179.85243 * 22 21 19 24 24 C 1.35130 * 107.11315 * 0.41230 * 23 22 21 25 25 O 1.33936 * 108.76682 * 359.74550 * 24 23 22 26 26 H 1.09000 * 109.47128 * 180.35668 * 1 2 3 27 27 H 1.09006 * 109.46875 * 300.35251 * 1 2 3 28 28 H 1.08997 * 109.47734 * 60.35157 * 1 2 3 29 29 H 1.08996 * 109.49649 * 305.20070 * 4 2 1 30 30 H 1.08998 * 109.52362 * 185.11914 * 4 2 1 31 31 H 0.96998 * 119.99881 * 334.93943 * 7 5 4 32 32 H 0.97003 * 119.99771 * 179.97438 * 11 10 8 33 33 H 1.08994 * 109.49751 * 178.68459 * 16 5 4 34 34 H 1.09001 * 109.51865 * 58.60365 * 16 5 4 35 35 H 1.09003 * 109.58722 * 294.85055 * 17 16 5 36 36 H 1.08996 * 109.70643 * 174.48682 * 17 16 5 37 37 H 1.08002 * 126.64657 * 359.96835 * 22 21 19 38 38 H 1.08001 * 126.44989 * 180.15181 * 23 22 21 39 39 H 1.07997 * 125.62319 * 179.70820 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0263 0.0000 4 6 2.0436 -0.7294 1.2453 5 6 1.6415 -2.2041 1.1700 6 1 0.5566 -2.2816 1.0992 7 7 2.1027 -2.8977 2.3752 8 6 1.4648 -4.0331 2.7982 9 1 0.6219 -4.4176 2.2431 10 6 1.9021 -4.6906 3.9398 11 7 2.9296 -4.2223 4.6160 12 14 1.0314 -6.2391 4.5173 13 1 1.6663 -7.4266 3.8911 14 1 1.1352 -6.3437 5.9949 15 1 -0.3995 -6.1781 4.1247 16 6 2.2800 -2.8464 -0.0637 17 6 1.7691 -2.1409 -1.3239 18 7 2.0225 -0.6995 -1.1946 19 6 2.6987 -0.0326 -2.1509 20 8 3.2205 -0.6431 -3.0652 21 6 2.8057 1.4287 -2.0896 22 6 3.5749 2.2117 -2.9018 23 6 3.3708 3.5392 -2.4940 24 6 2.5041 3.5080 -1.4577 25 8 2.1659 2.2346 -1.2170 26 1 -0.3633 -1.0276 0.0064 27 1 -0.3633 0.5193 0.8869 28 1 -0.3634 0.5083 -0.8931 29 1 1.6076 -0.2785 2.1367 30 1 3.1297 -0.6504 1.2918 31 1 2.8599 -2.5526 2.8736 32 1 3.2350 -4.6816 5.4140 33 1 2.0123 -3.9022 -0.1039 34 1 3.3640 -2.7479 -0.0058 35 1 0.6985 -2.3155 -1.4318 36 1 2.2923 -2.5268 -2.1988 37 1 4.2148 1.8750 -3.7041 38 1 3.8247 4.4196 -2.9244 39 1 2.1439 4.3681 -0.9129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044420430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:20 Heat of formation + Delta-G solvation = -19.395915 kcal Electronic energy + Delta-G solvation = -22133.863331 eV Core-core repulsion = 18849.978008 eV Total energy + Delta-G solvation = -3283.885323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.70635 -41.20657 -39.05108 -36.37973 -34.17785 -33.78993 -33.21158 -31.66483 -30.38755 -28.62297 -26.09553 -25.15798 -23.67989 -23.13193 -22.63023 -21.62012 -20.31527 -19.31079 -18.27216 -17.76303 -17.37524 -16.90348 -16.72530 -15.94753 -15.63481 -15.46869 -15.26155 -14.86789 -14.51585 -14.30830 -14.14897 -13.94061 -13.74327 -13.54616 -13.14734 -12.92801 -12.85817 -12.67005 -12.41665 -12.15191 -12.08197 -11.96319 -11.68852 -11.47584 -11.12434 -10.90542 -10.88697 -9.93628 -9.53439 -9.01470 -7.93242 -5.22006 0.04208 1.45732 1.48294 1.49593 1.57762 1.58425 2.00063 2.14334 2.57051 3.39623 3.42442 3.72486 3.81539 3.97802 4.05774 4.08475 4.14970 4.23462 4.33954 4.50805 4.50888 4.63310 4.68675 4.77051 4.83856 4.92675 4.95666 5.03617 5.04763 5.12608 5.19117 5.33100 5.42924 5.50121 5.53463 5.60434 5.90106 6.28309 6.29193 6.89549 7.34708 8.09872 8.33218 9.30376 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033955 B = 0.004024 C = 0.003879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.426592 B = 6956.465111 C = 7215.716272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.123 0.877 4 C -0.125 4.125 5 C 0.175 3.825 6 H 0.058 0.942 7 N -0.737 5.737 8 C -0.236 4.236 9 H 0.078 0.922 10 C -0.076 4.076 11 N -0.971 5.971 12 Si 0.970 3.030 13 H -0.291 1.291 14 H -0.297 1.297 15 H -0.267 1.267 16 C -0.140 4.140 17 C 0.120 3.880 18 N -0.593 5.593 19 C 0.594 3.406 20 O -0.567 6.567 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.232 4.232 24 C 0.005 3.995 25 O -0.163 6.163 26 H 0.057 0.943 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.371 0.629 32 H 0.250 0.750 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.156 0.844 38 H 0.184 0.816 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 18.409 -13.110 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.030 3.970 3 H 0.140 0.860 4 C -0.164 4.164 5 C 0.067 3.933 6 H 0.076 0.924 7 N -0.376 5.376 8 C -0.368 4.368 9 H 0.096 0.904 10 C -0.268 4.268 11 N -0.622 5.622 12 Si 0.799 3.201 13 H -0.218 1.218 14 H -0.224 1.224 15 H -0.191 1.191 16 C -0.181 4.181 17 C -0.002 4.002 18 N -0.323 5.323 19 C 0.384 3.616 20 O -0.449 6.449 21 C -0.158 4.158 22 C -0.145 4.145 23 C -0.251 4.251 24 C -0.064 4.064 25 O -0.059 6.059 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.174 0.826 38 H 0.201 0.799 39 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -4.308 17.797 -13.324 22.645 hybrid contribution 0.517 -1.088 0.616 1.353 sum -3.791 16.709 -12.708 21.332 Atomic orbital electron populations 1.22101 0.92934 1.02852 1.03351 1.21828 0.96067 0.96903 0.82207 0.86037 1.22109 1.00569 0.95659 0.98027 1.20431 0.97012 0.90460 0.85405 0.92420 1.42649 1.37470 1.29277 1.28190 1.19629 1.09785 1.01459 1.05954 0.90394 1.25530 0.99636 1.02705 0.98916 1.69825 1.29492 1.42836 1.20062 0.85186 0.78550 0.79661 0.76661 1.21812 1.22387 1.19141 1.22473 0.99856 1.00110 0.95621 1.21629 1.01628 0.78624 0.98328 1.48230 1.53870 1.09708 1.20508 1.17032 0.78067 0.84519 0.81939 1.90814 1.49181 1.68018 1.36921 1.21713 1.05168 0.90667 0.98300 1.22236 0.98901 0.93648 0.99748 1.22188 1.04249 0.97653 1.00966 1.25514 0.97349 0.85129 0.98424 1.84215 1.56590 1.17726 1.47353 0.92435 0.89633 0.91545 0.89851 0.93233 0.79798 0.94153 0.91820 0.94310 0.89381 0.89988 0.82588 0.79899 0.72972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.03 71.98 0.65 -2.70 16 2 C 0.13 3.40 2.88 44.97 0.13 3.53 16 3 H 0.12 2.84 4.24 -19.97 -0.08 2.76 16 4 C -0.12 -3.97 5.02 30.67 0.15 -3.82 16 5 C 0.18 6.70 2.52 45.02 0.11 6.81 16 6 H 0.06 2.16 6.43 -2.39 -0.02 2.15 16 7 N -0.74 -36.70 5.12 -322.81 -1.65 -38.35 16 8 C -0.24 -12.91 9.93 84.03 0.83 -12.07 16 9 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 10 C -0.08 -4.32 5.50 84.86 0.47 -3.86 16 11 N -0.97 -59.47 13.06 21.65 0.28 -59.19 16 12 Si 0.97 45.89 29.55 68.60 2.03 47.92 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 14 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 C -0.14 -5.11 5.66 30.67 0.17 -4.94 16 17 C 0.12 3.67 6.03 86.36 0.52 4.19 16 18 N -0.59 -17.42 2.68 -799.70 -2.14 -19.57 16 19 C 0.59 18.66 7.64 86.44 0.66 19.32 16 20 O -0.57 -21.17 16.30 -4.33 -0.07 -21.24 16 21 C -0.11 -2.72 6.77 24.07 0.16 -2.56 16 22 C -0.12 -2.69 10.63 22.39 0.24 -2.45 16 23 C -0.23 -3.26 10.87 22.07 0.24 -3.02 16 24 C 0.00 0.06 12.08 67.10 0.81 0.87 16 25 O -0.16 -3.21 7.25 -5.12 -0.04 -3.24 16 26 H 0.06 1.36 5.72 -2.39 -0.01 1.35 16 27 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.37 20.09 7.80 -92.71 -0.72 19.37 16 32 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 33 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.09 2.34 7.50 -2.39 -0.02 2.32 16 36 H 0.08 2.62 7.00 -2.39 -0.02 2.60 16 37 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 38 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.25 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -70.85 317.70 3.83 -67.02 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.27 Total: 27.33 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 5.15 Total: -0.68 kcal Atomic # 7 Polarization: -113.60 SS G_CDS: -3.51 Total: -117.11 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.11 Total: -24.48 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -70.85 3.83 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044420430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.626 kcal (2) G-P(sol) polarization free energy of solvation -70.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds