Wall clock time and date at job start Tue Mar 31 2020 00:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.57978 * 2 1 4 4 C 1.53188 * 109.58752 * 120.27897 * 2 1 3 5 5 C 1.53034 * 109.31155 * 174.56546 * 4 2 1 6 6 C 1.53041 * 109.54075 * 298.63528 * 5 4 2 7 7 H 1.08998 * 109.49724 * 181.31894 * 6 5 4 8 8 N 1.46502 * 109.49814 * 301.41630 * 6 5 4 9 9 C 1.34778 * 119.99672 * 204.99814 * 8 6 5 10 10 O 1.21612 * 120.00191 * 359.97438 * 9 8 6 11 11 C 1.47376 * 119.99616 * 180.02562 * 9 8 6 12 12 C 1.47027 * 127.19348 * 179.97438 * 11 9 8 13 13 C 1.34168 * 105.95496 * 179.97438 * 12 11 9 14 14 O 1.34217 * 109.12900 * 0.02562 * 13 12 11 15 15 C 1.33655 * 110.90612 * 359.76116 * 14 13 12 16 16 C 1.53185 * 109.31022 * 61.36607 * 6 5 4 17 17 N 1.46927 * 109.58725 * 239.71926 * 2 1 3 18 18 C 1.36939 * 120.63151 * 6.45878 * 17 2 1 19 19 H 1.07996 * 119.99791 * 331.08811 * 18 17 2 20 20 C 1.38811 * 120.00019 * 151.08320 * 18 17 2 21 21 N 1.31611 * 120.00137 * 160.80976 * 20 18 17 22 22 Si 1.86806 * 119.99802 * 340.80966 * 20 18 17 23 23 H 1.48500 * 109.47035 * 92.34745 * 22 20 18 24 24 H 1.48496 * 109.46873 * 212.34993 * 22 20 18 25 25 H 1.48507 * 109.47127 * 332.35232 * 22 20 18 26 26 H 1.08996 * 109.47006 * 300.00152 * 1 2 3 27 27 H 1.08998 * 109.46738 * 59.99998 * 1 2 3 28 28 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.50007 * 294.51938 * 4 2 1 30 30 H 1.09003 * 109.49609 * 54.61418 * 4 2 1 31 31 H 1.08999 * 109.46019 * 58.66208 * 5 4 2 32 32 H 1.09001 * 109.45944 * 178.61823 * 5 4 2 33 33 H 0.97002 * 120.00009 * 24.99517 * 8 6 5 34 34 H 1.07999 * 127.01626 * 359.97438 * 12 11 9 35 35 H 1.08006 * 125.43904 * 180.02562 * 13 12 11 36 36 H 1.07992 * 125.80344 * 180.26557 * 15 14 13 37 37 H 1.09001 * 109.58962 * 65.15353 * 16 6 5 38 38 H 1.09005 * 109.59137 * 185.43311 * 16 6 5 39 39 H 0.97003 * 119.99830 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5678 -0.8432 1.1729 6 6 3.9604 -1.6607 -0.0599 7 1 5.0450 -1.7624 -0.0987 8 7 3.3466 -2.9887 0.0183 9 6 3.9061 -4.0289 -0.6310 10 8 4.9202 -3.8650 -1.2820 11 6 3.2884 -5.3646 -0.5528 12 6 3.7603 -6.6010 -1.1934 13 6 2.8860 -7.5558 -0.8412 14 8 1.9395 -7.0176 -0.0565 15 6 2.1618 -5.7133 0.1329 16 6 3.4686 -0.9436 -1.3210 17 7 2.0226 -0.6980 -1.1954 18 6 1.1535 -1.1129 -2.1688 19 1 0.1361 -1.3680 -1.9113 20 6 1.5800 -1.2055 -3.4866 21 7 0.9062 -1.9397 -4.3463 22 14 3.1103 -0.2880 -4.0396 23 1 4.2941 -1.1748 -3.9071 24 1 2.9557 0.1226 -5.4582 25 1 3.2978 0.9175 -3.1928 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7639 -0.1653 2.1371 30 1 1.6050 -1.7245 1.2922 31 1 4.0045 0.1530 1.1022 32 1 3.9381 -1.3389 2.0703 33 1 2.5376 -3.1193 0.5373 34 1 4.6327 -6.7168 -1.8195 35 1 2.9358 -8.5921 -1.1413 36 1 1.5523 -5.0482 0.7265 37 1 3.9920 0.0064 -1.4288 38 1 3.6600 -1.5672 -2.1942 39 1 1.2041 -2.0041 -5.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071347074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:35 Heat of formation + Delta-G solvation = 5.359362 kcal Electronic energy + Delta-G solvation = -22795.524872 eV Core-core repulsion = 19512.713019 eV Total energy + Delta-G solvation = -3282.811853 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.34483 -39.48700 -37.64088 -34.22977 -32.79816 -32.63684 -30.98668 -30.68264 -29.34232 -26.44144 -24.91572 -23.53105 -22.63918 -21.31079 -20.61564 -20.02208 -18.88887 -18.27251 -16.49556 -16.06241 -15.95445 -15.48432 -15.10156 -14.72975 -14.40424 -14.18841 -13.60375 -13.49919 -13.16428 -13.03242 -12.75594 -12.54471 -12.20768 -12.02789 -11.78808 -11.50437 -11.28229 -10.97688 -10.53020 -10.42833 -10.29803 -9.95479 -9.71715 -9.60935 -9.50642 -9.34784 -8.73449 -8.63760 -8.37046 -6.87940 -5.89447 -3.26753 1.59371 2.26442 3.05656 3.44703 3.54086 3.55752 3.58597 3.86971 4.60619 4.74035 4.88024 4.90975 5.15437 5.24785 5.29395 5.32270 5.49536 5.68153 5.76496 5.81313 5.92733 5.98378 6.06911 6.11675 6.22570 6.24236 6.30093 6.39506 6.43534 6.46843 6.49624 6.74477 6.94191 7.01463 7.05169 7.08572 7.98572 8.03300 8.38886 8.72493 8.97770 9.78451 10.15400 11.25964 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.007504 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.994129 B = 3730.233735 C = 4293.781126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.168 3.832 3 H 0.030 0.970 4 C -0.132 4.132 5 C -0.119 4.119 6 C 0.130 3.870 7 H 0.081 0.919 8 N -0.698 5.698 9 C 0.587 3.413 10 O -0.546 6.546 11 C -0.222 4.222 12 C -0.164 4.164 13 C -0.048 4.048 14 O -0.178 6.178 15 C 0.020 3.980 16 C 0.113 3.887 17 N -0.598 5.598 18 C -0.258 4.258 19 H 0.090 0.910 20 C 0.028 3.972 21 N -0.908 5.908 22 Si 0.875 3.125 23 H -0.285 1.285 24 H -0.305 1.305 25 H -0.271 1.271 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.395 0.605 34 H 0.157 0.843 35 H 0.206 0.794 36 H 0.209 0.791 37 H 0.032 0.968 38 H 0.081 0.919 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.578 -5.151 13.152 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.062 3.938 3 H 0.047 0.953 4 C -0.171 4.171 5 C -0.157 4.157 6 C 0.023 3.977 7 H 0.099 0.901 8 N -0.348 5.348 9 C 0.375 3.625 10 O -0.425 6.425 11 C -0.227 4.227 12 C -0.184 4.184 13 C -0.114 4.114 14 O -0.073 6.073 15 C -0.051 4.051 16 C -0.014 4.014 17 N -0.322 5.322 18 C -0.386 4.386 19 H 0.108 0.892 20 C -0.171 4.171 21 N -0.551 5.551 22 Si 0.705 3.295 23 H -0.212 1.212 24 H -0.233 1.233 25 H -0.196 1.196 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.230 0.770 34 H 0.174 0.826 35 H 0.223 0.777 36 H 0.225 0.775 37 H 0.050 0.950 38 H 0.099 0.901 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.027 -5.222 12.620 13.989 hybrid contribution 0.637 0.538 -0.498 0.971 sum 3.664 -4.683 12.123 13.503 Atomic orbital electron populations 1.21802 0.95340 1.01766 1.00418 1.20480 0.93538 0.93474 0.86284 0.95282 1.22067 0.94935 1.00982 0.99109 1.21701 0.97203 1.00135 0.96686 1.21463 0.97236 0.81918 0.97036 0.90101 1.45639 1.29363 1.08150 1.51661 1.17185 0.83577 0.82865 0.78899 1.90746 1.25405 1.85051 1.41307 1.21600 0.99602 0.95505 1.05956 1.22768 1.02025 0.90542 1.03021 1.23845 0.89776 0.99603 0.98135 1.83758 1.45789 1.22408 1.55340 1.24381 0.97297 0.82649 1.00731 1.21827 0.85717 0.97127 0.96706 1.44433 1.01618 1.65587 1.20567 1.18824 0.95494 1.38663 0.85658 0.89249 1.25273 0.97308 0.98581 0.95907 1.69803 1.41228 1.39403 1.04634 0.87047 0.84134 0.81372 0.76902 1.21190 1.23324 1.19645 0.94202 0.91763 0.92556 0.92304 0.92375 0.90899 0.92342 0.76969 0.82570 0.77743 0.77464 0.95020 0.90131 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 7.95 37.16 0.30 -2.04 16 2 C 0.17 3.06 3.49 -67.60 -0.24 2.82 16 3 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.13 -1.88 5.21 -26.62 -0.14 -2.02 16 5 C -0.12 -1.68 5.59 -26.69 -0.15 -1.83 16 6 C 0.13 2.33 2.81 -67.81 -0.19 2.14 16 7 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 8 N -0.70 -12.23 4.91 -54.78 -0.27 -12.49 16 9 C 0.59 11.62 7.78 -12.54 -0.10 11.52 16 10 O -0.55 -12.81 16.65 5.27 0.09 -12.72 16 11 C -0.22 -3.76 6.31 -103.27 -0.65 -4.41 16 12 C -0.16 -2.48 11.01 -37.45 -0.41 -2.90 16 13 C -0.05 -0.58 12.03 29.30 0.35 -0.23 16 14 O -0.18 -2.36 10.52 7.64 0.08 -2.28 16 15 C 0.02 0.27 11.61 30.08 0.35 0.62 16 16 C 0.11 2.51 3.81 -3.56 -0.01 2.50 16 17 N -0.60 -13.48 2.68 -164.55 -0.44 -13.92 16 18 C -0.26 -6.94 9.05 -15.06 -0.14 -7.07 16 19 H 0.09 2.52 6.38 -52.49 -0.34 2.18 16 20 C 0.03 0.83 5.25 -17.43 -0.09 0.74 16 21 N -0.91 -28.17 13.97 55.49 0.78 -27.40 16 22 Si 0.87 23.34 24.35 -169.99 -4.14 19.20 16 23 H -0.28 -7.76 6.62 56.52 0.37 -7.39 16 24 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 25 H -0.27 -6.99 6.62 56.52 0.37 -6.62 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 1.24 7.64 -51.93 -0.40 0.84 16 28 H 0.06 1.00 7.42 -51.93 -0.39 0.62 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.81 6.40 -51.93 -0.33 0.48 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.40 5.96 5.74 -40.82 -0.23 5.73 16 34 H 0.16 2.26 8.06 -52.49 -0.42 1.84 16 35 H 0.21 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.21 2.12 7.47 -52.49 -0.39 1.73 16 37 H 0.03 0.70 7.04 -51.93 -0.37 0.34 16 38 H 0.08 2.12 4.62 -51.93 -0.24 1.88 16 39 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 310.76 15.07 4.68 4.68 Total: -1.00 -34.66 310.76 -5.57 -40.23 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -5.22 Total: 4.86 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.12 Total: -0.17 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.07 Total: -53.81 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.17 Total: -15.00 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.14 Total: 19.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.66 -5.57 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071347074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.589 kcal (2) G-P(sol) polarization free energy of solvation -34.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds