Wall clock time and date at job start Tue Mar 31 2020 00:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47617 * 2 1 4 4 C 1.52995 * 109.47276 * 239.99290 * 2 1 3 5 5 C 1.50697 * 109.47053 * 63.06550 * 4 2 1 6 6 C 1.38235 * 119.99795 * 263.21165 * 5 4 2 7 7 C 1.38243 * 119.99608 * 179.76459 * 6 5 4 8 8 C 1.38232 * 120.00224 * 0.50811 * 7 6 5 9 9 N 1.48022 * 120.00011 * 179.72687 * 8 7 6 10 10 O 1.21801 * 119.99716 * 180.02562 * 9 8 7 11 11 O 1.21802 * 119.99875 * 0.02562 * 9 8 7 12 12 C 1.38237 * 119.99833 * 359.74334 * 8 7 6 13 13 C 1.38231 * 120.00174 * 0.02562 * 12 8 7 14 14 N 1.46908 * 109.46716 * 119.99618 * 2 1 3 15 15 C 1.46904 * 110.99933 * 174.30123 * 14 2 1 16 16 C 1.46900 * 111.00120 * 298.25482 * 14 2 1 17 17 C 1.50701 * 109.47058 * 170.00106 * 16 14 2 18 18 H 1.08001 * 120.00086 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99762 * 180.02562 * 17 16 14 20 20 N 1.31510 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47049 * 59.99573 * 21 19 17 23 23 H 1.48497 * 109.47232 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46853 * 300.00021 * 21 19 17 25 25 H 1.08996 * 109.47327 * 300.00524 * 1 2 3 26 26 H 1.09002 * 109.46601 * 59.99895 * 1 2 3 27 27 H 1.08994 * 109.47723 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47281 * 183.06068 * 4 2 1 29 29 H 1.09001 * 109.47247 * 303.06440 * 4 2 1 30 30 H 1.08000 * 120.00381 * 359.97438 * 6 5 4 31 31 H 1.08008 * 119.99671 * 180.23147 * 7 6 5 32 32 H 1.07994 * 119.99880 * 179.97438 * 12 8 7 33 33 H 1.07997 * 120.00048 * 179.97438 * 13 12 8 34 34 H 1.08997 * 109.46863 * 176.59135 * 15 14 2 35 35 H 1.09003 * 109.46913 * 296.59522 * 15 14 2 36 36 H 1.09003 * 109.46938 * 56.59209 * 15 14 2 37 37 H 1.09002 * 109.47160 * 49.99795 * 16 14 2 38 38 H 1.08998 * 109.46753 * 290.00086 * 16 14 2 39 39 H 0.96997 * 120.00590 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6007 0.0314 -2.4785 6 6 0.4646 -0.3621 -3.1606 7 6 0.0589 0.3314 -4.2856 8 6 0.7951 1.4119 -4.7343 9 7 0.3640 2.1508 -5.9423 10 8 1.0130 3.1026 -6.3380 11 8 -0.6397 1.8069 -6.5407 12 6 1.9341 1.8022 -4.0551 13 6 2.3371 1.1117 -2.9275 14 7 2.0196 -0.6925 1.1996 15 6 3.4817 -0.8312 1.1675 16 6 1.5829 -0.0026 2.4208 17 6 1.8879 -0.8628 3.6200 18 1 2.3586 -1.8258 3.4881 19 6 1.5650 -0.4207 4.8855 20 7 0.9914 0.7517 5.0460 21 14 1.9437 -1.4866 6.3720 22 1 3.4056 -1.7375 6.4417 23 1 1.5022 -0.7892 7.6065 24 1 1.2247 -2.7802 6.2496 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1286 -0.7691 -1.2221 29 1 1.6325 -1.7320 -1.2769 30 1 -0.1079 -1.2093 -2.8129 31 1 -0.8308 0.0262 -4.8164 32 1 2.5094 2.6461 -4.4059 33 1 3.2272 1.4164 -2.3971 34 1 3.8233 -1.2926 2.0940 35 1 3.7688 -1.4570 0.3224 36 1 3.9378 0.1532 1.0621 37 1 0.5099 0.1824 2.3697 38 1 2.1113 0.9465 2.5105 39 1 0.7646 1.0629 5.9363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173226614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:33 Heat of formation + Delta-G solvation = 19.736282 kcal Electronic energy + Delta-G solvation = -21031.837401 eV Core-core repulsion = 17749.648977 eV Total energy + Delta-G solvation = -3282.188423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30489 -39.99747 -37.55467 -36.69832 -33.92897 -32.46580 -31.67315 -30.49557 -28.45707 -27.14533 -25.18233 -24.58073 -23.42486 -22.48556 -21.31099 -19.52993 -19.35369 -18.77612 -17.65968 -16.53868 -16.31409 -15.77773 -15.17514 -14.75911 -14.66819 -14.36196 -14.05796 -13.73678 -13.26121 -13.09142 -12.29326 -12.10706 -12.05897 -11.80115 -11.75581 -11.61662 -11.45067 -11.28632 -11.27771 -11.02479 -10.92584 -10.71706 -10.64316 -10.32550 -9.93847 -9.62719 -9.40198 -9.24202 -8.49336 -7.38446 -6.09976 -4.11561 -0.32477 0.72227 1.18890 1.27027 3.04827 3.27858 3.32636 3.34909 4.13989 4.23058 4.27336 4.40274 4.61686 4.73404 4.90164 5.03466 5.14369 5.18701 5.26714 5.40421 5.50697 5.58938 5.65464 5.76168 5.89349 5.94611 6.03745 6.08223 6.14055 6.20759 6.31789 6.41975 6.61083 6.64139 7.20270 7.23833 7.49842 7.70878 7.99544 8.08441 8.44501 8.95483 9.52733 11.00841 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042414 B = 0.003014 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.998914 B = 9287.387085 C = 9389.497889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.088 3.912 3 H 0.032 0.968 4 C -0.090 4.090 5 C -0.010 4.010 6 C -0.114 4.114 7 C -0.052 4.052 8 C -0.058 4.058 9 N 0.032 4.968 10 O -0.168 6.168 11 O -0.167 6.167 12 C -0.051 4.051 13 C -0.118 4.118 14 N -0.535 5.535 15 C 0.031 3.969 16 C 0.190 3.810 17 C -0.510 4.510 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.010 0.990 37 H 0.037 0.963 38 H -0.011 1.011 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.511 -1.088 -16.927 17.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 H 0.050 0.950 4 C -0.127 4.127 5 C -0.011 4.011 6 C -0.133 4.133 7 C -0.072 4.072 8 C -0.141 4.141 9 N 0.550 4.450 10 O -0.382 6.382 11 O -0.382 6.382 12 C -0.070 4.070 13 C -0.137 4.137 14 N -0.260 5.260 15 C -0.117 4.117 16 C 0.065 3.935 17 C -0.548 4.548 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.201 1.201 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.055 0.945 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.434 -1.780 -16.193 16.354 hybrid contribution 0.390 0.633 0.577 0.941 sum 1.824 -1.147 -15.617 15.765 Atomic orbital electron populations 1.21931 0.94607 1.02423 1.01468 1.21469 0.95852 0.94877 0.89882 0.95049 1.21019 1.02022 0.99480 0.90223 1.20557 0.92503 0.93243 0.94772 1.21222 0.96929 1.00943 0.94196 1.21061 0.98817 0.91611 0.95668 1.21089 1.01579 1.00005 0.91437 1.43661 0.99675 1.00022 1.01638 1.94529 1.54381 1.18815 1.70513 1.94527 1.15174 1.71449 1.57039 1.21037 0.93184 0.99174 0.93642 1.21168 1.01377 0.95493 0.95665 1.62204 1.10156 1.51469 1.02201 1.22306 0.88855 0.98611 1.01943 1.19809 0.96336 0.92286 0.85032 1.21111 1.39671 1.03777 0.90264 0.91907 1.24984 0.95298 0.95188 0.99098 1.69936 1.42019 1.18899 1.22940 0.86560 0.78686 0.80441 0.81720 1.20288 1.21335 1.20132 0.91389 0.93528 0.91878 0.89738 0.89252 0.83323 0.83084 0.83132 0.83602 0.90431 0.93343 0.97155 0.94478 0.99306 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.66 37.16 0.32 -1.89 16 2 C 0.09 1.36 2.16 -67.71 -0.15 1.21 16 3 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.09 -1.02 4.53 -27.89 -0.13 -1.15 16 5 C -0.01 -0.10 4.44 -104.62 -0.47 -0.56 16 6 C -0.11 -1.03 8.47 -39.58 -0.34 -1.37 16 7 C -0.05 -0.50 9.56 -39.58 -0.38 -0.88 16 8 C -0.06 -0.65 6.85 -79.95 -0.55 -1.19 16 9 N 0.03 0.42 4.45 33.96 0.15 0.57 16 10 O -0.17 -2.30 18.45 -29.46 -0.54 -2.85 16 11 O -0.17 -2.28 18.45 -29.46 -0.54 -2.82 16 12 C -0.05 -0.50 9.56 -39.58 -0.38 -0.88 16 13 C -0.12 -1.11 9.73 -39.58 -0.39 -1.50 16 14 N -0.54 -10.42 4.62 -236.32 -1.09 -11.52 16 15 C 0.03 0.55 8.80 60.07 0.53 1.07 16 16 C 0.19 4.67 4.56 -4.98 -0.02 4.64 16 17 C -0.51 -13.72 8.41 -34.44 -0.29 -14.01 16 18 H 0.06 1.67 7.15 -52.49 -0.38 1.29 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.99 13.29 55.43 0.74 -25.26 16 21 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.07 1.20 6.24 -51.93 -0.32 0.88 16 26 H 0.05 0.59 6.55 -51.93 -0.34 0.25 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.91 6.21 -51.93 -0.32 0.59 16 29 H 0.09 0.99 8.04 -51.93 -0.42 0.57 16 30 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 31 H 0.15 1.23 7.61 -52.48 -0.40 0.83 16 32 H 0.15 1.27 7.61 -52.49 -0.40 0.87 16 33 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.08 1.50 6.69 -51.93 -0.35 1.15 16 35 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.04 0.97 5.89 -51.93 -0.31 0.66 16 38 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -29.96 326.61 -8.94 -38.90 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.23 Total: -2.89 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.32 Total: -15.06 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.20 Total: -36.20 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -1.09 Total: -5.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.96 -8.94 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173226614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.635 kcal (2) G-P(sol) polarization free energy of solvation -29.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds