Wall clock time and date at job start Tue Mar 31 2020 00:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47617 * 2 1 4 4 C 1.52995 * 109.47276 * 239.99290 * 2 1 3 5 5 C 1.50697 * 109.47053 * 63.06550 * 4 2 1 6 6 C 1.38235 * 119.99795 * 263.21165 * 5 4 2 7 7 C 1.38243 * 119.99608 * 179.76459 * 6 5 4 8 8 C 1.38232 * 120.00224 * 0.50811 * 7 6 5 9 9 N 1.48022 * 120.00011 * 179.72687 * 8 7 6 10 10 O 1.21801 * 119.99716 * 180.02562 * 9 8 7 11 11 O 1.21802 * 119.99875 * 0.02562 * 9 8 7 12 12 C 1.38237 * 119.99833 * 359.74334 * 8 7 6 13 13 C 1.38231 * 120.00174 * 0.02562 * 12 8 7 14 14 N 1.46908 * 109.46716 * 119.99618 * 2 1 3 15 15 C 1.46904 * 110.99933 * 174.30123 * 14 2 1 16 16 C 1.46900 * 111.00120 * 298.25482 * 14 2 1 17 17 C 1.50701 * 109.47058 * 170.00106 * 16 14 2 18 18 H 1.08001 * 120.00086 * 359.97438 * 17 16 14 19 19 C 1.37877 * 119.99762 * 180.02562 * 17 16 14 20 20 N 1.31510 * 120.00298 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99976 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47049 * 59.99573 * 21 19 17 23 23 H 1.48497 * 109.47232 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46853 * 300.00021 * 21 19 17 25 25 H 1.08996 * 109.47327 * 300.00524 * 1 2 3 26 26 H 1.09002 * 109.46601 * 59.99895 * 1 2 3 27 27 H 1.08994 * 109.47723 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47281 * 183.06068 * 4 2 1 29 29 H 1.09001 * 109.47247 * 303.06440 * 4 2 1 30 30 H 1.08000 * 120.00381 * 359.97438 * 6 5 4 31 31 H 1.08008 * 119.99671 * 180.23147 * 7 6 5 32 32 H 1.07994 * 119.99880 * 179.97438 * 12 8 7 33 33 H 1.07997 * 120.00048 * 179.97438 * 13 12 8 34 34 H 1.08997 * 109.46863 * 176.59135 * 15 14 2 35 35 H 1.09003 * 109.46913 * 296.59522 * 15 14 2 36 36 H 1.09003 * 109.46938 * 56.59209 * 15 14 2 37 37 H 1.09002 * 109.47160 * 49.99795 * 16 14 2 38 38 H 1.08998 * 109.46753 * 290.00086 * 16 14 2 39 39 H 0.96997 * 120.00590 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6007 0.0314 -2.4785 6 6 0.4646 -0.3621 -3.1606 7 6 0.0589 0.3314 -4.2856 8 6 0.7951 1.4119 -4.7343 9 7 0.3640 2.1508 -5.9423 10 8 1.0130 3.1026 -6.3380 11 8 -0.6397 1.8069 -6.5407 12 6 1.9341 1.8022 -4.0551 13 6 2.3371 1.1117 -2.9275 14 7 2.0196 -0.6925 1.1996 15 6 3.4817 -0.8312 1.1675 16 6 1.5829 -0.0026 2.4208 17 6 1.8879 -0.8628 3.6200 18 1 2.3586 -1.8258 3.4881 19 6 1.5650 -0.4207 4.8855 20 7 0.9914 0.7517 5.0460 21 14 1.9437 -1.4866 6.3720 22 1 3.4056 -1.7375 6.4417 23 1 1.5022 -0.7892 7.6065 24 1 1.2247 -2.7802 6.2496 25 1 -0.3634 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1286 -0.7691 -1.2221 29 1 1.6325 -1.7320 -1.2769 30 1 -0.1079 -1.2093 -2.8129 31 1 -0.8308 0.0262 -4.8164 32 1 2.5094 2.6461 -4.4059 33 1 3.2272 1.4164 -2.3971 34 1 3.8233 -1.2926 2.0940 35 1 3.7688 -1.4570 0.3224 36 1 3.9378 0.1532 1.0621 37 1 0.5099 0.1824 2.3697 38 1 2.1113 0.9465 2.5105 39 1 0.7646 1.0629 5.9363 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173226614.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:32 Heat of formation + Delta-G solvation = 3.094860 kcal Electronic energy + Delta-G solvation = -21032.559027 eV Core-core repulsion = 17749.648977 eV Total energy + Delta-G solvation = -3282.910049 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.25959 -40.85064 -38.90346 -37.69722 -35.34742 -34.15172 -32.41491 -31.70482 -29.82421 -28.64545 -26.40096 -26.03158 -24.20616 -23.85678 -22.51462 -20.68399 -20.38604 -19.75532 -18.62516 -18.54042 -17.38049 -16.61925 -16.59067 -16.19123 -15.72647 -15.57582 -15.14777 -14.84180 -14.55462 -14.30634 -13.85841 -13.46925 -13.24067 -13.07564 -12.91872 -12.76917 -12.69849 -12.57688 -12.43409 -12.32820 -12.30488 -12.20258 -12.08164 -11.87760 -11.48656 -11.25889 -10.57837 -10.35351 -10.26632 -8.99761 -8.19698 -6.29034 -1.24906 0.00669 0.28314 0.38216 1.41878 1.44157 1.52056 2.27138 2.40810 3.12873 3.20304 3.41012 3.53164 3.72972 3.83087 3.98807 4.06752 4.13546 4.31931 4.43905 4.52442 4.65323 4.73082 4.76268 4.80707 4.86120 4.89088 4.94483 5.06519 5.16335 5.19451 5.26054 5.31677 5.38601 5.40306 5.52929 5.66769 6.08540 6.35639 6.46848 6.67209 6.87986 7.40594 8.91004 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042414 B = 0.003014 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.998914 B = 9287.387085 C = 9389.497889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.021 0.979 4 C -0.076 4.076 5 C -0.013 4.013 6 C -0.108 4.108 7 C -0.052 4.052 8 C -0.072 4.072 9 N 0.033 4.967 10 O -0.188 6.188 11 O -0.181 6.181 12 C -0.053 4.053 13 C -0.116 4.116 14 N -0.541 5.541 15 C 0.032 3.968 16 C 0.205 3.795 17 C -0.522 4.522 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.268 1.268 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.171 0.829 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.011 0.989 37 H 0.016 0.984 38 H -0.045 1.045 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -2.769 -17.513 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 H 0.039 0.961 4 C -0.114 4.114 5 C -0.014 4.014 6 C -0.126 4.126 7 C -0.071 4.071 8 C -0.155 4.155 9 N 0.546 4.454 10 O -0.399 6.399 11 O -0.394 6.394 12 C -0.072 4.072 13 C -0.134 4.134 14 N -0.266 5.266 15 C -0.116 4.116 16 C 0.078 3.922 17 C -0.561 4.561 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.193 1.193 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.114 0.886 29 H 0.119 0.881 30 H 0.188 0.812 31 H 0.182 0.818 32 H 0.178 0.822 33 H 0.179 0.821 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.029 0.971 37 H 0.034 0.966 38 H -0.028 1.028 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.107 -3.458 -16.821 17.302 hybrid contribution 0.188 1.158 0.722 1.378 sum 2.295 -2.299 -16.099 16.423 Atomic orbital electron populations 1.21879 0.94512 1.02605 1.00894 1.21570 0.96005 0.94675 0.90042 0.96095 1.20845 1.02681 0.99494 0.88346 1.20493 0.93041 0.93415 0.94463 1.21445 0.96509 1.01147 0.93501 1.21268 0.99038 0.90974 0.95772 1.21327 1.02579 1.00644 0.90945 1.43967 0.99384 0.99922 1.02085 1.94516 1.54583 1.19606 1.71232 1.94509 1.15587 1.71579 1.57748 1.21199 0.92892 0.99515 0.93598 1.21354 1.01761 0.95016 0.95285 1.62112 1.11597 1.51083 1.01760 1.22340 0.87429 0.99275 1.02535 1.19436 0.94625 0.90877 0.87230 1.21484 1.39203 1.03996 0.91380 0.91719 1.25887 0.95102 0.96413 1.02294 1.70072 1.43286 1.20712 1.23592 0.85485 0.78915 0.78723 0.77804 1.19249 1.21190 1.19258 0.95016 0.90974 0.91265 0.88564 0.88134 0.81179 0.81787 0.82192 0.82073 0.92778 0.89147 0.97075 0.96646 1.02759 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.66 71.98 0.62 -3.50 16 2 C 0.09 2.52 2.16 44.91 0.10 2.62 16 3 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 4 C -0.08 -1.48 4.53 29.85 0.14 -1.35 16 5 C -0.01 -0.22 4.44 -19.87 -0.09 -0.31 16 6 C -0.11 -1.58 8.47 22.27 0.19 -1.40 16 7 C -0.05 -0.86 9.56 22.27 0.21 -0.65 16 8 C -0.07 -1.47 6.85 36.37 0.25 -1.22 16 9 N 0.03 0.83 4.45 -46.46 -0.21 0.63 16 10 O -0.19 -5.11 18.45 18.88 0.35 -4.76 16 11 O -0.18 -4.82 18.45 18.88 0.35 -4.48 16 12 C -0.05 -0.93 9.56 22.27 0.21 -0.72 16 13 C -0.12 -1.85 9.73 22.27 0.22 -1.63 16 14 N -0.54 -20.71 4.62 -901.59 -4.17 -24.88 16 15 C 0.03 1.08 8.80 127.69 1.12 2.20 16 16 C 0.20 10.32 4.56 85.56 0.39 10.71 16 17 C -0.52 -28.45 8.41 25.60 0.22 -28.24 16 18 H 0.06 3.42 7.15 -2.91 -0.02 3.40 16 19 C 0.00 0.05 5.46 84.66 0.46 0.51 16 20 N -0.94 -55.37 13.29 21.45 0.28 -55.08 16 21 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H 0.03 1.14 6.24 -2.39 -0.01 1.12 16 26 H 0.07 1.69 6.55 -2.39 -0.02 1.68 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.10 1.67 6.21 -2.39 -0.01 1.66 16 29 H 0.10 1.80 8.04 -2.39 -0.02 1.78 16 30 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 31 H 0.16 2.27 7.61 -2.91 -0.02 2.25 16 32 H 0.16 2.46 7.61 -2.91 -0.02 2.44 16 33 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.05 2.05 6.69 -2.39 -0.02 2.03 16 35 H 0.09 2.24 6.36 -2.39 -0.02 2.23 16 36 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.02 0.84 5.89 -2.39 -0.01 0.83 16 38 H -0.05 -2.54 8.12 -2.39 -0.02 -2.56 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -66.08 326.61 3.72 -62.35 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: 1.05 Total: 4.07 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 4.04 Total: -22.98 kcal Atomic # 7 Polarization: -75.24 SS G_CDS: -4.09 Total: -79.33 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.70 Total: -9.23 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -66.08 3.72 -62.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173226614.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.448 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds