Wall clock time and date at job start Tue Mar 31 2020 00:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 115.54877 * 2 1 4 4 C 1.53068 * 117.53110 * 145.71338 * 2 1 3 5 5 C 1.52997 * 59.98540 * 107.46867 * 4 2 1 6 6 H 1.09003 * 117.49712 * 107.50122 * 5 4 2 7 7 C 1.50699 * 117.49556 * 252.49624 * 5 4 2 8 8 C 1.35139 * 125.61415 * 188.74920 * 7 5 4 9 9 C 1.40357 * 107.11426 * 180.02562 * 8 7 5 10 10 C 1.36545 * 106.70827 * 359.97438 * 9 8 7 11 11 C 1.46665 * 125.98674 * 179.73780 * 10 9 8 12 12 O 1.21694 * 120.00054 * 180.02562 * 11 10 9 13 13 N 1.34774 * 119.99620 * 0.02608 * 11 10 9 14 14 C 1.46507 * 119.99565 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.46926 * 179.97438 * 14 13 11 16 16 N 1.46499 * 109.46700 * 179.97438 * 15 14 13 17 17 C 1.36940 * 119.99719 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00140 * 359.97438 * 17 16 15 19 19 C 1.38808 * 119.99988 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00141 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99959 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46914 * 90.00035 * 21 19 17 23 23 H 1.48508 * 109.46942 * 209.99978 * 21 19 17 24 24 H 1.48498 * 109.47007 * 329.99654 * 21 19 17 25 25 O 1.33930 * 125.62122 * 8.78754 * 7 5 4 26 26 H 1.09004 * 109.46708 * 205.67142 * 1 2 3 27 27 H 1.08993 * 109.47149 * 325.67355 * 1 2 3 28 28 H 1.09000 * 109.46940 * 85.67752 * 1 2 3 29 29 H 1.09003 * 117.51951 * 359.97438 * 4 2 1 30 30 H 1.09008 * 117.49400 * 214.96032 * 4 2 1 31 31 H 1.08004 * 126.43776 * 0.02562 * 8 7 5 32 32 H 1.08000 * 126.64809 * 180.02562 * 9 8 7 33 33 H 0.96992 * 120.00502 * 359.97438 * 13 11 10 34 34 H 1.09004 * 109.46889 * 299.99456 * 14 13 11 35 35 H 1.08994 * 109.47480 * 59.99506 * 14 13 11 36 36 H 1.08999 * 109.46789 * 299.99127 * 15 14 13 37 37 H 1.08994 * 109.47333 * 59.99552 * 15 14 13 38 38 H 0.97002 * 120.00210 * 0.02562 * 16 15 14 39 39 H 0.96995 * 119.99933 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2376 -1.1215 0.7646 5 6 2.2365 -1.1208 -0.7653 6 1 3.1712 -0.8746 -1.2692 7 6 1.3721 -2.1405 -1.4609 8 6 1.3715 -2.3980 -2.7876 9 6 0.4248 -3.4098 -3.0115 10 6 -0.1105 -3.7227 -1.7950 11 6 -1.1483 -4.7280 -1.5430 12 8 -1.5483 -4.9187 -0.4096 13 7 -1.6589 -5.4406 -2.5666 14 6 -2.6959 -6.4444 -2.3149 15 6 -3.0989 -7.1035 -3.6356 16 7 -4.1355 -8.1077 -3.3838 17 6 -4.6550 -8.8311 -4.4240 18 1 -4.3008 -8.6611 -5.4300 19 6 -5.6375 -9.7822 -4.1856 20 7 -6.0702 -9.9884 -2.9597 21 14 -6.3456 -10.7696 -5.6045 22 1 -5.5451 -12.0057 -5.7955 23 1 -7.7531 -11.1333 -5.3006 24 1 -6.3018 -9.9547 -6.8451 25 8 0.4774 -2.9404 -0.8664 26 1 -0.3633 -0.9263 0.4452 27 1 -0.3633 0.8486 0.5795 28 1 -0.3633 0.0775 -1.0248 29 1 1.6132 -1.8594 1.2683 30 1 3.1730 -0.8754 1.2675 31 1 1.9843 -1.9159 -3.5349 32 1 0.1699 -3.8552 -3.9618 33 1 -1.3403 -5.2884 -3.4700 34 1 -2.3101 -7.2023 -1.6331 35 1 -3.5664 -5.9636 -1.8688 36 1 -3.4849 -6.3454 -4.3170 37 1 -2.2286 -7.5843 -4.0822 38 1 -4.4543 -8.2596 -2.4804 39 1 -6.7565 -10.6533 -2.7930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127101230.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:10 Heat of formation + Delta-G solvation = -10.177652 kcal Electronic energy + Delta-G solvation = -20443.147098 eV Core-core repulsion = 17159.661509 eV Total energy + Delta-G solvation = -3283.485589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.81550 -40.66286 -38.68143 -37.37418 -35.71654 -34.24796 -33.18558 -31.41071 -29.69195 -28.99512 -26.06163 -24.85490 -23.24694 -22.84191 -22.55461 -21.53630 -20.83214 -19.52424 -19.01992 -17.62402 -17.33224 -16.86066 -16.56308 -16.50791 -16.21563 -15.64746 -15.15801 -15.13421 -14.77550 -14.27311 -14.12090 -14.11229 -13.91230 -13.40059 -13.15342 -13.05069 -12.83162 -12.68714 -12.55391 -12.42058 -12.08722 -11.87795 -11.63421 -11.43910 -11.04119 -10.99973 -10.98800 -10.38103 -9.40652 -9.07136 -7.96810 -5.28501 -0.07288 1.16460 1.26119 1.49305 1.51528 1.59968 2.04402 2.40003 2.59946 2.83615 3.33860 3.37688 3.56185 3.71651 3.87169 3.90289 3.94188 4.12869 4.17423 4.18840 4.38776 4.53052 4.63607 4.69046 4.73986 4.79792 4.83023 4.93381 4.95362 5.02259 5.10169 5.10467 5.20138 5.33715 5.41283 5.48975 5.86838 6.23775 6.35097 6.95463 7.30144 8.01415 8.24181 9.26938 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.049294 B = 0.002538 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.882590 B =11030.206635 C =11317.980111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 H 0.145 0.855 4 C -0.172 4.172 5 C -0.094 4.094 6 H 0.172 0.828 7 C 0.046 3.954 8 C -0.214 4.214 9 C -0.121 4.121 10 C -0.106 4.106 11 C 0.591 3.409 12 O -0.582 6.582 13 N -0.688 5.688 14 C 0.129 3.871 15 C 0.150 3.850 16 N -0.748 5.748 17 C -0.247 4.247 18 H 0.085 0.915 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.980 3.020 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.265 1.265 25 O -0.169 6.169 26 H 0.033 0.967 27 H 0.078 0.922 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.190 0.810 32 H 0.190 0.810 33 H 0.421 0.579 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.374 0.626 39 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.023 22.910 -0.245 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.145 4.145 3 H 0.163 0.837 4 C -0.209 4.209 5 C -0.112 4.112 6 H 0.189 0.811 7 C -0.006 4.006 8 C -0.232 4.232 9 C -0.141 4.141 10 C -0.158 4.158 11 C 0.379 3.621 12 O -0.464 6.464 13 N -0.341 5.341 14 C 0.005 3.995 15 C 0.023 3.977 16 N -0.391 5.391 17 C -0.378 4.378 18 H 0.103 0.897 19 C -0.271 4.271 20 N -0.622 5.622 21 Si 0.808 3.192 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.189 1.189 25 O -0.064 6.064 26 H 0.052 0.948 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.208 0.792 32 H 0.207 0.793 33 H 0.259 0.741 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.206 0.794 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.630 22.701 0.661 30.682 hybrid contribution -0.825 -1.025 -0.402 1.376 sum 19.805 21.676 0.259 29.362 Atomic orbital electron populations 1.21428 0.93859 1.01741 1.01847 1.22641 0.94880 0.95247 1.01774 0.83686 1.23285 1.03973 1.01353 0.92314 1.21073 0.99618 0.95885 0.94587 0.81091 1.22521 0.91751 0.93593 0.92781 1.21868 1.03982 1.01880 0.95483 1.22503 0.96258 0.97788 0.97581 1.21320 1.04012 1.01563 0.88882 1.16845 0.80544 0.80124 0.84598 1.90842 1.62678 1.69061 1.23771 1.45197 1.40222 1.38272 1.10457 1.21282 0.89876 0.89956 0.98368 1.20846 0.91833 0.91223 0.93817 1.42423 1.45260 1.43853 1.07578 1.19657 1.15282 1.13252 0.89633 0.89688 1.25693 1.00623 1.01641 0.99100 1.69842 1.33659 1.37992 1.20708 0.85049 0.76799 0.78611 0.78712 1.21290 1.22412 1.18914 1.84013 1.43762 1.41079 1.37557 0.94786 0.90344 0.92619 0.90599 0.85242 0.79247 0.79284 0.74117 0.92243 0.92253 0.93994 0.93984 0.79431 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.15 71.98 0.66 -1.50 16 2 C -0.13 -1.48 6.41 -10.77 -0.07 -1.55 16 3 H 0.15 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.17 -2.28 9.81 30.62 0.30 -1.98 16 5 C -0.09 -1.16 6.23 -11.54 -0.07 -1.23 16 6 H 0.17 0.95 8.14 -2.39 -0.02 0.93 16 7 C 0.05 0.88 5.90 24.97 0.15 1.03 16 8 C -0.21 -3.30 10.77 22.07 0.24 -3.06 16 9 C -0.12 -2.19 10.34 22.39 0.23 -1.96 16 10 C -0.11 -2.85 7.15 24.08 0.17 -2.67 16 11 C 0.59 19.34 7.78 86.44 0.67 20.01 16 12 O -0.58 -24.78 17.11 0.89 0.02 -24.76 16 13 N -0.69 -19.07 5.54 -467.07 -2.59 -21.66 16 14 C 0.13 4.47 5.79 86.38 0.50 4.97 16 15 C 0.15 5.59 6.37 86.38 0.55 6.15 16 16 N -0.75 -37.80 5.60 -343.46 -1.92 -39.72 16 17 C -0.25 -13.55 9.99 84.03 0.84 -12.71 16 18 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 20 N -0.97 -60.09 13.06 21.65 0.28 -59.81 16 21 Si 0.98 45.60 29.55 68.60 2.03 47.63 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 25 O -0.17 -4.68 9.61 0.27 0.00 -4.68 16 26 H 0.03 0.75 7.26 -2.38 -0.02 0.74 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.46 7.87 -2.39 -0.02 1.44 16 30 H 0.13 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.19 1.54 8.06 -2.91 -0.02 1.51 16 32 H 0.19 2.06 7.40 -2.91 -0.02 2.04 16 33 H 0.42 8.27 7.32 -92.71 -0.68 7.59 16 34 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.37 20.53 7.67 -92.71 -0.71 19.82 16 39 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -76.22 337.98 2.14 -74.08 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.32 Total: 27.44 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.64 Total: 1.49 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -4.23 Total: -121.19 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: 0.02 Total: -29.44 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -76.22 2.14 -74.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127101230.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.903 kcal (2) G-P(sol) polarization free energy of solvation -76.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds