Wall clock time and date at job start Tue Mar 31 2020 00:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.78156 * 2 1 4 4 C 1.54320 * 110.71886 * 236.76519 * 2 1 3 5 5 N 1.47026 * 107.27331 * 219.44137 * 4 2 1 6 6 C 1.36937 * 125.65096 * 178.98446 * 5 4 2 7 7 H 1.08000 * 119.99515 * 349.94286 * 6 5 4 8 8 C 1.38804 * 120.00011 * 169.94538 * 6 5 4 9 9 N 1.31618 * 120.00268 * 350.42088 * 8 6 5 10 10 Si 1.86803 * 119.99966 * 170.41760 * 8 6 5 11 11 H 1.48503 * 109.46872 * 94.14117 * 10 8 6 12 12 H 1.48500 * 109.47114 * 214.13733 * 10 8 6 13 13 H 1.48491 * 109.47302 * 334.14301 * 10 8 6 14 14 C 1.47424 * 108.70189 * 358.94024 * 5 4 2 15 15 C 1.54917 * 104.83192 * 24.12787 * 14 5 4 16 16 H 1.09001 * 111.03663 * 81.08110 * 15 14 5 17 17 N 1.46495 * 111.00203 * 204.91717 * 15 14 5 18 18 C 1.34779 * 119.99924 * 267.19422 * 17 15 14 19 19 O 1.21283 * 120.00045 * 0.02562 * 18 17 15 20 20 C 1.50709 * 119.99958 * 180.02562 * 18 17 15 21 21 C 1.50699 * 109.46764 * 179.97438 * 20 18 17 22 22 C 1.34517 * 125.78537 * 89.71871 * 21 20 18 23 23 C 1.41381 * 106.83838 * 180.25783 * 22 21 20 24 24 C 1.34518 * 106.84335 * 0.02562 * 23 22 21 25 25 O 1.34297 * 125.79286 * 270.02098 * 21 20 18 26 26 H 1.09010 * 109.46733 * 296.75665 * 1 2 3 27 27 H 1.08998 * 109.47432 * 56.75510 * 1 2 3 28 28 H 1.08993 * 109.47333 * 176.76078 * 1 2 3 29 29 H 1.09000 * 109.88125 * 338.86109 * 4 2 1 30 30 H 1.09002 * 109.88335 * 100.02423 * 4 2 1 31 31 H 0.97001 * 120.00340 * 180.02562 * 9 8 6 32 32 H 1.08992 * 110.36730 * 265.29024 * 14 5 4 33 33 H 1.08996 * 110.36700 * 142.96175 * 14 5 4 34 34 H 0.97001 * 120.00493 * 87.19684 * 17 15 14 35 35 H 1.09002 * 109.46838 * 59.99882 * 20 18 17 36 36 H 1.08996 * 109.46607 * 299.99573 * 20 18 17 37 37 H 1.07994 * 126.58182 * 0.25594 * 22 21 20 38 38 H 1.08000 * 126.57832 * 179.97438 * 23 22 21 39 39 H 1.07995 * 125.79269 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0759 -0.7911 -1.2073 5 7 3.2445 -1.5507 -0.7392 6 6 4.0044 -2.3967 -1.5021 7 1 3.6723 -2.6774 -2.4907 8 6 5.2012 -2.8935 -1.0047 9 7 5.7003 -2.4108 0.1134 10 14 6.1037 -4.2474 -1.9223 11 1 7.1176 -3.6435 -2.8239 12 1 6.7784 -5.1415 -0.9473 13 1 5.1329 -5.0333 -2.7253 14 6 3.4633 -1.2498 0.6873 15 6 2.0790 -0.7955 1.2137 16 1 1.4449 -1.6533 1.4379 17 7 2.2216 0.0695 2.3874 18 6 2.1875 -0.4630 3.6251 19 8 2.0392 -1.6583 3.7671 20 6 2.3336 0.4269 4.8326 21 6 2.2606 -0.4090 6.0843 22 6 3.3039 -0.9878 6.7056 23 6 2.7835 -1.6746 7.8265 24 6 1.4532 -1.4749 7.8228 25 8 1.1424 -0.7071 6.7656 26 1 -0.3633 0.4627 0.9177 27 1 -0.3634 0.5634 -0.8594 28 1 -0.3633 -1.0259 -0.0581 29 1 1.3128 -1.4757 -1.5776 30 1 2.3740 -0.1022 -1.9978 31 1 6.5369 -2.7577 0.4608 32 1 4.1931 -0.4479 0.7983 33 1 3.7960 -2.1426 1.2167 34 1 2.3405 1.0255 2.2739 35 1 1.5300 1.1634 4.8405 36 1 3.2952 0.9386 4.7925 37 1 4.3402 -0.9376 6.4057 38 1 3.3459 -2.2500 8.5469 39 1 0.7539 -1.8654 8.5472 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080650142.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:21:44 Heat of formation + Delta-G solvation = -23.077438 kcal Electronic energy + Delta-G solvation = -21629.566394 eV Core-core repulsion = 18345.521428 eV Total energy + Delta-G solvation = -3284.044965 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.46020 -40.91315 -39.14526 -35.63426 -34.37493 -34.04645 -32.97844 -32.18644 -29.73523 -27.95710 -27.27969 -25.24625 -22.77092 -22.63716 -21.69007 -21.51682 -20.80534 -18.90200 -18.41112 -18.16804 -17.27659 -16.92469 -16.59527 -16.22711 -15.76220 -15.52261 -14.96221 -14.46083 -14.43760 -14.24139 -14.00697 -13.74495 -13.68574 -13.53665 -13.28581 -13.05930 -12.87198 -12.66402 -12.63238 -12.22547 -12.04673 -11.87141 -11.68726 -11.45838 -11.01559 -10.81049 -10.72321 -9.98805 -9.37124 -8.89247 -7.91005 -5.26665 0.76878 1.42332 1.45440 1.54585 1.63958 1.68825 2.05909 2.35914 2.49609 3.29196 3.60916 3.66656 3.72762 4.01729 4.04917 4.08431 4.15185 4.19836 4.40122 4.49826 4.54052 4.61328 4.65830 4.90077 4.94108 5.02709 5.04645 5.09315 5.20704 5.24349 5.32786 5.42013 5.49229 5.57325 5.61993 5.74347 6.16637 6.21199 6.61831 7.03464 7.32608 7.73181 8.38118 9.20225 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.004605 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.195909 B = 6078.587874 C = 7298.105637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.091 4.091 3 H 0.102 0.898 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.247 4.247 7 H 0.083 0.917 8 C -0.065 4.065 9 N -0.948 5.948 10 Si 0.977 3.023 11 H -0.280 1.280 12 H -0.297 1.297 13 H -0.267 1.267 14 C 0.181 3.819 15 C 0.135 3.865 16 H 0.066 0.934 17 N -0.697 5.697 18 C 0.507 3.493 19 O -0.587 6.587 20 C -0.050 4.050 21 C -0.013 4.013 22 C -0.219 4.219 23 C -0.231 4.231 24 C -0.041 4.041 25 O -0.189 6.189 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.043 0.957 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.246 0.754 32 H 0.007 0.993 33 H 0.015 0.985 34 H 0.419 0.581 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.166 0.834 39 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.338 10.761 11.715 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.111 4.111 3 H 0.120 0.880 4 C 0.007 3.993 5 N -0.353 5.353 6 C -0.376 4.376 7 H 0.101 0.899 8 C -0.258 4.258 9 N -0.596 5.596 10 Si 0.805 3.195 11 H -0.207 1.207 12 H -0.223 1.223 13 H -0.192 1.192 14 C 0.055 3.945 15 C 0.028 3.972 16 H 0.084 0.916 17 N -0.349 5.349 18 C 0.295 3.705 19 O -0.467 6.467 20 C -0.089 4.089 21 C -0.063 4.063 22 C -0.239 4.239 23 C -0.250 4.250 24 C -0.108 4.108 25 O -0.086 6.086 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.025 0.975 33 H 0.034 0.966 34 H 0.257 0.743 35 H 0.166 0.834 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.183 0.817 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -10.567 9.923 11.711 18.635 hybrid contribution 1.372 -0.912 -0.401 1.696 sum -9.195 9.011 11.309 17.136 Atomic orbital electron populations 1.21692 0.91955 1.01876 1.03154 1.22367 0.97434 0.99166 0.92098 0.88023 1.21624 0.88642 0.93262 0.95782 1.44672 1.32222 1.51312 1.07125 1.19442 0.99968 1.19356 0.98844 0.89925 1.25701 0.98116 1.02920 0.99079 1.70167 1.20705 1.44988 1.23768 0.85094 0.78415 0.78740 0.77281 1.20705 1.22329 1.19206 1.21366 0.92287 0.96671 0.84207 1.22128 0.96802 0.93302 0.84930 0.91562 1.45605 1.73296 1.11738 1.04270 1.21157 0.75297 0.88730 0.85353 1.90740 1.50648 1.18395 1.86877 1.20208 1.09181 0.95903 0.83558 1.21927 0.83967 1.03846 0.96597 1.21881 1.00535 1.02784 0.98658 1.22153 0.95461 1.05910 1.01482 1.24758 0.97623 0.97141 0.91308 1.83957 1.34989 1.55393 1.34232 0.91045 0.90296 0.93774 0.95121 0.95020 0.94444 0.97503 0.96613 0.74321 0.83402 0.82942 0.83434 0.81667 0.74451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.16 71.98 0.66 -2.39 16 2 C -0.09 -2.81 3.19 -9.61 -0.03 -2.84 16 3 H 0.10 2.63 8.00 -2.38 -0.02 2.61 16 4 C 0.13 5.32 6.84 86.73 0.59 5.91 16 5 N -0.63 -33.22 3.39 -691.99 -2.35 -35.57 16 6 C -0.25 -14.35 10.24 84.03 0.86 -13.49 16 7 H 0.08 4.56 7.85 -2.91 -0.02 4.54 16 8 C -0.06 -3.83 5.40 84.86 0.46 -3.37 16 9 N -0.95 -59.53 10.68 21.65 0.23 -59.29 16 10 Si 0.98 47.33 29.56 68.60 2.03 49.35 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 C 0.18 9.31 5.11 86.86 0.44 9.75 16 15 C 0.14 5.16 2.87 46.39 0.13 5.29 16 16 H 0.07 2.91 7.44 -2.39 -0.02 2.89 16 17 N -0.70 -20.30 5.20 -435.94 -2.27 -22.56 16 18 C 0.51 16.26 7.82 87.66 0.69 16.95 16 19 O -0.59 -26.13 15.67 -3.04 -0.05 -26.18 16 20 C -0.05 -1.04 6.23 29.10 0.18 -0.86 16 21 C -0.01 -0.36 5.81 24.83 0.14 -0.21 16 22 C -0.22 -6.11 10.81 22.19 0.24 -5.87 16 23 C -0.23 -5.57 10.91 22.19 0.24 -5.33 16 24 C -0.04 -0.91 12.09 66.97 0.81 -0.10 16 25 O -0.19 -5.14 10.65 -2.43 -0.03 -5.17 16 26 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 29 H 0.03 1.22 7.76 -2.39 -0.02 1.20 16 30 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.01 0.38 8.07 -2.39 -0.02 0.36 16 33 H 0.02 0.96 6.93 -2.39 -0.02 0.94 16 34 H 0.42 8.32 8.57 -92.71 -0.79 7.53 16 35 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 38 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 39 H 0.24 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -83.35 328.87 3.25 -80.10 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.25 Total: 15.87 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: 5.42 Total: 3.44 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -4.38 Total: -117.42 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.07 Total: -31.35 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Total: -83.35 3.25 -80.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080650142.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.025 kcal (2) G-P(sol) polarization free energy of solvation -83.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds