Wall clock time and date at job start Tue Mar 31 2020 01:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47443 * 2 1 4 4 O 1.42903 * 109.47449 * 239.99826 * 2 1 3 5 5 C 1.35900 * 116.99768 * 84.94925 * 4 2 1 6 6 C 1.38734 * 120.05170 * 174.27940 * 5 4 2 7 7 C 1.38149 * 119.94107 * 179.74963 * 6 5 4 8 8 C 1.38268 * 120.05439 * 0.49906 * 7 6 5 9 9 C 1.38265 * 120.11166 * 359.77873 * 8 7 6 10 10 C 1.38151 * 120.05832 * 359.96853 * 9 8 7 11 11 C 1.50703 * 109.47014 * 119.99996 * 2 1 3 12 12 O 1.21285 * 120.00199 * 114.99526 * 11 2 1 13 13 N 1.34773 * 120.00185 * 295.00131 * 11 2 1 14 14 C 1.46497 * 120.00354 * 179.97438 * 13 11 2 15 15 C 1.53005 * 109.47165 * 179.97438 * 14 13 11 16 16 N 1.46498 * 109.46787 * 180.02562 * 15 14 13 17 17 C 1.36942 * 120.00009 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99629 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00366 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99897 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 119.99856 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46880 * 90.00355 * 21 19 17 23 23 H 1.48493 * 109.47284 * 210.00037 * 21 19 17 24 24 H 1.48494 * 109.47481 * 330.00608 * 21 19 17 25 25 H 1.09003 * 109.47131 * 60.00072 * 1 2 3 26 26 H 1.08993 * 109.47224 * 300.00163 * 1 2 3 27 27 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.07998 * 120.02897 * 359.97438 * 6 5 4 29 29 H 1.07995 * 119.97207 * 180.23135 * 7 6 5 30 30 H 1.08002 * 119.94357 * 179.74409 * 8 7 6 31 31 H 1.08007 * 119.97244 * 179.97438 * 9 8 7 32 32 H 1.07994 * 120.02689 * 179.97438 * 10 9 8 33 33 H 0.97004 * 120.00000 * 0.02562 * 13 11 2 34 34 H 1.08998 * 109.47305 * 299.99704 * 14 13 11 35 35 H 1.09002 * 109.46800 * 60.00143 * 14 13 11 36 36 H 1.08998 * 109.46897 * 300.00113 * 15 14 13 37 37 H 1.09002 * 109.47016 * 60.00434 * 15 14 13 38 38 H 0.97000 * 120.00803 * 0.02562 * 16 15 14 39 39 H 0.97000 * 119.99280 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.1116 0.0623 -2.3044 6 6 2.6777 -0.4943 -3.4421 7 6 2.7788 0.2542 -4.5988 8 6 2.3257 1.5604 -4.6202 9 6 1.7663 2.1192 -3.4859 10 6 1.6582 1.3732 -2.3282 11 6 2.0323 -0.7104 1.2305 12 8 2.6529 -1.7468 1.1216 13 7 1.7919 -0.1942 2.4520 14 6 2.2797 -0.8851 3.6482 15 6 1.8755 -0.0945 4.8943 16 7 2.3639 -0.7851 6.0904 17 6 2.1196 -0.2606 7.3316 18 1 1.5674 0.6624 7.4286 19 6 2.5828 -0.9146 8.4650 20 7 2.3484 -0.4101 9.6578 21 14 3.5386 -2.5107 8.2971 22 1 4.9883 -2.2097 8.1816 23 1 3.3028 -3.3572 9.4942 24 1 3.0850 -3.2340 7.0822 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 3.0358 -1.5130 -3.4246 29 1 3.2160 -0.1797 -5.4858 30 1 2.4093 2.1453 -5.5242 31 1 1.4135 3.1399 -3.5050 32 1 1.2216 1.8103 -1.4424 33 1 1.2951 0.6344 2.5392 34 1 1.8446 -1.8835 3.6940 35 1 3.3660 -0.9637 3.6048 36 1 2.3109 0.9037 4.8482 37 1 0.7892 -0.0155 4.9379 38 1 2.8602 -1.6139 6.0034 39 1 2.6718 -0.8674 10.4498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149777798.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:09 Heat of formation + Delta-G solvation = -30.927688 kcal Electronic energy + Delta-G solvation = -20488.847277 eV Core-core repulsion = 17204.461899 eV Total energy + Delta-G solvation = -3284.385378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87147 -39.48219 -37.59782 -35.88798 -34.11941 -32.61567 -31.42337 -31.05744 -29.95591 -28.20530 -25.12489 -23.59639 -22.97438 -22.23056 -21.56145 -20.29941 -18.73451 -18.01665 -17.23739 -16.52542 -16.06373 -15.96794 -15.37271 -15.17960 -14.75368 -14.48889 -14.08047 -13.80102 -13.78682 -13.73310 -13.41890 -12.89125 -12.73060 -12.67385 -12.16464 -11.90078 -11.68862 -11.55850 -11.37940 -11.14170 -10.99756 -10.87943 -10.19393 -9.88332 -9.65626 -9.34090 -9.14628 -8.95104 -8.52387 -7.34659 -5.83454 -3.21302 0.99237 1.11035 2.37721 2.45344 3.35807 3.37901 3.40086 3.44529 3.45916 4.26317 4.42971 4.51987 4.53738 4.54649 4.59134 4.79400 5.01102 5.04208 5.17554 5.23468 5.28339 5.33666 5.39866 5.54307 5.59636 5.66216 5.68827 5.89224 5.97389 6.06182 6.19680 6.25959 6.41040 6.51963 6.53227 7.05568 7.38044 7.89359 8.08178 8.34449 9.11865 9.84204 10.02082 11.34240 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.044240 B = 0.002643 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.755927 B =10590.677642 C =10904.215372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.067 3.933 3 H 0.099 0.901 4 O -0.284 6.284 5 C 0.132 3.868 6 C -0.150 4.150 7 C -0.081 4.081 8 C -0.162 4.162 9 C -0.080 4.080 10 C -0.213 4.213 11 C 0.515 3.485 12 O -0.518 6.518 13 N -0.717 5.717 14 C 0.108 3.892 15 C 0.149 3.851 16 N -0.752 5.752 17 C -0.250 4.250 18 H 0.091 0.909 19 C 0.007 3.993 20 N -0.931 5.931 21 Si 0.885 3.115 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.276 1.276 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.402 0.598 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.364 0.636 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.357 5.339 -28.934 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 H 0.117 0.883 4 O -0.197 6.197 5 C 0.086 3.914 6 C -0.169 4.169 7 C -0.099 4.099 8 C -0.180 4.180 9 C -0.098 4.098 10 C -0.232 4.232 11 C 0.299 3.701 12 O -0.392 6.392 13 N -0.371 5.371 14 C -0.015 4.015 15 C 0.021 3.979 16 N -0.399 5.399 17 C -0.380 4.380 18 H 0.109 0.891 19 C -0.189 4.189 20 N -0.578 5.578 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.202 1.202 25 H 0.094 0.906 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.052 0.948 37 H 0.051 0.949 38 H 0.197 0.803 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.934 4.511 -28.766 29.265 hybrid contribution 0.349 -0.478 0.190 0.621 sum -2.585 4.033 -28.577 28.976 Atomic orbital electron populations 1.22345 0.92395 1.04676 1.03977 1.22211 0.95890 0.97020 0.84154 0.88307 1.86227 1.80875 1.36898 1.15686 1.19113 0.95133 0.90383 0.86740 1.20509 1.03491 1.01611 0.91269 1.20993 0.97770 0.94017 0.97078 1.21083 1.02235 0.95882 0.98776 1.20965 0.97137 0.99424 0.92278 1.21335 1.07197 0.94329 1.00315 1.19991 0.80389 0.85684 0.84026 1.90757 1.39216 1.22934 1.86307 1.45748 1.57944 1.27993 1.05385 1.21652 0.99903 0.96717 0.83246 1.20727 0.97582 0.94831 0.84746 1.42530 1.67815 1.27475 1.02072 1.18995 1.30614 1.06868 0.81490 0.89073 1.24680 1.00530 0.98647 0.95048 1.69701 1.50678 1.40476 0.96954 0.86541 0.80454 0.84447 0.77077 1.20891 1.21555 1.20157 0.90586 0.89925 0.90496 0.85013 0.85332 0.85933 0.85728 0.85178 0.76386 0.91096 0.91121 0.94834 0.94858 0.80345 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 9.13 37.16 0.34 -1.01 16 2 C 0.07 0.69 2.64 -27.88 -0.07 0.61 16 3 H 0.10 0.77 6.31 -51.93 -0.33 0.44 16 4 O -0.28 -3.59 9.34 -39.29 -0.37 -3.96 16 5 C 0.13 1.41 6.60 -39.22 -0.26 1.16 16 6 C -0.15 -1.48 9.99 -39.43 -0.39 -1.87 16 7 C -0.08 -0.63 10.04 -39.60 -0.40 -1.03 16 8 C -0.16 -1.17 10.04 -39.56 -0.40 -1.57 16 9 C -0.08 -0.59 10.04 -39.60 -0.40 -0.99 16 10 C -0.21 -1.82 8.24 -39.43 -0.33 -2.15 16 11 C 0.52 7.05 7.18 -10.99 -0.08 6.97 16 12 O -0.52 -9.56 16.51 -14.31 -0.24 -9.80 16 13 N -0.72 -8.74 5.52 -60.29 -0.33 -9.07 16 14 C 0.11 1.68 5.79 -4.04 -0.02 1.66 16 15 C 0.15 2.67 6.37 -4.04 -0.03 2.65 16 16 N -0.75 -17.60 5.41 -59.91 -0.32 -17.92 16 17 C -0.25 -6.99 10.47 -15.06 -0.16 -7.14 16 18 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 19 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.96 13.97 55.49 0.78 -28.19 16 21 Si 0.88 22.07 27.74 -169.99 -4.71 17.36 16 22 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.50 6.52 56.52 0.37 -6.14 16 25 H 0.08 0.49 6.91 -51.93 -0.36 0.13 16 26 H 0.08 0.47 7.92 -51.93 -0.41 0.06 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 30 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 32 H 0.13 0.87 5.43 -52.49 -0.29 0.58 16 33 H 0.40 3.54 8.26 -40.82 -0.34 3.21 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.36 8.40 5.53 -40.82 -0.23 8.17 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 330.91 15.07 4.99 4.99 Total: -1.00 -35.15 330.91 -7.84 -42.99 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.34 Total: 6.21 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.29 Total: -2.60 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: 0.12 Total: -55.18 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.60 Total: -13.76 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.15 -7.84 -42.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149777798.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.058 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds