Wall clock time and date at job start Tue Mar 31 2020 00:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47285 * 2 1 4 4 C 1.53006 * 109.46991 * 119.99859 * 2 1 3 5 5 C 1.50702 * 109.47096 * 295.75756 * 4 2 1 6 6 C 1.38230 * 119.99705 * 276.03689 * 5 4 2 7 7 C 1.38243 * 119.99531 * 179.74124 * 6 5 4 8 8 C 1.38235 * 119.99744 * 0.55464 * 7 6 5 9 9 N 1.48023 * 119.99597 * 179.72373 * 8 7 6 10 10 O 1.21800 * 119.99593 * 179.97438 * 9 8 7 11 11 O 1.21795 * 120.00158 * 359.97214 * 9 8 7 12 12 C 1.38230 * 120.00137 * 359.69700 * 8 7 6 13 13 C 1.38232 * 120.00203 * 0.02562 * 12 8 7 14 14 N 1.46904 * 109.47035 * 239.99382 * 2 1 3 15 15 C 1.46894 * 111.00008 * 187.43231 * 14 2 1 16 16 C 1.46905 * 110.99477 * 63.48187 * 14 2 1 17 17 C 1.50705 * 109.46811 * 189.99597 * 16 14 2 18 18 H 1.08001 * 119.99839 * 0.02562 * 17 16 14 19 19 C 1.37874 * 120.00002 * 179.97438 * 17 16 14 20 20 N 1.31511 * 120.00150 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47081 * 60.00351 * 21 19 17 23 23 H 1.48504 * 109.46729 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47138 * 300.00359 * 21 19 17 25 25 H 1.09001 * 109.46659 * 60.00393 * 1 2 3 26 26 H 1.08994 * 109.47028 * 300.00507 * 1 2 3 27 27 H 1.08994 * 109.47285 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47175 * 55.75908 * 4 2 1 29 29 H 1.09004 * 109.47170 * 175.75588 * 4 2 1 30 30 H 1.07991 * 120.00505 * 0.02562 * 6 5 4 31 31 H 1.07999 * 119.99632 * 180.27212 * 7 6 5 32 32 H 1.07998 * 119.99961 * 180.02562 * 12 8 7 33 33 H 1.08003 * 120.00226 * 179.97438 * 13 12 8 34 34 H 1.09002 * 109.47254 * 67.38488 * 15 14 2 35 35 H 1.09001 * 109.47447 * 187.38348 * 15 14 2 36 36 H 1.09004 * 109.47558 * 307.38746 * 15 14 2 37 37 H 1.08993 * 109.47062 * 309.99477 * 16 14 2 38 38 H 1.08998 * 109.46864 * 69.99960 * 16 14 2 39 39 H 0.96996 * 120.00155 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6253 0.0473 2.4775 6 6 2.3893 1.1121 2.9171 7 6 2.0059 1.8205 4.0407 8 6 0.8649 1.4567 4.7311 9 7 0.4578 2.2113 5.9377 10 8 -0.5478 1.8911 6.5457 11 8 1.1284 3.1524 6.3225 12 6 0.1039 0.3886 4.2944 13 6 0.4840 -0.3161 3.1676 14 7 2.0197 -0.6926 -1.1994 15 6 3.4773 -0.8678 -1.1480 16 6 1.6178 0.0199 -2.4196 17 6 1.9188 -0.8358 -3.6231 18 1 2.3637 -1.8115 -3.4943 19 6 1.6252 -0.3736 -4.8884 20 7 1.0830 0.8143 -5.0452 21 14 1.9977 -1.4345 -6.3801 22 1 1.2444 -2.7104 -6.2806 23 1 1.5916 -0.7142 -7.6137 24 1 3.4537 -1.7220 -6.4320 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6160 -1.7246 1.2881 29 1 3.1274 -0.7876 1.2121 30 1 3.2831 1.3936 2.3803 31 1 2.6004 2.6551 4.3817 32 1 -0.7878 0.1047 4.8335 33 1 -0.1104 -1.1509 2.8266 34 1 3.7315 -1.5647 -0.3493 35 1 3.8296 -1.2629 -2.1008 36 1 3.9523 0.0942 -0.9556 37 1 0.5491 0.2307 -2.3819 38 1 2.1707 0.9564 -2.4922 39 1 0.8768 1.1396 -5.9354 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173226616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:35 Heat of formation + Delta-G solvation = 2.709924 kcal Electronic energy + Delta-G solvation = -21031.511676 eV Core-core repulsion = 17748.584934 eV Total energy + Delta-G solvation = -3282.926741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.26197 -40.85123 -38.90385 -37.69902 -35.34858 -34.14815 -32.41845 -31.71158 -29.81556 -28.64712 -26.40542 -26.03099 -24.20613 -23.84886 -22.51745 -20.69262 -20.38775 -19.75703 -18.62672 -18.53575 -17.38113 -16.62042 -16.58849 -16.19529 -15.72715 -15.56331 -15.15135 -14.83799 -14.54142 -14.30995 -13.86781 -13.46805 -13.23734 -13.07634 -12.91520 -12.77012 -12.69927 -12.57366 -12.43482 -12.32919 -12.30178 -12.20207 -12.07692 -11.88942 -11.50059 -11.26032 -10.58157 -10.35537 -10.26910 -8.99458 -8.19749 -6.29110 -1.25000 0.00460 0.28190 0.38077 1.41890 1.44202 1.52089 2.26961 2.40779 3.12829 3.20307 3.40866 3.52997 3.73054 3.83059 3.98635 4.06826 4.13701 4.31771 4.43958 4.52426 4.65131 4.72997 4.76378 4.80836 4.85850 4.89171 4.94267 5.06952 5.16241 5.19672 5.26092 5.31601 5.38084 5.40520 5.52723 5.66783 6.08613 6.35749 6.46784 6.67214 6.87927 7.40534 8.90956 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.042309 B = 0.003013 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.636429 B = 9291.808398 C = 9381.246669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.020 0.980 4 C -0.077 4.077 5 C -0.013 4.013 6 C -0.116 4.116 7 C -0.053 4.053 8 C -0.072 4.072 9 N 0.033 4.967 10 O -0.180 6.180 11 O -0.188 6.188 12 C -0.051 4.051 13 C -0.108 4.108 14 N -0.541 5.541 15 C 0.032 3.968 16 C 0.205 3.795 17 C -0.522 4.522 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.936 5.936 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.267 1.267 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.160 0.840 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.089 0.911 35 H 0.053 0.947 36 H 0.013 0.987 37 H 0.014 0.986 38 H -0.045 1.045 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.959 -2.938 17.511 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.038 0.962 4 C -0.114 4.114 5 C -0.014 4.014 6 C -0.134 4.134 7 C -0.072 4.072 8 C -0.155 4.155 9 N 0.546 4.454 10 O -0.394 6.394 11 O -0.400 6.400 12 C -0.070 4.070 13 C -0.126 4.126 14 N -0.266 5.266 15 C -0.116 4.116 16 C 0.079 3.921 17 C -0.560 4.560 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.192 1.192 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.119 0.881 29 H 0.114 0.886 30 H 0.179 0.821 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.107 0.893 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.032 0.968 38 H -0.027 1.027 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.878 -3.626 16.811 17.300 hybrid contribution 0.232 1.170 -0.708 1.387 sum 2.110 -2.456 16.104 16.426 Atomic orbital electron populations 1.21872 0.94460 1.02617 1.00891 1.21580 0.96068 0.94652 0.89991 0.96155 1.20857 1.02853 0.99317 0.88376 1.20495 0.93035 0.93436 0.94477 1.21353 1.01714 0.94952 0.95413 1.21202 0.93072 0.99425 0.93516 1.21327 1.02627 1.00574 0.90961 1.43964 0.99370 0.99943 1.02078 1.94508 1.15660 1.72244 1.56983 1.94515 1.53041 1.20593 1.71805 1.21265 0.98947 0.90963 0.95864 1.21444 0.96683 1.01070 0.93392 1.62118 1.12648 1.50057 1.01736 1.22342 0.87444 0.99421 1.02423 1.19426 0.94606 0.90806 0.87288 1.21482 1.40349 1.02983 0.91235 0.91705 1.25889 0.95109 0.96363 1.02336 1.70074 1.44346 1.19605 1.23636 0.85485 0.78956 0.78678 0.77804 1.19265 1.21193 1.19232 0.95065 0.90933 0.91227 0.88088 0.88605 0.82119 0.82204 0.81764 0.81139 0.89274 0.92821 0.96811 0.96771 1.02733 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 8.72 71.98 0.63 -3.46 16 2 C 0.09 2.52 2.12 44.92 0.10 2.62 16 3 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 4 C -0.08 -1.49 4.50 29.85 0.13 -1.36 16 5 C -0.01 -0.23 4.50 -19.87 -0.09 -0.31 16 6 C -0.12 -1.87 9.73 22.27 0.22 -1.65 16 7 C -0.05 -0.94 9.56 22.27 0.21 -0.73 16 8 C -0.07 -1.47 6.85 36.37 0.25 -1.22 16 9 N 0.03 0.83 4.45 -46.46 -0.21 0.63 16 10 O -0.18 -4.81 18.45 18.89 0.35 -4.46 16 11 O -0.19 -5.12 18.45 18.89 0.35 -4.77 16 12 C -0.05 -0.85 9.55 22.27 0.21 -0.64 16 13 C -0.11 -1.58 8.44 22.27 0.19 -1.39 16 14 N -0.54 -20.72 4.62 -901.59 -4.17 -24.88 16 15 C 0.03 1.06 8.66 127.69 1.11 2.16 16 16 C 0.20 10.35 4.57 85.56 0.39 10.74 16 17 C -0.52 -28.43 8.35 25.60 0.21 -28.22 16 18 H 0.06 3.43 7.20 -2.91 -0.02 3.41 16 19 C 0.00 0.05 5.46 84.65 0.46 0.51 16 20 N -0.94 -55.36 13.29 21.45 0.28 -55.08 16 21 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 24 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 25 H 0.03 1.12 6.29 -2.39 -0.01 1.10 16 26 H 0.07 1.69 6.56 -2.39 -0.02 1.67 16 27 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.10 1.79 8.04 -2.39 -0.02 1.77 16 29 H 0.10 1.68 6.21 -2.38 -0.01 1.67 16 30 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.16 2.48 7.61 -2.91 -0.02 2.45 16 32 H 0.16 2.26 7.61 -2.91 -0.02 2.24 16 33 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.09 2.23 6.58 -2.39 -0.02 2.22 16 35 H 0.05 2.05 6.63 -2.39 -0.02 2.03 16 36 H 0.01 0.43 8.11 -2.39 -0.02 0.42 16 37 H 0.01 0.78 5.97 -2.39 -0.01 0.76 16 38 H -0.04 -2.52 8.12 -2.39 -0.02 -2.54 16 39 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -66.05 326.77 3.71 -62.34 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: 1.05 Total: 4.09 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.02 Total: -22.96 kcal Atomic # 7 Polarization: -75.25 SS G_CDS: -4.09 Total: -79.34 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.70 Total: -9.23 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -66.05 3.71 -62.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173226616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.050 kcal (2) G-P(sol) polarization free energy of solvation -66.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds