Wall clock time and date at job start Tue Mar 31 2020 00:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47337 * 2 1 4 4 C 1.50693 * 109.47122 * 120.00735 * 2 1 3 5 5 H 1.08006 * 120.00276 * 114.28070 * 4 2 1 6 6 C 1.37882 * 120.00261 * 294.27866 * 4 2 1 7 7 N 1.31509 * 120.00395 * 159.15739 * 6 4 2 8 8 Si 1.86805 * 119.99339 * 339.42892 * 6 4 2 9 9 H 1.48503 * 109.46621 * 179.72312 * 8 6 4 10 10 H 1.48498 * 109.47502 * 299.72506 * 8 6 4 11 11 H 1.48497 * 109.47011 * 59.72994 * 8 6 4 12 12 N 1.46500 * 109.47006 * 240.00742 * 2 1 3 13 13 C 1.46502 * 119.99796 * 299.99897 * 12 2 1 14 14 C 1.34781 * 120.00176 * 119.99966 * 12 2 1 15 15 O 1.21579 * 119.99772 * 0.02562 * 14 12 2 16 16 N 1.34783 * 120.00001 * 179.97438 * 14 12 2 17 17 C 1.39935 * 119.99834 * 185.04675 * 16 14 12 18 18 C 1.38866 * 120.07146 * 212.34045 * 17 16 14 19 19 C 1.38117 * 119.93085 * 179.77097 * 18 17 16 20 20 C 1.38274 * 120.06791 * 0.51186 * 19 18 17 21 21 C 1.50703 * 119.92752 * 179.72550 * 20 19 18 22 22 O 1.42905 * 109.46964 * 270.01754 * 21 20 19 23 23 C 1.38282 * 120.14382 * 359.74185 * 20 19 18 24 24 C 1.38114 * 120.06671 * 0.02562 * 23 20 19 25 25 H 1.09005 * 109.46821 * 54.14332 * 1 2 3 26 26 H 1.08998 * 109.47060 * 174.14379 * 1 2 3 27 27 H 1.08996 * 109.47030 * 294.14501 * 1 2 3 28 28 H 0.97006 * 119.99457 * 355.21235 * 7 6 4 29 29 H 1.09008 * 109.47126 * 90.00359 * 13 12 2 30 30 H 1.09006 * 109.46949 * 210.00012 * 13 12 2 31 31 H 1.08991 * 109.47362 * 329.99952 * 13 12 2 32 32 H 0.97003 * 119.99492 * 5.05451 * 16 14 12 33 33 H 1.07999 * 120.03222 * 359.97438 * 18 17 16 34 34 H 1.07996 * 119.96477 * 180.25397 * 19 18 17 35 35 H 1.08999 * 109.47431 * 30.01734 * 21 20 19 36 36 H 1.09007 * 109.47013 * 150.02282 * 21 20 19 37 37 H 0.96693 * 114.00146 * 179.97438 * 22 21 20 38 38 H 1.07994 * 119.96597 * 179.97438 * 23 20 19 39 39 H 1.08000 * 120.03249 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.5750 -1.6394 1.1338 6 6 1.7992 -0.1749 2.4793 7 7 1.8534 -0.9435 3.5450 8 14 1.3991 1.6411 2.6567 9 1 1.1863 1.9632 4.0907 10 1 2.5271 2.4504 2.1296 11 1 0.1656 1.9533 1.8911 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0930 -1.4282 14 6 2.7932 -0.0354 -2.0834 15 8 3.0873 1.1285 -1.8906 16 7 3.2428 -0.6708 -3.1837 17 6 4.1321 -0.0253 -4.0501 18 6 4.0968 -0.2956 -5.4117 19 6 4.9727 0.3467 -6.2648 20 6 5.8913 1.2502 -5.7630 21 6 6.8497 1.9447 -6.6959 22 8 8.0413 1.1658 -6.8210 23 6 5.9327 1.5177 -4.4069 24 6 5.0562 0.8823 -3.5492 25 1 -0.3633 0.6020 -0.8330 26 1 -0.3633 -1.0223 -0.1049 27 1 -0.3633 0.4203 0.9377 28 1 1.9883 -1.8992 3.4473 29 1 0.7374 -2.1442 -1.9996 30 1 2.4628 -2.5817 -1.9867 31 1 1.5295 -2.5968 -0.4712 32 1 2.9498 -1.5755 -3.3750 33 1 3.3828 -1.0049 -5.8036 34 1 4.9429 0.1400 -7.3244 35 1 6.3853 2.0581 -7.6755 36 1 7.0985 2.9276 -6.2956 37 1 8.7045 1.5531 -7.4084 38 1 6.6515 2.2236 -4.0180 39 1 5.0893 1.0913 -2.4902 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263649231.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:49 Heat of formation + Delta-G solvation = -67.429090 kcal Electronic energy + Delta-G solvation = -21403.232160 eV Core-core repulsion = 18117.263962 eV Total energy + Delta-G solvation = -3285.968197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.81176 -40.06076 -37.85330 -37.17589 -35.86676 -34.77480 -32.34149 -31.91276 -30.89797 -27.84694 -26.88673 -26.40567 -24.09321 -23.38567 -21.97146 -20.78213 -19.58495 -19.38800 -18.31800 -18.28230 -17.16904 -16.77213 -16.57246 -16.16032 -15.56639 -15.15297 -15.06351 -14.74209 -14.63455 -14.37534 -14.12697 -14.07020 -13.75707 -13.64620 -13.42239 -13.22794 -13.03509 -12.44682 -12.25206 -12.19958 -11.90414 -11.69201 -11.38151 -11.24230 -11.06876 -10.90537 -10.50335 -9.88660 -9.64661 -9.03631 -8.71630 -6.40320 0.23706 0.45301 1.42336 1.49998 1.60753 1.71451 2.04854 2.42118 2.77908 2.93343 2.99081 3.65158 3.87782 4.03035 4.18295 4.21710 4.29117 4.43876 4.46031 4.53212 4.55819 4.67097 4.70308 4.73819 4.75979 4.84742 5.04587 5.11336 5.21720 5.27801 5.39876 5.54725 5.62274 5.66744 5.76729 6.00286 6.06454 6.09398 6.55526 6.92583 6.97558 7.29397 7.49573 8.58159 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029132 B = 0.003894 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.901196 B = 7188.997348 C = 7640.176818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.251 3.749 3 H 0.031 0.969 4 C -0.612 4.612 5 H 0.033 0.967 6 C -0.001 4.001 7 N -0.925 5.925 8 Si 1.066 2.934 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.241 1.241 12 N -0.608 5.608 13 C 0.080 3.920 14 C 0.692 3.308 15 O -0.622 6.622 16 N -0.676 5.676 17 C 0.159 3.841 18 C -0.149 4.149 19 C -0.076 4.076 20 C -0.127 4.127 21 C 0.123 3.877 22 O -0.591 6.591 23 C -0.089 4.089 24 C -0.154 4.154 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.258 0.742 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.420 0.580 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.399 0.601 38 H 0.129 0.871 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 1.275 -23.925 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.147 3.853 3 H 0.049 0.951 4 C -0.650 4.650 5 H 0.052 0.948 6 C -0.203 4.203 7 N -0.560 5.560 8 Si 0.889 3.111 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.165 1.165 12 N -0.342 5.342 13 C -0.062 4.062 14 C 0.394 3.606 15 O -0.503 6.503 16 N -0.326 5.326 17 C 0.064 3.936 18 C -0.169 4.169 19 C -0.095 4.095 20 C -0.128 4.128 21 C 0.046 3.954 22 O -0.400 6.400 23 C -0.107 4.107 24 C -0.175 4.175 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.260 0.740 33 H 0.174 0.826 34 H 0.176 0.824 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.147 0.853 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.996 2.823 -22.162 22.695 hybrid contribution 0.666 -1.597 -0.593 1.829 sum 4.662 1.226 -22.755 23.260 Atomic orbital electron populations 1.22302 0.96246 1.01539 1.00620 1.18857 0.91887 0.93033 0.81495 0.95097 1.22292 1.40186 1.09944 0.92595 0.94824 1.26753 0.93246 1.08513 0.91741 1.70962 1.46488 1.06329 1.32219 0.83780 0.78778 0.71892 0.76692 1.20590 1.21020 1.16541 1.47236 1.51623 1.13124 1.22184 1.21795 1.01186 0.80554 1.02680 1.16133 0.79388 0.84552 0.80510 1.90839 1.64022 1.17394 1.78002 1.42647 1.47696 1.18867 1.23405 1.17873 0.89908 0.95802 0.90019 1.21115 1.02410 1.03868 0.89525 1.21172 0.93527 0.93942 1.00824 1.19940 0.98824 1.00310 0.93716 1.20970 0.84304 0.92505 0.97631 1.86526 1.29275 1.52100 1.72085 1.21048 0.97512 0.98981 0.93208 1.21173 0.96127 0.99972 1.00259 0.93458 0.92119 0.92579 0.93266 0.90412 0.90157 0.91669 0.74010 0.82646 0.82367 0.90281 0.91955 0.75076 0.85275 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.24 8.99 71.98 0.65 -5.59 16 2 C 0.25 12.22 2.23 44.24 0.10 12.32 16 3 H 0.03 1.68 5.50 -2.39 -0.01 1.67 16 4 C -0.61 -34.41 8.32 25.60 0.21 -34.19 16 5 H 0.03 2.04 7.37 -2.91 -0.02 2.02 16 6 C 0.00 -0.09 5.25 84.66 0.44 0.36 16 7 N -0.93 -56.83 13.70 21.45 0.29 -56.53 16 8 Si 1.07 51.55 26.38 68.60 1.81 53.36 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.24 -10.33 5.95 99.48 0.59 -9.73 16 12 N -0.61 -25.24 2.75 -844.84 -2.33 -27.56 16 13 C 0.08 2.49 9.03 127.77 1.15 3.65 16 14 C 0.69 28.96 8.03 179.05 1.44 30.40 16 15 O -0.62 -31.19 13.30 -3.97 -0.05 -31.24 16 16 N -0.68 -21.31 5.18 -317.18 -1.64 -22.95 16 17 C 0.16 4.91 6.29 38.15 0.24 5.16 16 18 C -0.15 -3.34 9.96 22.39 0.22 -3.12 16 19 C -0.08 -1.53 9.69 22.25 0.22 -1.32 16 20 C -0.13 -2.89 5.51 -19.84 -0.11 -3.00 16 21 C 0.12 1.91 7.17 71.24 0.51 2.42 16 22 O -0.59 -9.91 13.64 -148.98 -2.03 -11.95 16 23 C -0.09 -2.52 9.69 22.25 0.22 -2.31 16 24 C -0.15 -5.39 8.66 22.39 0.19 -5.20 16 25 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.06 2.34 7.48 -2.39 -0.02 2.32 16 27 H 0.06 2.43 5.20 -2.39 -0.01 2.42 16 28 H 0.26 15.87 8.73 -92.70 -0.81 15.06 16 29 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 30 H 0.08 1.96 6.44 -2.38 -0.02 1.95 16 31 H 0.06 2.33 6.91 -2.39 -0.02 2.31 16 32 H 0.42 9.89 6.62 -92.71 -0.61 9.28 16 33 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.08 0.81 8.08 -2.39 -0.02 0.80 16 36 H 0.06 0.85 8.08 -2.38 -0.02 0.83 16 37 H 0.40 2.45 9.12 -74.06 -0.68 1.77 16 38 H 0.13 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.10 4.32 6.35 -2.91 -0.02 4.30 16 Total: -1.00 -77.91 320.28 1.18 -76.73 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -0.36 Total: 20.56 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.48 Total: -0.41 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -3.67 Total: -107.05 kcal Atomic # 8 Polarization: -41.10 SS G_CDS: -2.09 Total: -43.19 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 1.81 Total: 53.36 kcal Total: -77.91 1.18 -76.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263649231.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.306 kcal (2) G-P(sol) polarization free energy of solvation -77.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds