Wall clock time and date at job start Tue Mar 31 2020 00:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47356 * 2 1 4 4 O 1.45199 * 109.47613 * 179.97438 * 3 2 1 5 5 C 1.34226 * 117.00095 * 180.02562 * 4 3 2 6 6 O 1.20818 * 120.00144 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99700 * 180.02562 * 5 4 3 8 8 N 1.46502 * 109.46919 * 180.02562 * 7 5 4 9 9 C 1.38369 * 120.00005 * 180.02562 * 8 7 5 10 10 C 1.39705 * 119.42976 * 359.72289 * 9 8 7 11 11 C 1.36569 * 119.49388 * 180.28372 * 10 9 8 12 12 C 1.41319 * 118.40483 * 359.97438 * 11 10 9 13 13 C 1.41200 * 120.56750 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00199 * 204.90340 * 13 12 11 15 15 C 1.39871 * 119.99885 * 24.90539 * 13 12 11 16 16 N 1.30900 * 120.00083 * 14.67502 * 15 13 12 17 17 Si 1.86806 * 119.99959 * 194.68101 * 15 13 12 18 18 H 1.48501 * 109.47207 * 89.99622 * 17 15 13 19 19 H 1.48498 * 109.47109 * 210.00016 * 17 15 13 20 20 H 1.48506 * 109.47007 * 329.99656 * 17 15 13 21 21 C 1.40752 * 118.86564 * 0.02562 * 12 11 10 22 22 C 1.50698 * 119.81945 * 180.02562 * 21 12 11 23 23 N 1.31489 * 120.36286 * 0.02562 * 21 12 11 24 24 H 1.09000 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47069 * 300.00165 * 1 2 3 26 26 H 1.09002 * 109.46596 * 59.99763 * 1 2 3 27 27 H 1.09000 * 109.47237 * 240.00579 * 2 1 3 28 28 H 1.08997 * 109.47453 * 120.00107 * 2 1 3 29 29 H 1.09008 * 109.46861 * 59.99641 * 3 2 1 30 30 H 1.08999 * 109.47437 * 300.00476 * 3 2 1 31 31 H 1.09002 * 109.47429 * 59.99814 * 7 5 4 32 32 H 1.09004 * 109.46844 * 299.99326 * 7 5 4 33 33 H 0.97005 * 120.00076 * 359.97438 * 8 7 5 34 34 H 1.08006 * 120.25619 * 0.25468 * 10 9 8 35 35 H 1.07998 * 120.79425 * 179.97438 * 11 10 9 36 36 H 0.97008 * 119.99873 * 179.97438 * 16 15 13 37 37 H 1.08998 * 109.47543 * 269.98135 * 22 21 12 38 38 H 1.09002 * 109.46468 * 29.98542 * 22 21 12 39 39 H 1.09004 * 109.47029 * 149.97638 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4921 1.4426 0.0006 5 6 4.1014 2.6385 0.0012 6 8 3.4434 3.6518 0.0008 7 6 5.6063 2.7174 0.0013 8 7 6.0217 4.1223 0.0026 9 6 7.3670 4.4460 0.0024 10 6 8.3191 3.4236 0.0068 11 6 9.6472 3.7416 0.0124 12 6 10.0115 5.1070 0.0131 13 6 11.3713 5.4874 0.0194 14 1 11.6609 6.4502 0.4139 15 6 12.3432 4.6174 -0.4853 16 7 11.9872 3.5915 -1.2163 17 14 14.1494 4.9192 -0.1160 18 1 14.5234 4.2132 1.1358 19 1 14.9763 4.4082 -1.2386 20 1 14.3842 6.3763 0.0485 21 6 8.9957 6.0813 0.0085 22 6 9.3599 7.5436 0.0085 23 7 7.7307 5.7226 0.0042 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9564 -0.8899 31 1 5.9961 2.2237 -0.8889 32 1 5.9960 2.2229 0.8912 33 1 5.3536 4.8256 0.0029 34 1 8.0072 2.3895 0.0062 35 1 10.4009 2.9681 0.0163 36 1 12.6613 2.9883 -1.5666 37 1 9.4436 7.8973 1.0361 38 1 10.3133 7.6805 -0.5017 39 1 8.5862 8.1108 -0.5091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162493708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:33 Heat of formation + Delta-G solvation = -82.091442 kcal Electronic energy + Delta-G solvation = -20590.528326 eV Core-core repulsion = 17303.924321 eV Total energy + Delta-G solvation = -3286.604005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.71409 -40.45847 -38.14573 -36.76329 -35.34549 -34.81212 -32.90129 -32.21665 -29.35037 -28.60966 -27.22939 -25.85545 -23.11371 -22.83809 -22.46110 -21.40396 -19.25070 -19.04848 -18.23549 -17.95438 -17.08707 -16.86210 -16.54644 -16.13731 -15.40482 -15.32150 -15.21222 -14.62713 -14.46630 -14.05816 -13.71127 -13.59525 -13.47838 -13.43244 -13.14260 -13.09356 -12.91004 -12.78825 -12.58405 -12.18241 -12.18100 -12.10501 -11.68974 -11.50737 -11.49514 -11.19265 -10.44577 -10.02922 -9.88998 -8.64772 -8.40657 -6.09759 0.88888 0.98230 1.15279 1.33468 1.44746 1.56520 1.59225 2.27219 2.62337 2.84893 3.51276 3.76655 3.89229 3.91273 4.15320 4.25149 4.31735 4.34734 4.50631 4.51520 4.59768 4.69047 4.73459 4.75773 5.01595 5.07067 5.08924 5.16003 5.19235 5.23098 5.39337 5.41200 5.54330 5.64539 5.88264 6.02554 6.42734 6.53742 6.62332 6.82707 6.96761 7.07235 7.86506 8.43544 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035448 B = 0.003010 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.710428 B = 9300.364246 C = 9998.399185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C 0.058 3.942 4 O -0.352 6.352 5 C 0.471 3.529 6 O -0.532 6.532 7 C 0.149 3.851 8 N -0.737 5.737 9 C 0.286 3.714 10 C -0.210 4.210 11 C -0.108 4.108 12 C 0.000 4.000 13 C -0.478 4.478 14 H 0.082 0.918 15 C 0.032 3.968 16 N -0.837 5.837 17 Si 0.980 3.020 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.258 1.258 21 C 0.019 3.981 22 C -0.064 4.064 23 N -0.538 5.538 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.398 0.602 34 H 0.132 0.868 35 H 0.121 0.879 36 H 0.285 0.715 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.323 -8.726 1.921 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.016 4.016 4 O -0.267 6.267 5 C 0.314 3.686 6 O -0.422 6.422 7 C 0.023 3.977 8 N -0.380 5.380 9 C 0.053 3.947 10 C -0.234 4.234 11 C -0.135 4.135 12 C -0.005 4.005 13 C -0.509 4.509 14 H 0.100 0.900 15 C -0.181 4.181 16 N -0.465 5.465 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.182 1.182 21 C -0.119 4.119 22 C -0.122 4.122 23 N -0.255 5.255 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.234 0.766 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.078 -8.192 1.778 16.385 hybrid contribution 0.976 -0.191 -0.047 0.996 sum -13.102 -8.382 1.730 15.650 Atomic orbital electron populations 1.21701 0.92900 1.03452 1.02526 1.21543 0.97044 0.92777 1.04266 1.23450 0.74820 1.00560 1.02724 1.86464 1.24900 1.31873 1.83507 1.23654 0.91997 0.81486 0.71416 1.90650 1.67414 1.37429 1.46699 1.20583 0.86122 0.84863 1.06141 1.43395 1.02961 1.05475 1.86132 1.17828 0.84684 0.89029 1.03175 1.21065 0.93175 0.98598 1.10558 1.21393 0.94790 0.96991 1.00331 1.18551 0.94745 0.92316 0.94890 1.19584 0.91099 1.03338 1.36850 0.89968 1.26680 1.05655 0.93771 0.92012 1.69856 1.37772 1.13659 1.25164 0.85214 0.76121 0.79819 0.78629 1.18975 1.19796 1.18190 1.21263 0.86818 0.96779 1.07088 1.20243 1.00896 0.89759 1.01294 1.66361 1.21184 1.18453 1.19471 0.90328 0.92139 0.92193 0.90313 0.90243 0.91199 0.91275 0.86990 0.86663 0.76585 0.85018 0.86128 0.90411 0.91978 0.91365 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.12 -1.49 6.31 30.59 0.19 -1.30 16 3 C 0.06 1.06 5.47 71.98 0.39 1.45 16 4 O -0.35 -7.97 10.22 -51.38 -0.53 -8.49 16 5 C 0.47 12.82 8.03 71.24 0.57 13.40 16 6 O -0.53 -17.58 15.42 21.99 0.34 -17.24 16 7 C 0.15 4.11 5.46 85.63 0.47 4.58 16 8 N -0.74 -27.52 5.67 -348.58 -1.98 -29.49 16 9 C 0.29 13.01 7.64 133.32 1.02 14.03 16 10 C -0.21 -9.44 9.24 22.23 0.21 -9.23 16 11 C -0.11 -5.56 8.73 22.64 0.20 -5.36 16 12 C 0.00 0.00 5.59 -21.18 -0.12 -0.11 16 13 C -0.48 -24.92 8.16 23.39 0.19 -24.73 16 14 H 0.08 4.09 6.84 -2.91 -0.02 4.07 16 15 C 0.03 1.56 5.22 85.23 0.45 2.01 16 16 N -0.84 -42.70 10.83 21.82 0.24 -42.47 16 17 Si 0.98 37.55 29.58 68.60 2.03 39.58 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 C 0.02 0.96 6.86 43.22 0.30 1.25 16 22 C -0.06 -2.76 9.58 71.24 0.68 -2.08 16 23 N -0.54 -26.86 10.29 -179.37 -1.85 -28.71 16 24 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 1.29 8.13 -2.38 -0.02 1.27 16 30 H 0.07 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.11 2.80 7.91 -2.39 -0.02 2.78 16 32 H 0.12 2.79 7.90 -2.38 -0.02 2.77 16 33 H 0.40 15.45 7.56 -92.70 -0.70 14.75 16 34 H 0.13 4.86 6.64 -2.91 -0.02 4.84 16 35 H 0.12 6.34 6.17 -2.91 -0.02 6.32 16 36 H 0.29 13.23 8.30 -92.70 -0.77 12.46 16 37 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.07 2.88 6.76 -2.39 -0.02 2.87 16 39 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 Total: -1.00 -63.34 330.86 3.88 -59.46 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: 0.37 Total: 34.15 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.26 Total: -6.79 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -3.59 Total: -100.67 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.19 Total: -25.73 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Total: -63.34 3.88 -59.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162493708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.627 kcal (2) G-P(sol) polarization free energy of solvation -63.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds