Wall clock time and date at job start Tue Mar 31 2020 00:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 115.54877 * 2 1 4 4 C 1.53068 * 117.53110 * 145.71338 * 2 1 3 5 5 C 1.52997 * 59.98540 * 107.46867 * 4 2 1 6 6 H 1.09003 * 117.49712 * 107.50122 * 5 4 2 7 7 C 1.50699 * 117.49556 * 252.49624 * 5 4 2 8 8 C 1.35139 * 125.61415 * 188.74920 * 7 5 4 9 9 C 1.40357 * 107.11426 * 180.02562 * 8 7 5 10 10 C 1.36545 * 106.70827 * 359.97438 * 9 8 7 11 11 C 1.46665 * 125.98674 * 179.73780 * 10 9 8 12 12 O 1.21694 * 120.00054 * 180.02562 * 11 10 9 13 13 N 1.34774 * 119.99620 * 0.02608 * 11 10 9 14 14 C 1.46507 * 119.99565 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46926 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.46700 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99719 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99988 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00141 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46914 * 90.00035 * 21 19 17 23 23 H 1.48508 * 109.46942 * 209.99978 * 21 19 17 24 24 H 1.48498 * 109.47007 * 329.99654 * 21 19 17 25 25 O 1.33930 * 125.62122 * 8.78754 * 7 5 4 26 26 H 1.09004 * 109.46708 * 205.67142 * 1 2 3 27 27 H 1.08993 * 109.47149 * 325.67355 * 1 2 3 28 28 H 1.09000 * 109.46940 * 85.67752 * 1 2 3 29 29 H 1.09003 * 117.51951 * 359.97438 * 4 2 1 30 30 H 1.09008 * 117.49400 * 214.96032 * 4 2 1 31 31 H 1.08004 * 126.43776 * 0.02562 * 8 7 5 32 32 H 1.08000 * 126.64809 * 180.02562 * 9 8 7 33 33 H 0.96992 * 120.00502 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.46889 * 299.99456 * 14 13 11 35 35 H 1.08994 * 109.47480 * 59.99506 * 14 13 11 36 36 H 1.08999 * 109.46789 * 299.99127 * 15 14 13 37 37 H 1.08994 * 109.47333 * 59.99552 * 15 14 13 38 38 H 0.97002 * 120.00210 * 0.02562 * 16 15 14 39 39 H 0.96995 * 119.99933 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2376 -1.1215 0.7646 5 6 2.2365 -1.1208 -0.7653 6 1 3.1712 -0.8746 -1.2692 7 6 1.3721 -2.1405 -1.4609 8 6 1.3715 -2.3980 -2.7876 9 6 0.4248 -3.4098 -3.0115 10 6 -0.1105 -3.7227 -1.7950 11 6 -1.1483 -4.7280 -1.5430 12 8 -1.5483 -4.9187 -0.4096 13 7 -1.6589 -5.4406 -2.5666 14 6 -2.6959 -6.4444 -2.3149 15 6 -3.0989 -7.1035 -3.6356 16 7 -4.1355 -8.1077 -3.3838 17 6 -4.6550 -8.8311 -4.4240 18 1 -4.3008 -8.6611 -5.4300 19 6 -5.6375 -9.7822 -4.1856 20 7 -6.0702 -9.9884 -2.9597 21 14 -6.3456 -10.7696 -5.6045 22 1 -5.5451 -12.0057 -5.7955 23 1 -7.7531 -11.1333 -5.3006 24 1 -6.3018 -9.9547 -6.8451 25 8 0.4774 -2.9404 -0.8664 26 1 -0.3633 -0.9263 0.4452 27 1 -0.3633 0.8486 0.5795 28 1 -0.3633 0.0775 -1.0248 29 1 1.6132 -1.8594 1.2683 30 1 3.1730 -0.8754 1.2675 31 1 1.9843 -1.9159 -3.5349 32 1 0.1699 -3.8552 -3.9618 33 1 -1.3403 -5.2884 -3.4700 34 1 -2.3101 -7.2023 -1.6331 35 1 -3.5664 -5.9636 -1.8688 36 1 -3.4849 -6.3454 -4.3170 37 1 -2.2286 -7.5843 -4.0822 38 1 -4.4543 -8.2596 -2.4804 39 1 -6.7565 -10.6533 -2.7930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127101230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:10 Heat of formation + Delta-G solvation = 12.846208 kcal Electronic energy + Delta-G solvation = -20442.148709 eV Core-core repulsion = 17159.661509 eV Total energy + Delta-G solvation = -3282.487199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.95509 -39.39560 -38.07836 -35.75807 -34.12428 -33.23650 -31.42091 -30.33047 -28.82749 -27.60007 -24.69537 -23.37223 -22.16766 -21.81648 -21.48944 -20.63216 -20.03633 -18.22717 -17.19853 -16.72584 -16.14997 -16.03266 -15.46280 -15.16155 -14.62756 -14.30450 -13.72156 -13.57692 -13.43259 -13.31587 -13.23443 -13.04531 -12.91844 -12.75297 -12.19445 -11.83652 -11.51633 -11.14834 -11.01011 -10.86137 -10.82511 -10.46571 -10.21066 -10.19585 -10.09283 -9.77814 -9.11105 -8.91757 -8.56775 -7.01855 -5.81174 -3.12329 0.88021 2.03634 2.14217 3.17423 3.35178 3.41640 3.45417 3.48340 3.51404 4.04649 4.25190 4.42251 4.51136 4.57978 4.66332 4.82254 4.92829 5.24002 5.35623 5.40329 5.45427 5.47783 5.48481 5.51804 5.60335 5.65705 5.70028 5.72441 5.90429 5.98154 6.08143 6.09989 6.36890 6.62515 6.65444 6.75148 7.45574 7.64335 8.12627 8.36213 9.47592 10.01567 10.36269 11.41345 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049294 B = 0.002538 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.882590 B =11030.206635 C =11317.980111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.135 4.135 3 H 0.115 0.885 4 C -0.166 4.166 5 C -0.090 4.090 6 H 0.138 0.862 7 C 0.049 3.951 8 C -0.213 4.213 9 C -0.150 4.150 10 C -0.059 4.059 11 C 0.591 3.409 12 O -0.526 6.526 13 N -0.705 5.705 14 C 0.113 3.887 15 C 0.145 3.855 16 N -0.729 5.729 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 O -0.139 6.139 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.402 0.598 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.387 0.613 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.711 21.025 2.285 28.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.153 4.153 3 H 0.133 0.867 4 C -0.203 4.203 5 C -0.108 4.108 6 H 0.155 0.845 7 C -0.004 4.004 8 C -0.232 4.232 9 C -0.171 4.171 10 C -0.112 4.112 11 C 0.376 3.624 12 O -0.403 6.403 13 N -0.358 5.358 14 C -0.010 4.010 15 C 0.016 3.984 16 N -0.374 5.374 17 C -0.376 4.376 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.578 5.578 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 O -0.033 6.033 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.173 0.827 32 H 0.177 0.823 33 H 0.237 0.763 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.221 0.779 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 18.271 20.781 3.265 27.863 hybrid contribution -0.220 -0.576 -1.200 1.349 sum 18.051 20.205 2.065 27.173 Atomic orbital electron populations 1.21432 0.92179 1.02760 1.02306 1.22544 0.96139 0.94104 1.02499 0.86710 1.23264 1.03227 1.01636 0.92141 1.20701 0.98893 0.96590 0.94579 0.84451 1.21702 0.92798 0.94181 0.91738 1.21421 1.04102 1.02341 0.95344 1.22058 0.98080 0.99065 0.97853 1.21691 1.02224 0.99846 0.87473 1.16461 0.80532 0.80061 0.85329 1.90880 1.60620 1.67198 1.21651 1.45509 1.41215 1.39348 1.09687 1.21690 0.89655 0.89887 0.99720 1.20756 0.92818 0.92021 0.92765 1.42179 1.43995 1.42711 1.08564 1.19183 1.15979 1.13802 0.88614 0.90985 1.24791 0.99533 0.99884 0.96613 1.69669 1.32723 1.36969 1.18460 0.86141 0.78287 0.80134 0.81293 1.21602 1.21674 1.20691 1.84031 1.42644 1.40188 1.36431 0.91762 0.91688 0.92063 0.87732 0.87736 0.82731 0.82341 0.76312 0.90747 0.90759 0.95612 0.95610 0.77941 0.93320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.08 9.15 37.16 0.34 -0.74 16 2 C -0.13 -0.93 6.41 -90.58 -0.58 -1.51 16 3 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.17 -1.20 9.81 -26.70 -0.26 -1.46 16 5 C -0.09 -0.67 6.23 -91.77 -0.57 -1.24 16 6 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 7 C 0.05 0.50 5.90 -35.41 -0.21 0.29 16 8 C -0.21 -1.99 10.77 -39.89 -0.43 -2.42 16 9 C -0.15 -1.54 10.34 -39.40 -0.41 -1.95 16 10 C -0.06 -0.80 7.15 -36.79 -0.26 -1.06 16 11 C 0.59 9.37 7.78 -12.86 -0.10 9.27 16 12 O -0.53 -10.49 17.11 -0.27 0.00 -10.50 16 13 N -0.71 -9.89 5.54 -61.62 -0.34 -10.23 16 14 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 15 C 0.14 2.78 6.37 -4.04 -0.03 2.75 16 16 N -0.73 -18.37 5.60 -59.91 -0.34 -18.71 16 17 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 O -0.14 -1.88 9.61 -0.44 0.00 -1.89 16 26 H 0.06 0.67 7.26 -51.93 -0.38 0.29 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.94 7.87 -51.93 -0.41 0.54 16 30 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 31 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 32 H 0.16 1.18 7.40 -52.49 -0.39 0.79 16 33 H 0.40 4.35 7.32 -40.82 -0.30 4.05 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.39 10.32 7.67 -40.82 -0.31 10.00 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 337.98 15.07 5.09 5.09 Total: -1.00 -33.81 337.98 -8.23 -42.04 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -5.56 Total: 8.00 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -2.78 Total: -3.53 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.05 Total: -56.40 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.01 Total: -12.38 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.81 -8.23 -42.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127101230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.885 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds