Wall clock time and date at job start Tue Mar 31 2020 00:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47356 * 2 1 4 4 O 1.45199 * 109.47613 * 179.97438 * 3 2 1 5 5 C 1.34226 * 117.00095 * 180.02562 * 4 3 2 6 6 O 1.20818 * 120.00144 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99700 * 180.02562 * 5 4 3 8 8 N 1.46502 * 109.46919 * 180.02562 * 7 5 4 9 9 C 1.38369 * 120.00005 * 180.02562 * 8 7 5 10 10 C 1.39705 * 119.42976 * 359.72289 * 9 8 7 11 11 C 1.36569 * 119.49388 * 180.28372 * 10 9 8 12 12 C 1.41319 * 118.40483 * 359.97438 * 11 10 9 13 13 C 1.41200 * 120.56750 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00199 * 204.90340 * 13 12 11 15 15 C 1.39871 * 119.99885 * 24.90539 * 13 12 11 16 16 N 1.30900 * 120.00083 * 14.67502 * 15 13 12 17 17 Si 1.86806 * 119.99959 * 194.68101 * 15 13 12 18 18 H 1.48501 * 109.47207 * 89.99622 * 17 15 13 19 19 H 1.48498 * 109.47109 * 210.00016 * 17 15 13 20 20 H 1.48506 * 109.47007 * 329.99656 * 17 15 13 21 21 C 1.40752 * 118.86564 * 0.02562 * 12 11 10 22 22 C 1.50698 * 119.81945 * 180.02562 * 21 12 11 23 23 N 1.31489 * 120.36286 * 0.02562 * 21 12 11 24 24 H 1.09000 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00165 * 1 2 3 26 26 H 1.09002 * 109.46596 * 59.99763 * 1 2 3 27 27 H 1.09000 * 109.47237 * 240.00579 * 2 1 3 28 28 H 1.08997 * 109.47453 * 120.00107 * 2 1 3 29 29 H 1.09008 * 109.46861 * 59.99641 * 3 2 1 30 30 H 1.08999 * 109.47437 * 300.00476 * 3 2 1 31 31 H 1.09002 * 109.47429 * 59.99814 * 7 5 4 32 32 H 1.09004 * 109.46844 * 299.99326 * 7 5 4 33 33 H 0.97005 * 120.00076 * 359.97438 * 8 7 5 34 34 H 1.08006 * 120.25619 * 0.25468 * 10 9 8 35 35 H 1.07998 * 120.79425 * 179.97438 * 11 10 9 36 36 H 0.97008 * 119.99873 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47543 * 269.98135 * 22 21 12 38 38 H 1.09002 * 109.46468 * 29.98542 * 22 21 12 39 39 H 1.09004 * 109.47029 * 149.97638 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4921 1.4426 0.0006 5 6 4.1014 2.6385 0.0012 6 8 3.4434 3.6518 0.0008 7 6 5.6063 2.7174 0.0013 8 7 6.0217 4.1223 0.0026 9 6 7.3670 4.4460 0.0024 10 6 8.3191 3.4236 0.0068 11 6 9.6472 3.7416 0.0124 12 6 10.0115 5.1070 0.0131 13 6 11.3713 5.4874 0.0194 14 1 11.6609 6.4502 0.4139 15 6 12.3432 4.6174 -0.4853 16 7 11.9872 3.5915 -1.2163 17 14 14.1494 4.9192 -0.1160 18 1 14.5234 4.2132 1.1358 19 1 14.9763 4.4082 -1.2386 20 1 14.3842 6.3763 0.0485 21 6 8.9957 6.0813 0.0085 22 6 9.3599 7.5436 0.0085 23 7 7.7307 5.7226 0.0042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 5.9961 2.2237 -0.8889 32 1 5.9960 2.2229 0.8912 33 1 5.3536 4.8256 0.0029 34 1 8.0072 2.3895 0.0062 35 1 10.4009 2.9681 0.0163 36 1 12.6613 2.9883 -1.5666 37 1 9.4436 7.8973 1.0361 38 1 10.3133 7.6805 -0.5017 39 1 8.5862 8.1108 -0.5091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162493708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:34 Heat of formation + Delta-G solvation = -65.867988 kcal Electronic energy + Delta-G solvation = -20589.824824 eV Core-core repulsion = 17303.924321 eV Total energy + Delta-G solvation = -3285.900503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.58181 -38.67141 -37.03421 -35.16552 -34.15525 -33.56136 -31.12400 -30.45946 -28.07598 -26.87226 -26.24324 -24.11600 -21.94727 -21.41374 -21.26303 -19.81118 -17.94270 -17.21399 -16.95815 -16.95656 -15.57452 -15.26244 -15.21261 -14.94463 -14.05771 -13.90756 -13.66927 -13.36920 -13.08717 -12.74992 -12.60254 -12.53060 -12.25897 -11.80262 -11.62069 -11.49116 -11.47687 -11.40126 -11.23772 -11.14874 -10.82450 -10.69614 -10.54445 -10.52196 -9.68960 -9.40984 -8.72573 -8.17177 -8.01364 -6.83784 -6.61527 -4.20120 2.12630 2.40339 2.71468 2.97086 3.09186 3.12321 3.28185 3.95194 4.10169 4.43392 4.55184 4.65077 4.68946 4.93050 5.09086 5.24741 5.26965 5.43759 5.45504 5.58744 5.69035 5.70475 5.80478 5.96291 6.27408 6.38103 6.45484 6.50073 6.70522 6.81418 7.05001 7.21973 7.34528 7.44327 7.63056 7.74535 7.89597 8.21019 8.42572 8.62577 8.84375 8.90078 9.71926 10.23571 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035448 B = 0.003010 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.710428 B = 9300.364246 C = 9998.399185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.065 3.935 4 O -0.357 6.357 5 C 0.461 3.539 6 O -0.503 6.503 7 C 0.154 3.846 8 N -0.739 5.739 9 C 0.283 3.717 10 C -0.210 4.210 11 C -0.091 4.091 12 C 0.034 3.966 13 C -0.450 4.450 14 H 0.081 0.919 15 C 0.072 3.928 16 N -0.807 5.807 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.262 1.262 21 C 0.038 3.962 22 C -0.071 4.071 23 N -0.516 5.516 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.401 0.599 34 H 0.098 0.902 35 H 0.131 0.869 36 H 0.279 0.721 37 H 0.048 0.952 38 H 0.068 0.932 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.952 -7.705 1.683 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.009 4.009 4 O -0.273 6.273 5 C 0.304 3.696 6 O -0.390 6.390 7 C 0.027 3.973 8 N -0.383 5.383 9 C 0.051 3.949 10 C -0.233 4.233 11 C -0.118 4.118 12 C 0.029 3.971 13 C -0.481 4.481 14 H 0.099 0.901 15 C -0.144 4.144 16 N -0.434 5.434 17 Si 0.734 3.266 18 H -0.195 1.195 19 H -0.205 1.205 20 H -0.186 1.186 21 C -0.101 4.101 22 C -0.129 4.129 23 N -0.232 5.232 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.238 0.762 34 H 0.116 0.884 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.668 -7.140 1.539 15.497 hybrid contribution 1.052 -0.425 0.036 1.135 sum -12.616 -7.565 1.575 14.795 Atomic orbital electron populations 1.21693 0.94192 1.02519 1.02353 1.21522 0.96083 0.94704 1.03886 1.23142 0.76360 0.98621 1.02742 1.86470 1.23411 1.33285 1.84157 1.23853 0.92303 0.81333 0.72153 1.90653 1.66888 1.36365 1.45126 1.20345 0.85394 0.87139 1.04410 1.43306 1.04528 1.03508 1.86991 1.17499 0.83129 0.89352 1.04872 1.20822 0.94161 0.96871 1.11493 1.21339 0.93812 0.97321 0.99294 1.18193 0.93881 0.91483 0.93582 1.19375 0.90613 1.02573 1.35580 0.90129 1.25878 1.01527 0.94258 0.92744 1.69803 1.36155 1.12836 1.24562 0.86294 0.81695 0.79847 0.78760 1.19463 1.20468 1.18646 1.20753 0.86741 0.95271 1.07304 1.20261 1.00747 0.91522 1.00320 1.66252 1.21235 1.17380 1.18335 0.91645 0.92309 0.92306 0.90652 0.90664 0.91169 0.91152 0.88713 0.88761 0.76248 0.88381 0.85130 0.91039 0.93344 0.91277 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.91 6.31 -26.73 -0.17 -1.07 16 3 C 0.07 0.65 5.47 37.16 0.20 0.85 16 4 O -0.36 -4.37 10.22 -39.25 -0.40 -4.77 16 5 C 0.46 6.64 8.03 36.01 0.29 6.93 16 6 O -0.50 -8.52 15.42 -18.74 -0.29 -8.81 16 7 C 0.15 2.30 5.46 -5.19 -0.03 2.27 16 8 N -0.74 -14.24 5.67 -61.53 -0.35 -14.59 16 9 C 0.28 6.53 7.64 -155.13 -1.19 5.35 16 10 C -0.21 -4.79 9.24 -39.64 -0.37 -5.15 16 11 C -0.09 -2.31 8.73 -39.01 -0.34 -2.65 16 12 C 0.03 0.89 5.59 -106.65 -0.60 0.29 16 13 C -0.45 -11.58 8.16 -37.85 -0.31 -11.89 16 14 H 0.08 1.98 6.84 -52.49 -0.36 1.62 16 15 C 0.07 1.76 5.22 -17.34 -0.09 1.67 16 16 N -0.81 -20.41 10.83 55.54 0.60 -19.81 16 17 Si 0.91 18.41 29.58 -169.99 -5.03 13.38 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 C 0.04 0.97 6.86 -81.79 -0.56 0.41 16 22 C -0.07 -1.52 9.58 36.00 0.34 -1.18 16 23 N -0.52 -12.89 10.29 -8.05 -0.08 -12.97 16 24 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.69 8.13 -51.92 -0.42 0.27 16 30 H 0.07 0.70 8.13 -51.93 -0.42 0.27 16 31 H 0.10 1.31 7.91 -51.93 -0.41 0.90 16 32 H 0.09 1.27 7.90 -51.93 -0.41 0.86 16 33 H 0.40 7.92 7.56 -40.82 -0.31 7.61 16 34 H 0.10 1.91 6.64 -52.48 -0.35 1.56 16 35 H 0.13 3.37 6.17 -52.49 -0.32 3.04 16 36 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 1.45 6.76 -51.93 -0.35 1.10 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 330.86 15.07 4.99 4.99 Total: -1.00 -29.49 330.86 -8.45 -37.95 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.45 Total: 9.32 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -2.44 Total: -4.68 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.17 Total: -47.37 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.69 Total: -13.59 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.49 -8.45 -37.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162493708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.922 kcal (2) G-P(sol) polarization free energy of solvation -29.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds