Wall clock time and date at job start Tue Mar 31 2020 00:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.52265 * 2 1 4 4 C 1.53082 * 109.52438 * 120.13026 * 2 1 3 5 5 O 1.42909 * 109.42521 * 177.50979 * 4 2 1 6 6 C 1.42908 * 114.09643 * 298.85953 * 5 4 2 7 7 C 1.53091 * 109.42368 * 61.13753 * 6 5 4 8 8 C 1.53176 * 109.16580 * 302.39847 * 7 6 5 9 9 H 1.08999 * 109.54308 * 297.11388 * 8 7 6 10 10 N 1.46497 * 109.61733 * 176.89088 * 8 7 6 11 11 C 1.39125 * 120.00187 * 85.39925 * 10 8 7 12 12 C 1.39172 * 119.62689 * 359.72223 * 11 10 8 13 13 C 1.38213 * 119.16631 * 179.77167 * 12 11 10 14 14 C 1.39447 * 118.45120 * 0.49653 * 13 12 11 15 15 O 1.35818 * 120.40604 * 179.72845 * 14 13 12 16 16 C 1.34813 * 116.99855 * 354.54502 * 15 14 13 17 17 H 1.08000 * 119.99527 * 5.05732 * 16 15 14 18 18 C 1.38622 * 120.00043 * 185.06269 * 16 15 14 19 19 N 1.31577 * 119.99951 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00103 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47336 * 359.97438 * 20 18 16 22 22 H 1.48507 * 109.47236 * 119.99831 * 20 18 16 23 23 H 1.48498 * 109.47420 * 239.99567 * 20 18 16 24 24 C 1.38670 * 119.18918 * 359.74944 * 14 13 12 25 25 N 1.31925 * 120.76011 * 359.97438 * 24 14 13 26 26 H 1.08994 * 109.47516 * 299.86849 * 1 2 3 27 27 H 1.09000 * 109.47662 * 59.87102 * 1 2 3 28 28 H 1.09003 * 109.47470 * 179.87093 * 1 2 3 29 29 H 1.08997 * 109.48075 * 297.49680 * 4 2 1 30 30 H 1.09000 * 109.48305 * 57.52411 * 4 2 1 31 31 H 1.09000 * 109.47192 * 301.15449 * 6 5 4 32 32 H 1.08996 * 109.47695 * 181.12741 * 6 5 4 33 33 H 1.08999 * 109.52308 * 182.49025 * 7 6 5 34 34 H 1.09003 * 109.51748 * 62.30244 * 7 6 5 35 35 H 0.96994 * 120.00038 * 265.39868 * 10 8 7 36 36 H 1.07992 * 120.41596 * 0.02562 * 12 11 10 37 37 H 1.08003 * 120.77206 * 180.22311 * 13 12 11 38 38 H 0.97002 * 119.99993 * 180.02562 * 19 18 16 39 39 H 1.08003 * 119.61847 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0416 -0.7242 1.2479 5 8 3.4695 -0.7739 1.2167 6 6 4.0044 -1.4815 0.0963 7 6 3.5715 -0.7877 -1.1979 8 6 2.0418 -0.7259 -1.2481 9 1 1.6367 -1.7374 -1.2734 10 7 1.6180 0.0020 -2.4467 11 6 1.4879 -0.6692 -3.6584 12 6 1.7679 -2.0308 -3.7243 13 6 1.6309 -2.6891 -4.9318 14 6 1.2248 -1.9554 -6.0460 15 8 1.0827 -2.5611 -7.2533 16 6 1.4580 -3.8532 -7.3378 17 1 1.7737 -4.3828 -6.4511 18 6 1.4389 -4.5018 -8.5628 19 7 1.0539 -3.8566 -9.6429 20 14 1.9597 -6.2919 -8.6800 21 1 2.3460 -6.7843 -7.3333 22 1 0.8294 -7.1034 -9.1988 23 1 3.1183 -6.4111 -9.6012 24 6 0.9683 -0.5999 -5.9063 25 7 1.1040 -0.0044 -4.7370 26 1 -0.3634 0.5117 0.8911 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3634 -1.0277 -0.0023 29 1 1.7159 -0.1875 2.1388 30 1 1.6431 -1.7386 1.2685 31 1 3.6316 -2.5058 0.1018 32 1 5.0926 -1.4902 0.1577 33 1 3.9416 -1.3510 -2.0546 34 1 3.9780 0.2235 -1.2226 35 1 1.4281 0.9518 -2.3956 36 1 2.0843 -2.5672 -2.8420 37 1 1.8378 -3.7461 -5.0116 38 1 1.0402 -4.3106 -10.5000 39 1 0.6529 -0.0251 -6.7646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170826862.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:22:37 Heat of formation + Delta-G solvation = -58.303714 kcal Electronic energy + Delta-G solvation = -21453.858706 eV Core-core repulsion = 18168.286215 eV Total energy + Delta-G solvation = -3285.572491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.44442 -40.52663 -38.97658 -36.85205 -34.39332 -33.93547 -32.93527 -32.39336 -29.53313 -27.68334 -27.23600 -25.45450 -24.47046 -23.28015 -22.80737 -21.16269 -19.98049 -19.09264 -17.92235 -17.73087 -17.05486 -16.72568 -16.22543 -16.02946 -15.80143 -15.61908 -15.50910 -15.11914 -14.80357 -14.33536 -14.23599 -14.04434 -13.70129 -13.53291 -13.27617 -12.97717 -12.90465 -12.77887 -12.36457 -12.09493 -12.04814 -11.78154 -11.57993 -11.28740 -10.98564 -10.63817 -10.53441 -10.40483 -10.28178 -8.43012 -8.26732 -6.07998 0.35205 0.72600 1.37691 1.45872 1.55467 2.16944 2.27571 2.89119 2.97302 3.19637 3.52751 3.58322 3.80002 3.82115 3.88664 4.04052 4.08258 4.24423 4.26704 4.34172 4.47632 4.50064 4.61541 4.68292 4.79435 4.86336 4.87768 4.95165 4.96758 5.08369 5.12295 5.22817 5.29467 5.36786 5.49328 5.57546 6.01109 6.25211 6.25875 6.73475 7.01298 7.32146 7.82101 8.80547 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027262 B = 0.003713 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.827019 B = 7539.994764 C = 8145.543029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 H 0.083 0.917 4 C 0.067 3.933 5 O -0.398 6.398 6 C 0.064 3.936 7 C -0.170 4.170 8 C 0.162 3.838 9 H 0.079 0.921 10 N -0.717 5.717 11 C 0.331 3.669 12 C -0.180 4.180 13 C -0.149 4.149 14 C 0.024 3.976 15 O -0.228 6.228 16 C -0.410 4.410 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.017 2.983 21 H -0.249 1.249 22 H -0.270 1.270 23 H -0.271 1.271 24 C 0.065 3.935 25 N -0.514 5.514 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.151 0.849 37 H 0.138 0.862 38 H 0.271 0.729 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.109 3.213 22.418 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 H 0.101 0.899 4 C -0.009 4.009 5 O -0.317 6.317 6 C -0.013 4.013 7 C -0.209 4.209 8 C 0.057 3.943 9 H 0.097 0.903 10 N -0.353 5.353 11 C 0.096 3.904 12 C -0.204 4.204 13 C -0.176 4.176 14 C -0.029 4.029 15 O -0.135 6.135 16 C -0.486 4.486 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.173 1.173 22 H -0.195 1.195 23 H -0.196 1.196 24 C -0.092 4.092 25 N -0.232 5.232 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.169 0.831 37 H 0.155 0.845 38 H 0.080 0.920 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.980 4.085 22.302 22.868 hybrid contribution 0.045 -1.191 -1.101 1.623 sum 3.024 2.894 21.200 21.610 Atomic orbital electron populations 1.21704 0.93367 1.02390 1.02467 1.21991 0.97250 1.00907 0.94142 0.89875 1.22770 0.80166 1.00504 0.97510 1.87923 1.21251 1.76658 1.45845 1.22644 0.99996 0.94751 0.83922 1.22718 0.96572 1.02451 0.99179 1.21040 0.93429 0.96306 0.83553 0.90325 1.44149 1.76125 1.11131 1.03929 1.18306 0.96181 0.89002 0.86934 1.21381 1.07119 0.93669 0.98274 1.21567 1.02577 1.01110 0.92302 1.20603 1.00535 0.94286 0.87479 1.83962 1.75703 1.26882 1.26907 1.21806 1.45830 0.84562 0.96449 0.88114 1.26529 0.96804 1.05287 0.93463 1.70201 1.46712 1.39261 0.99852 0.84548 0.78109 0.74119 0.79557 1.17254 1.19544 1.19610 1.21526 1.03290 0.89552 0.94860 1.67024 1.18916 1.38912 0.98346 0.90646 0.93176 0.92535 0.86857 0.91947 0.91890 0.87642 0.91248 0.91334 0.76289 0.83098 0.84458 0.91964 0.83158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.07 71.98 0.65 -1.39 16 2 C -0.12 -1.85 2.48 -10.71 -0.03 -1.88 16 3 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 4 C 0.07 0.90 6.13 72.01 0.44 1.34 16 5 O -0.40 -6.98 10.77 -148.98 -1.60 -8.58 16 6 C 0.06 0.99 6.84 72.01 0.49 1.49 16 7 C -0.17 -3.18 5.66 30.68 0.17 -3.01 16 8 C 0.16 3.14 1.63 45.11 0.07 3.21 16 9 H 0.08 1.55 6.45 -2.39 -0.02 1.54 16 10 N -0.72 -18.15 4.65 -323.85 -1.51 -19.65 16 11 C 0.33 11.33 7.64 133.04 1.02 12.34 16 12 C -0.18 -6.16 8.88 22.49 0.20 -5.96 16 13 C -0.15 -6.25 9.25 22.56 0.21 -6.05 16 14 C 0.02 1.19 6.67 22.66 0.15 1.34 16 15 O -0.23 -13.51 9.77 -23.32 -0.23 -13.73 16 16 C -0.41 -23.34 9.50 67.91 0.64 -22.70 16 17 H 0.10 5.19 5.25 -2.91 -0.02 5.17 16 18 C -0.02 -1.32 5.49 84.82 0.47 -0.86 16 19 N -0.92 -56.14 13.67 21.61 0.30 -55.84 16 20 Si 1.02 42.10 29.55 68.60 2.03 44.12 16 21 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 C 0.06 2.91 11.14 84.78 0.94 3.85 16 25 N -0.51 -20.49 10.38 -192.67 -2.00 -22.49 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.89 7.69 -2.39 -0.02 0.87 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.47 7.68 -2.39 -0.02 1.45 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.40 9.65 8.70 -92.71 -0.81 8.84 16 36 H 0.15 4.05 6.04 -2.91 -0.02 4.04 16 37 H 0.14 5.65 5.76 -2.91 -0.02 5.63 16 38 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 39 H 0.15 6.54 8.06 -2.91 -0.02 6.51 16 Total: -1.00 -69.36 319.55 2.68 -66.67 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.26 Total: 27.78 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: 5.44 Total: -18.27 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -3.21 Total: -97.99 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -1.83 Total: -22.32 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -69.36 2.68 -66.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826862.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.369 kcal (2) G-P(sol) polarization free energy of solvation -69.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds