Wall clock time and date at job start Tue Mar 31 2020 00:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47285 * 2 1 4 4 C 1.53006 * 109.46991 * 119.99859 * 2 1 3 5 5 C 1.50702 * 109.47096 * 295.75756 * 4 2 1 6 6 C 1.38230 * 119.99705 * 276.03689 * 5 4 2 7 7 C 1.38243 * 119.99531 * 179.74124 * 6 5 4 8 8 C 1.38235 * 119.99744 * 0.55464 * 7 6 5 9 9 N 1.48023 * 119.99597 * 179.72373 * 8 7 6 10 10 O 1.21800 * 119.99593 * 179.97438 * 9 8 7 11 11 O 1.21795 * 120.00158 * 359.97214 * 9 8 7 12 12 C 1.38230 * 120.00137 * 359.69700 * 8 7 6 13 13 C 1.38232 * 120.00203 * 0.02562 * 12 8 7 14 14 N 1.46904 * 109.47035 * 239.99382 * 2 1 3 15 15 C 1.46894 * 111.00008 * 187.43231 * 14 2 1 16 16 C 1.46905 * 110.99477 * 63.48187 * 14 2 1 17 17 C 1.50705 * 109.46811 * 189.99597 * 16 14 2 18 18 H 1.08001 * 119.99839 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00002 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00150 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47081 * 60.00351 * 21 19 17 23 23 H 1.48504 * 109.46729 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47138 * 300.00359 * 21 19 17 25 25 H 1.09001 * 109.46659 * 60.00393 * 1 2 3 26 26 H 1.08994 * 109.47028 * 300.00507 * 1 2 3 27 27 H 1.08994 * 109.47285 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47175 * 55.75908 * 4 2 1 29 29 H 1.09004 * 109.47170 * 175.75588 * 4 2 1 30 30 H 1.07991 * 120.00505 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.99632 * 180.27212 * 7 6 5 32 32 H 1.07998 * 119.99961 * 180.02562 * 12 8 7 33 33 H 1.08003 * 120.00226 * 179.97438 * 13 12 8 34 34 H 1.09002 * 109.47254 * 67.38488 * 15 14 2 35 35 H 1.09001 * 109.47447 * 187.38348 * 15 14 2 36 36 H 1.09004 * 109.47558 * 307.38746 * 15 14 2 37 37 H 1.08993 * 109.47062 * 309.99477 * 16 14 2 38 38 H 1.08998 * 109.46864 * 69.99960 * 16 14 2 39 39 H 0.96996 * 120.00155 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6253 0.0473 2.4775 6 6 2.3893 1.1121 2.9171 7 6 2.0059 1.8205 4.0407 8 6 0.8649 1.4567 4.7311 9 7 0.4578 2.2113 5.9377 10 8 -0.5478 1.8911 6.5457 11 8 1.1284 3.1524 6.3225 12 6 0.1039 0.3886 4.2944 13 6 0.4840 -0.3161 3.1676 14 7 2.0197 -0.6926 -1.1994 15 6 3.4773 -0.8678 -1.1480 16 6 1.6178 0.0199 -2.4196 17 6 1.9188 -0.8358 -3.6231 18 1 2.3637 -1.8115 -3.4943 19 6 1.6252 -0.3736 -4.8884 20 7 1.0830 0.8143 -5.0452 21 14 1.9977 -1.4345 -6.3801 22 1 1.2444 -2.7104 -6.2806 23 1 1.5916 -0.7142 -7.6137 24 1 3.4537 -1.7220 -6.4320 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6160 -1.7246 1.2881 29 1 3.1274 -0.7876 1.2121 30 1 3.2831 1.3936 2.3803 31 1 2.6004 2.6551 4.3817 32 1 -0.7878 0.1047 4.8335 33 1 -0.1104 -1.1509 2.8266 34 1 3.7315 -1.5647 -0.3493 35 1 3.8296 -1.2629 -2.1008 36 1 3.9523 0.0942 -0.9556 37 1 0.5491 0.2307 -2.3819 38 1 2.1707 0.9564 -2.4922 39 1 0.8768 1.1396 -5.9354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173226616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:36 Heat of formation + Delta-G solvation = 19.332299 kcal Electronic energy + Delta-G solvation = -21030.790876 eV Core-core repulsion = 17748.584934 eV Total energy + Delta-G solvation = -3282.205941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30672 -39.99767 -37.55591 -36.69967 -33.92673 -32.46653 -31.67531 -30.50154 -28.45210 -27.14682 -25.17657 -24.59330 -23.42430 -22.47622 -21.31132 -19.53166 -19.36321 -18.77780 -17.66088 -16.53325 -16.31403 -15.77786 -15.17897 -14.75996 -14.66954 -14.34804 -14.05624 -13.73779 -13.26909 -13.07895 -12.28992 -12.10743 -12.06604 -11.80472 -11.75937 -11.61960 -11.44584 -11.28695 -11.27549 -11.01940 -10.92972 -10.72229 -10.65113 -10.32392 -9.94575 -9.62808 -9.40428 -9.24469 -8.49678 -7.38369 -6.10094 -4.11709 -0.32527 0.72116 1.18827 1.26954 3.04729 3.27804 3.32582 3.34874 4.13922 4.22979 4.27276 4.40163 4.61637 4.73305 4.90163 5.03524 5.14361 5.18504 5.26517 5.40364 5.50617 5.58832 5.65691 5.76115 5.90152 5.94147 6.03535 6.07333 6.13746 6.21148 6.31679 6.41618 6.61182 6.64315 7.20018 7.23856 7.49813 7.70940 7.99587 8.08456 8.44344 8.95379 9.52610 11.00718 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042309 B = 0.003013 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.636429 B = 9291.808398 C = 9381.246669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.088 3.912 3 H 0.032 0.968 4 C -0.090 4.090 5 C -0.010 4.010 6 C -0.118 4.118 7 C -0.051 4.051 8 C -0.058 4.058 9 N 0.032 4.968 10 O -0.167 6.167 11 O -0.167 6.167 12 C -0.053 4.053 13 C -0.114 4.114 14 N -0.535 5.535 15 C 0.031 3.969 16 C 0.190 3.810 17 C -0.510 4.510 18 H 0.063 0.937 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.149 0.851 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.010 0.990 37 H 0.037 0.963 38 H -0.011 1.011 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -1.217 16.925 17.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 H 0.050 0.950 4 C -0.128 4.128 5 C -0.011 4.011 6 C -0.137 4.137 7 C -0.070 4.070 8 C -0.141 4.141 9 N 0.550 4.450 10 O -0.382 6.382 11 O -0.382 6.382 12 C -0.072 4.072 13 C -0.133 4.133 14 N -0.260 5.260 15 C -0.118 4.118 16 C 0.066 3.934 17 C -0.548 4.548 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.164 0.836 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.167 0.833 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.028 0.972 37 H 0.055 0.945 38 H 0.007 0.993 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.267 -1.908 16.184 16.345 hybrid contribution 0.415 0.633 -0.562 0.943 sum 1.682 -1.274 15.622 15.764 Atomic orbital electron populations 1.21920 0.94610 1.02399 1.01445 1.21481 0.95875 0.94906 0.89812 0.95021 1.21029 1.02226 0.99267 0.90254 1.20557 0.92477 0.93291 0.94778 1.21171 1.01315 0.95430 0.95775 1.21042 0.93338 0.99087 0.93565 1.21090 1.01608 0.99956 0.91449 1.43659 0.99670 1.00032 1.01634 1.94526 1.15274 1.72113 1.56278 1.94528 1.52833 1.19780 1.71087 1.21055 0.98742 0.91616 0.95749 1.21218 0.97071 1.00904 0.94103 1.62206 1.11153 1.50522 1.02142 1.22309 0.88883 0.98339 1.02236 1.19801 0.96456 0.92103 0.85077 1.21111 1.40840 1.02761 0.90122 0.91895 1.24985 0.95309 0.95157 0.99114 1.69938 1.43071 1.17791 1.22980 0.86561 0.78707 0.80388 0.81751 1.20130 1.21334 1.20284 0.91447 0.93510 0.91889 0.89277 0.89710 0.83600 0.83125 0.83086 0.83324 0.93346 0.90341 0.97195 0.94542 0.99303 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.72 37.16 0.32 -1.87 16 2 C 0.09 1.36 2.12 -67.71 -0.14 1.22 16 3 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.09 -1.03 4.50 -27.88 -0.13 -1.16 16 5 C -0.01 -0.10 4.50 -104.62 -0.47 -0.57 16 6 C -0.12 -1.11 9.73 -39.58 -0.38 -1.50 16 7 C -0.05 -0.50 9.56 -39.58 -0.38 -0.88 16 8 C -0.06 -0.65 6.85 -79.95 -0.55 -1.19 16 9 N 0.03 0.42 4.45 33.96 0.15 0.57 16 10 O -0.17 -2.28 18.45 -29.46 -0.54 -2.82 16 11 O -0.17 -2.30 18.45 -29.46 -0.54 -2.85 16 12 C -0.05 -0.50 9.55 -39.59 -0.38 -0.88 16 13 C -0.11 -1.03 8.44 -39.58 -0.33 -1.37 16 14 N -0.54 -10.42 4.62 -236.32 -1.09 -11.52 16 15 C 0.03 0.54 8.66 60.06 0.52 1.06 16 16 C 0.19 4.68 4.57 -4.97 -0.02 4.65 16 17 C -0.51 -13.72 8.35 -34.44 -0.29 -14.01 16 18 H 0.06 1.67 7.20 -52.49 -0.38 1.29 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.99 13.29 55.43 0.74 -25.25 16 21 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H 0.07 1.19 6.29 -51.93 -0.33 0.86 16 26 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 29 H 0.08 0.92 6.21 -51.93 -0.32 0.59 16 30 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.15 1.28 7.61 -52.49 -0.40 0.88 16 32 H 0.15 1.23 7.61 -52.49 -0.40 0.83 16 33 H 0.15 1.09 8.06 -52.48 -0.42 0.66 16 34 H 0.05 0.69 6.58 -51.93 -0.34 0.35 16 35 H 0.08 1.53 6.63 -51.93 -0.34 1.18 16 36 H 0.01 0.16 8.11 -51.93 -0.42 -0.26 16 37 H 0.04 0.95 5.97 -51.93 -0.31 0.64 16 38 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -29.94 326.77 -8.96 -38.90 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.25 Total: -2.89 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -2.33 Total: -15.06 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.20 Total: -36.19 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -1.09 Total: -5.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.94 -8.96 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173226616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.231 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds