Wall clock time and date at job start Tue Mar 31 2020 00:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.57978 * 2 1 4 4 C 1.53188 * 109.58752 * 120.27897 * 2 1 3 5 5 C 1.53034 * 109.31155 * 174.56546 * 4 2 1 6 6 C 1.53041 * 109.54075 * 298.63528 * 5 4 2 7 7 H 1.08998 * 109.49724 * 181.31894 * 6 5 4 8 8 N 1.46502 * 109.49814 * 301.41630 * 6 5 4 9 9 C 1.34778 * 119.99672 * 204.99814 * 8 6 5 10 10 O 1.21612 * 120.00191 * 359.97438 * 9 8 6 11 11 C 1.47376 * 119.99616 * 180.02562 * 9 8 6 12 12 C 1.47027 * 127.19348 * 179.97438 * 11 9 8 13 13 C 1.34168 * 105.95496 * 179.97438 * 12 11 9 14 14 O 1.34217 * 109.12900 * 0.02562 * 13 12 11 15 15 C 1.33655 * 110.90612 * 359.76116 * 14 13 12 16 16 C 1.53185 * 109.31022 * 61.36607 * 6 5 4 17 17 N 1.46927 * 109.58725 * 239.71926 * 2 1 3 18 18 C 1.36939 * 120.63151 * 6.45878 * 17 2 1 19 19 H 1.07996 * 119.99791 * 331.08811 * 18 17 2 20 20 C 1.38811 * 120.00019 * 151.08320 * 18 17 2 21 21 N 1.31611 * 120.00137 * 160.80976 * 20 18 17 22 22 Si 1.86806 * 119.99802 * 340.80966 * 20 18 17 23 23 H 1.48500 * 109.47035 * 92.34745 * 22 20 18 24 24 H 1.48496 * 109.46873 * 212.34993 * 22 20 18 25 25 H 1.48507 * 109.47127 * 332.35232 * 22 20 18 26 26 H 1.08996 * 109.47006 * 300.00152 * 1 2 3 27 27 H 1.08998 * 109.46738 * 59.99998 * 1 2 3 28 28 H 1.08999 * 109.46893 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.50007 * 294.51938 * 4 2 1 30 30 H 1.09003 * 109.49609 * 54.61418 * 4 2 1 31 31 H 1.08999 * 109.46019 * 58.66208 * 5 4 2 32 32 H 1.09001 * 109.45944 * 178.61823 * 5 4 2 33 33 H 0.97002 * 120.00009 * 24.99517 * 8 6 5 34 34 H 1.07999 * 127.01626 * 359.97438 * 12 11 9 35 35 H 1.08006 * 125.43904 * 180.02562 * 13 12 11 36 36 H 1.07992 * 125.80344 * 180.26557 * 15 14 13 37 37 H 1.09001 * 109.58962 * 65.15353 * 16 6 5 38 38 H 1.09005 * 109.59137 * 185.43311 * 16 6 5 39 39 H 0.97003 * 119.99830 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7277 1.2463 5 6 3.5678 -0.8432 1.1729 6 6 3.9604 -1.6607 -0.0599 7 1 5.0450 -1.7624 -0.0987 8 7 3.3466 -2.9887 0.0183 9 6 3.9061 -4.0289 -0.6310 10 8 4.9202 -3.8650 -1.2820 11 6 3.2884 -5.3646 -0.5528 12 6 3.7603 -6.6010 -1.1934 13 6 2.8860 -7.5558 -0.8412 14 8 1.9395 -7.0176 -0.0565 15 6 2.1618 -5.7133 0.1329 16 6 3.4686 -0.9436 -1.3210 17 7 2.0226 -0.6980 -1.1954 18 6 1.1535 -1.1129 -2.1688 19 1 0.1361 -1.3680 -1.9113 20 6 1.5800 -1.2055 -3.4866 21 7 0.9062 -1.9397 -4.3463 22 14 3.1103 -0.2880 -4.0396 23 1 4.2941 -1.1748 -3.9071 24 1 2.9557 0.1226 -5.4582 25 1 3.2978 0.9175 -3.1928 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7639 -0.1653 2.1371 30 1 1.6050 -1.7245 1.2922 31 1 4.0045 0.1530 1.1022 32 1 3.9381 -1.3389 2.0703 33 1 2.5376 -3.1193 0.5373 34 1 4.6327 -6.7168 -1.8195 35 1 2.9358 -8.5921 -1.1413 36 1 1.5523 -5.0482 0.7265 37 1 3.9920 0.0064 -1.4288 38 1 3.6600 -1.5672 -2.1942 39 1 1.2041 -2.0041 -5.2672 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071347074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:35 Heat of formation + Delta-G solvation = -20.448889 kcal Electronic energy + Delta-G solvation = -22796.644002 eV Core-core repulsion = 19512.713019 eV Total energy + Delta-G solvation = -3283.930983 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.43662 -40.98464 -39.20669 -35.87556 -34.52733 -33.89966 -32.55705 -32.33055 -30.49179 -27.99667 -26.66600 -24.94081 -24.21301 -22.40728 -22.06436 -21.36635 -20.49086 -19.44145 -18.39209 -17.54009 -17.09078 -17.06548 -16.68246 -16.19706 -15.93717 -15.61558 -15.25431 -15.04220 -14.61912 -14.40864 -14.27672 -13.88664 -13.84962 -13.44943 -13.29010 -13.23422 -12.62898 -12.53081 -12.38177 -12.13737 -11.81059 -11.65353 -11.39147 -11.13997 -11.08095 -10.82965 -10.71490 -10.06943 -9.70254 -8.80469 -8.14820 -5.42985 0.40780 1.15067 1.27409 1.31177 1.37936 2.01981 2.22774 2.41500 2.46554 3.06494 3.32949 3.67880 3.78741 3.89121 4.01174 4.12925 4.17894 4.31145 4.51284 4.55320 4.60896 4.67631 4.75722 4.81505 4.87566 4.98007 5.04104 5.05653 5.12159 5.21289 5.28877 5.33382 5.55003 5.57557 5.64985 5.93636 5.99756 6.20710 6.61705 6.95979 7.28118 7.68374 8.09866 9.04462 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.007504 C = 0.006519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.994129 B = 3730.233735 C = 4293.781126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.156 3.844 3 H 0.036 0.964 4 C -0.122 4.122 5 C -0.109 4.109 6 C 0.132 3.868 7 H 0.074 0.926 8 N -0.687 5.687 9 C 0.579 3.421 10 O -0.598 6.598 11 C -0.269 4.269 12 C -0.205 4.205 13 C -0.020 4.020 14 O -0.174 6.174 15 C 0.043 3.957 16 C 0.110 3.890 17 N -0.607 5.607 18 C -0.216 4.216 19 H 0.076 0.924 20 C -0.033 4.033 21 N -0.955 5.955 22 Si 0.923 3.077 23 H -0.304 1.304 24 H -0.316 1.316 25 H -0.256 1.256 26 H 0.081 0.919 27 H 0.033 0.967 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.408 0.592 34 H 0.149 0.851 35 H 0.253 0.747 36 H 0.243 0.757 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 -5.118 16.932 17.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.052 3.948 3 H 0.054 0.946 4 C -0.161 4.161 5 C -0.147 4.147 6 C 0.026 3.974 7 H 0.092 0.908 8 N -0.338 5.338 9 C 0.368 3.632 10 O -0.481 6.481 11 C -0.274 4.274 12 C -0.224 4.224 13 C -0.085 4.085 14 O -0.069 6.069 15 C -0.027 4.027 16 C -0.017 4.017 17 N -0.332 5.332 18 C -0.346 4.346 19 H 0.094 0.906 20 C -0.227 4.227 21 N -0.603 5.603 22 Si 0.756 3.244 23 H -0.233 1.233 24 H -0.245 1.245 25 H -0.180 1.180 26 H 0.100 0.900 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.110 0.890 33 H 0.246 0.754 34 H 0.167 0.833 35 H 0.268 0.732 36 H 0.259 0.741 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.223 -5.148 16.486 17.414 hybrid contribution 0.840 0.509 -1.564 1.847 sum 3.063 -4.639 14.922 15.924 Atomic orbital electron populations 1.21748 0.94661 1.01329 1.01034 1.20868 0.94227 0.93871 0.85839 0.94622 1.21989 0.94633 1.01331 0.98127 1.21702 0.97319 1.00218 0.95482 1.21398 0.96888 0.82193 0.96934 0.90772 1.45576 1.29575 1.07581 1.51025 1.17725 0.83082 0.84317 0.78079 1.90703 1.27773 1.86008 1.43620 1.21640 1.01847 0.94851 1.09057 1.22947 1.03474 0.91212 1.04808 1.24606 0.87619 1.00683 0.95592 1.83813 1.45788 1.22122 1.55155 1.24903 0.95805 0.83021 0.98985 1.21744 0.85736 0.96824 0.97347 1.44590 1.01208 1.66304 1.21085 1.18868 0.95205 1.34614 0.85958 0.90642 1.25768 0.99473 1.00653 0.96830 1.69903 1.43316 1.42409 1.04667 0.86255 0.81420 0.80646 0.76105 1.23324 1.24492 1.18015 0.90011 0.94773 0.93488 0.88245 0.91816 0.89714 0.88980 0.75393 0.83298 0.73162 0.74110 0.94905 0.94805 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.95 71.98 0.57 -3.52 16 2 C 0.16 5.15 3.49 44.98 0.16 5.30 16 3 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.12 -2.84 5.21 30.67 0.16 -2.68 16 5 C -0.11 -2.59 5.59 30.62 0.17 -2.42 16 6 C 0.13 4.55 2.81 45.07 0.13 4.68 16 7 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 8 N -0.69 -23.27 4.91 -445.48 -2.19 -25.46 16 9 C 0.58 23.29 7.78 86.65 0.67 23.97 16 10 O -0.60 -29.49 16.65 -4.07 -0.07 -29.56 16 11 C -0.27 -9.08 6.31 -18.99 -0.12 -9.20 16 12 C -0.20 -6.22 11.01 23.65 0.26 -5.96 16 13 C -0.02 -0.43 12.03 66.89 0.80 0.37 16 14 O -0.17 -4.11 10.52 4.42 0.05 -4.06 16 15 C 0.04 1.09 11.61 67.40 0.78 1.87 16 16 C 0.11 4.86 3.81 86.31 0.33 5.19 16 17 N -0.61 -26.70 2.68 -674.52 -1.81 -28.50 16 18 C -0.22 -11.72 9.05 84.03 0.76 -10.95 16 19 H 0.08 4.28 6.38 -2.91 -0.02 4.27 16 20 C -0.03 -1.99 5.25 84.86 0.45 -1.54 16 21 N -0.96 -61.73 13.97 21.65 0.30 -61.43 16 22 Si 0.92 50.43 24.35 68.60 1.67 52.10 16 23 H -0.30 -17.41 6.62 99.48 0.66 -16.75 16 24 H -0.32 -17.52 7.11 99.48 0.71 -16.81 16 25 H -0.26 -13.03 6.62 99.48 0.66 -12.37 16 26 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.03 1.25 7.64 -2.39 -0.02 1.24 16 28 H 0.05 1.55 7.42 -2.39 -0.02 1.53 16 29 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.44 6.40 -2.39 -0.02 1.43 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 33 H 0.41 11.24 5.74 -92.71 -0.53 10.70 16 34 H 0.15 4.56 8.06 -2.91 -0.02 4.54 16 35 H 0.25 2.86 8.06 -2.91 -0.02 2.84 16 36 H 0.24 4.04 7.47 -2.91 -0.02 4.02 16 37 H 0.03 1.44 7.04 -2.39 -0.02 1.42 16 38 H 0.03 1.83 4.62 -2.38 -0.01 1.82 16 39 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -81.32 310.76 3.52 -77.80 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.44 Total: 14.00 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.12 Total: 5.11 kcal Atomic # 7 Polarization: -111.70 SS G_CDS: -3.69 Total: -115.39 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.02 Total: -33.62 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 1.67 Total: 52.10 kcal Total: -81.32 3.52 -77.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071347074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.355 kcal (2) G-P(sol) polarization free energy of solvation -81.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds