Wall clock time and date at job start Tue Mar 31 2020 00:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.78156 * 2 1 4 4 C 1.54320 * 110.71886 * 236.76519 * 2 1 3 5 5 N 1.47026 * 107.27331 * 219.44137 * 4 2 1 6 6 C 1.36937 * 125.65096 * 178.98446 * 5 4 2 7 7 H 1.08000 * 119.99515 * 349.94286 * 6 5 4 8 8 C 1.38804 * 120.00011 * 169.94538 * 6 5 4 9 9 N 1.31618 * 120.00268 * 350.42088 * 8 6 5 10 10 Si 1.86803 * 119.99966 * 170.41760 * 8 6 5 11 11 H 1.48503 * 109.46872 * 94.14117 * 10 8 6 12 12 H 1.48500 * 109.47114 * 214.13733 * 10 8 6 13 13 H 1.48491 * 109.47302 * 334.14301 * 10 8 6 14 14 C 1.47424 * 108.70189 * 358.94024 * 5 4 2 15 15 C 1.54917 * 104.83192 * 24.12787 * 14 5 4 16 16 H 1.09001 * 111.03663 * 81.08110 * 15 14 5 17 17 N 1.46495 * 111.00203 * 204.91717 * 15 14 5 18 18 C 1.34779 * 119.99924 * 267.19422 * 17 15 14 19 19 O 1.21283 * 120.00045 * 0.02562 * 18 17 15 20 20 C 1.50709 * 119.99958 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.46764 * 179.97438 * 20 18 17 22 22 C 1.34517 * 125.78537 * 89.71871 * 21 20 18 23 23 C 1.41381 * 106.83838 * 180.25783 * 22 21 20 24 24 C 1.34518 * 106.84335 * 0.02562 * 23 22 21 25 25 O 1.34297 * 125.79286 * 270.02098 * 21 20 18 26 26 H 1.09010 * 109.46733 * 296.75665 * 1 2 3 27 27 H 1.08998 * 109.47432 * 56.75510 * 1 2 3 28 28 H 1.08993 * 109.47333 * 176.76078 * 1 2 3 29 29 H 1.09000 * 109.88125 * 338.86109 * 4 2 1 30 30 H 1.09002 * 109.88335 * 100.02423 * 4 2 1 31 31 H 0.97001 * 120.00340 * 180.02562 * 9 8 6 32 32 H 1.08992 * 110.36730 * 265.29024 * 14 5 4 33 33 H 1.08996 * 110.36700 * 142.96175 * 14 5 4 34 34 H 0.97001 * 120.00493 * 87.19684 * 17 15 14 35 35 H 1.09002 * 109.46838 * 59.99882 * 20 18 17 36 36 H 1.08996 * 109.46607 * 299.99573 * 20 18 17 37 37 H 1.07994 * 126.58182 * 0.25594 * 22 21 20 38 38 H 1.08000 * 126.57832 * 179.97438 * 23 22 21 39 39 H 1.07995 * 125.79269 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7392 6 6 4.0044 -2.3967 -1.5021 7 1 3.6723 -2.6774 -2.4907 8 6 5.2012 -2.8935 -1.0047 9 7 5.7003 -2.4108 0.1134 10 14 6.1037 -4.2474 -1.9223 11 1 7.1176 -3.6435 -2.8239 12 1 6.7784 -5.1415 -0.9473 13 1 5.1329 -5.0333 -2.7253 14 6 3.4633 -1.2498 0.6873 15 6 2.0790 -0.7955 1.2137 16 1 1.4449 -1.6533 1.4379 17 7 2.2216 0.0695 2.3874 18 6 2.1875 -0.4630 3.6251 19 8 2.0392 -1.6583 3.7671 20 6 2.3336 0.4269 4.8326 21 6 2.2606 -0.4090 6.0843 22 6 3.3039 -0.9878 6.7056 23 6 2.7835 -1.6746 7.8265 24 6 1.4532 -1.4749 7.8228 25 8 1.1424 -0.7071 6.7656 26 1 -0.3633 0.4627 0.9177 27 1 -0.3634 0.5634 -0.8594 28 1 -0.3633 -1.0259 -0.0581 29 1 1.3128 -1.4757 -1.5776 30 1 2.3740 -0.1022 -1.9978 31 1 6.5369 -2.7577 0.4608 32 1 4.1931 -0.4479 0.7983 33 1 3.7960 -2.1426 1.2167 34 1 2.3405 1.0255 2.2739 35 1 1.5300 1.1634 4.8405 36 1 3.2952 0.9386 4.7925 37 1 4.3402 -0.9376 6.4057 38 1 3.3459 -2.2500 8.5469 39 1 0.7539 -1.8654 8.5472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080650142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:45 Heat of formation + Delta-G solvation = 2.335669 kcal Electronic energy + Delta-G solvation = -21628.464399 eV Core-core repulsion = 18345.521428 eV Total energy + Delta-G solvation = -3282.942970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.48773 -39.48918 -37.53121 -33.90503 -33.10130 -32.67619 -31.92733 -30.38605 -28.18169 -26.64983 -25.61685 -23.56527 -21.69653 -21.23839 -20.24128 -20.11079 -19.47076 -17.38107 -16.98473 -16.85012 -15.83757 -15.56586 -15.11069 -14.83364 -14.37308 -13.77904 -13.67806 -13.08066 -12.89341 -12.77271 -12.74002 -12.63509 -12.47599 -12.30081 -11.74119 -11.62505 -11.33461 -10.98936 -10.78625 -10.63881 -10.39098 -9.96469 -9.90200 -9.82899 -9.74696 -9.58037 -8.59214 -8.46150 -8.39099 -6.79542 -5.72410 -3.06083 1.76091 2.67435 2.89662 3.02237 3.41630 3.47636 3.50079 3.60140 4.51834 4.58808 4.98547 5.00267 5.08414 5.15207 5.23570 5.30722 5.35677 5.43390 5.54046 5.75439 5.86006 5.95154 5.99572 6.02708 6.12782 6.15365 6.23004 6.37980 6.46113 6.56464 6.68064 6.79022 6.95543 7.18616 7.45129 7.60038 7.80593 7.87418 8.27343 8.55893 9.20160 9.82668 10.48624 11.40182 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.004605 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.195909 B = 6078.587874 C = 7298.105637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 H 0.075 0.925 4 C 0.141 3.859 5 N -0.602 5.602 6 C -0.232 4.232 7 H 0.077 0.923 8 C -0.005 4.005 9 N -0.916 5.916 10 Si 0.911 3.089 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.170 3.830 15 C 0.118 3.882 16 H 0.092 0.908 17 N -0.712 5.712 18 C 0.511 3.489 19 O -0.527 6.527 20 C -0.061 4.061 21 C 0.009 3.991 22 C -0.196 4.196 23 C -0.212 4.212 24 C -0.044 4.044 25 O -0.174 6.174 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.253 0.747 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.396 0.604 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.796 9.037 11.642 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.130 4.130 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.361 4.361 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.563 5.563 10 Si 0.741 3.259 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.044 3.956 15 C 0.012 3.988 16 H 0.110 0.890 17 N -0.363 5.363 18 C 0.296 3.704 19 O -0.402 6.402 20 C -0.101 4.101 21 C -0.041 4.041 22 C -0.215 4.215 23 C -0.231 4.231 24 C -0.112 4.112 25 O -0.070 6.070 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.230 0.770 35 H 0.126 0.874 36 H 0.141 0.859 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.995 8.131 11.660 16.822 hybrid contribution 0.901 -0.346 -0.395 1.043 sum -8.095 7.785 11.265 15.907 Atomic orbital electron populations 1.21738 0.94946 1.01891 1.00892 1.22416 0.95217 0.99219 0.96133 0.90689 1.21355 0.90383 0.93089 0.93715 1.44360 1.31195 1.50755 1.06556 1.19010 0.99668 1.19006 0.98385 0.90498 1.24830 0.96903 1.00471 0.97999 1.69950 1.20586 1.43631 1.22085 0.86133 0.79558 0.81676 0.78567 1.21606 1.21582 1.20530 1.21674 0.89503 0.99865 0.84569 1.22678 1.00878 0.92622 0.82581 0.88988 1.45814 1.73963 1.11011 1.05502 1.20251 0.77123 0.88929 0.84118 1.90762 1.47997 1.15451 1.86001 1.20117 1.06043 0.96729 0.87237 1.21511 0.83954 1.02995 0.95687 1.21564 1.00128 1.02182 0.97629 1.21796 0.94693 1.05389 1.01231 1.23931 0.96956 0.98575 0.91724 1.83962 1.34700 1.54856 1.33503 0.93110 0.92830 0.92506 0.95491 0.95798 0.93684 0.95390 0.90916 0.77046 0.87369 0.85900 0.83473 0.83591 0.78300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.16 37.16 0.34 -1.51 16 2 C -0.11 -1.82 3.19 -88.79 -0.28 -2.10 16 3 H 0.07 1.12 8.00 -51.92 -0.42 0.70 16 4 C 0.14 2.90 6.84 -3.06 -0.02 2.88 16 5 N -0.60 -15.62 3.39 -170.07 -0.58 -16.20 16 6 C -0.23 -6.61 10.24 -15.06 -0.15 -6.76 16 7 H 0.08 2.11 7.85 -52.49 -0.41 1.69 16 8 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 9 N -0.92 -27.55 10.68 55.49 0.59 -26.96 16 10 Si 0.91 22.51 29.56 -169.99 -5.03 17.49 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 C 0.17 4.20 5.11 -2.53 -0.01 4.18 16 15 C 0.12 2.24 2.87 -65.78 -0.19 2.05 16 16 H 0.09 1.97 7.44 -51.93 -0.39 1.58 16 17 N -0.71 -10.82 5.20 -51.72 -0.27 -11.09 16 18 C 0.51 8.33 7.82 -10.98 -0.09 8.25 16 19 O -0.53 -11.36 15.67 5.55 0.09 -11.28 16 20 C -0.06 -0.71 6.23 -29.03 -0.18 -0.89 16 21 C 0.01 0.13 5.81 -35.62 -0.21 -0.08 16 22 C -0.20 -2.73 10.81 -39.70 -0.43 -3.16 16 23 C -0.21 -2.63 10.91 -39.70 -0.43 -3.06 16 24 C -0.04 -0.52 12.09 29.42 0.36 -0.16 16 25 O -0.17 -2.47 10.65 5.73 0.06 -2.41 16 26 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 29 H 0.03 0.55 7.76 -51.93 -0.40 0.15 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 33 H 0.07 2.11 6.93 -51.93 -0.36 1.75 16 34 H 0.40 4.53 8.57 -40.82 -0.35 4.18 16 35 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.15 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.20 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 328.87 15.07 4.96 4.96 Total: -1.00 -35.67 328.87 -7.25 -42.92 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.68 Total: 3.18 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -1.39 Total: -0.61 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.25 Total: -54.25 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.15 Total: -13.69 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.67 -7.25 -42.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080650142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.258 kcal (2) G-P(sol) polarization free energy of solvation -35.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds