Wall clock time and date at job start Tue Mar 31 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47415 * 2 1 4 4 C 1.50698 * 109.47061 * 239.99832 * 2 1 3 5 5 H 1.08000 * 120.00135 * 240.00159 * 4 2 1 6 6 C 1.37873 * 119.99910 * 60.00242 * 4 2 1 7 7 N 1.31520 * 120.00029 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00183 * 359.97438 * 6 4 2 9 9 H 1.48492 * 109.47299 * 269.99998 * 8 6 4 10 10 H 1.48504 * 109.46868 * 30.00250 * 8 6 4 11 11 H 1.48506 * 109.47247 * 149.99720 * 8 6 4 12 12 N 1.46502 * 109.47098 * 120.00280 * 2 1 3 13 13 C 1.46498 * 120.00018 * 59.99637 * 12 2 1 14 14 C 1.34775 * 119.99703 * 240.00047 * 12 2 1 15 15 O 1.21581 * 120.00507 * 359.97438 * 14 12 2 16 16 N 1.34786 * 119.99731 * 179.97438 * 14 12 2 17 17 C 1.39941 * 119.99699 * 175.40674 * 16 14 12 18 18 C 1.38868 * 120.07067 * 214.81558 * 17 16 14 19 19 C 1.38113 * 119.92814 * 179.77511 * 18 17 16 20 20 C 1.38276 * 120.07213 * 0.50561 * 19 18 17 21 21 C 1.50708 * 119.93329 * 179.72553 * 20 19 18 22 22 O 1.42899 * 109.46827 * 270.02138 * 21 20 19 23 23 C 1.38282 * 120.13894 * 359.74608 * 20 19 18 24 24 C 1.38117 * 120.07199 * 359.97438 * 23 20 19 25 25 H 1.08999 * 109.47415 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47157 * 300.00062 * 1 2 3 27 27 H 1.09002 * 109.47305 * 59.99980 * 1 2 3 28 28 H 0.96999 * 119.99794 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47049 * 90.00398 * 13 12 2 30 30 H 1.09005 * 109.47077 * 210.00299 * 13 12 2 31 31 H 1.09001 * 109.47565 * 329.99986 * 13 12 2 32 32 H 0.96993 * 119.99795 * 355.41372 * 16 14 12 33 33 H 1.07995 * 120.03114 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.96571 * 180.24813 * 19 18 17 35 35 H 1.09003 * 109.46412 * 30.02248 * 21 20 19 36 36 H 1.08999 * 109.47254 * 150.02030 * 21 20 19 37 37 H 0.96706 * 113.99513 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.96610 * 180.02562 * 23 20 19 39 39 H 1.08001 * 120.03615 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 2.1380 -0.8591 -3.5565 8 14 0.6247 1.2790 -2.6541 9 1 -0.8028 0.8727 -2.6998 10 1 0.8471 2.1765 -1.4920 11 1 0.9759 1.9951 -3.9068 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0357 2.0833 15 8 3.0872 1.1282 1.8908 16 7 3.2420 -0.6710 3.1841 17 6 4.1239 -0.0221 4.0556 18 6 5.1154 -0.7440 4.7069 19 6 5.9872 -0.0999 5.5629 20 6 5.8669 1.2605 5.7796 21 6 6.8160 1.9591 6.7191 22 8 6.2758 1.9417 8.0419 23 6 4.8774 1.9812 5.1366 24 6 4.0061 1.3440 4.2749 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9033 -0.5279 -4.4375 29 1 2.4156 -2.7377 0.9717 30 1 1.6236 -2.2853 2.5002 31 1 0.6903 -2.3003 0.9846 32 1 2.9538 -1.5778 3.3720 33 1 5.2067 -1.8074 4.5419 34 1 6.7610 -0.6600 6.0667 35 1 7.7775 1.4455 6.7123 36 1 6.9531 2.9911 6.3961 37 1 6.8355 2.3747 8.7010 38 1 4.7863 3.0437 5.3076 39 1 3.2332 1.9074 3.7733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263649232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:53 Heat of formation + Delta-G solvation = -31.556109 kcal Electronic energy + Delta-G solvation = -21378.996668 eV Core-core repulsion = 18094.584040 eV Total energy + Delta-G solvation = -3284.412628 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.40716 -38.86874 -36.87800 -35.69430 -34.47197 -32.74041 -30.89810 -30.82573 -29.66390 -26.45442 -25.54391 -25.07308 -22.91098 -22.13220 -20.75654 -19.22974 -18.01595 -17.62155 -17.13544 -16.47556 -15.85866 -15.59802 -15.42926 -14.70122 -14.39712 -13.97799 -13.80948 -13.40111 -13.20155 -13.07445 -12.97353 -12.68155 -12.35066 -12.25683 -11.89299 -11.66832 -11.29414 -11.22840 -11.14519 -10.69912 -10.26675 -10.16224 -10.08451 -9.67098 -9.46958 -9.29474 -8.79640 -8.65119 -8.05984 -7.66894 -6.16107 -4.16975 1.32720 1.52939 3.03927 3.22291 3.36360 3.38961 3.51657 3.89267 4.32199 4.33824 4.38824 4.80223 4.90770 5.10509 5.16026 5.16685 5.24759 5.44317 5.48761 5.69452 5.80018 5.87742 6.06005 6.13603 6.20936 6.29194 6.34322 6.39467 6.49227 6.64894 6.71685 6.81705 6.85593 7.20580 7.29462 7.40059 7.50396 7.60572 8.32120 8.47059 8.84740 9.03367 9.44673 10.96698 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.003721 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.578679 B = 7524.016041 C = 7783.640713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.245 3.755 3 H 0.065 0.935 4 C -0.529 4.529 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.598 5.598 13 C 0.087 3.913 14 C 0.700 3.300 15 O -0.579 6.579 16 N -0.694 5.694 17 C 0.186 3.814 18 C -0.158 4.158 19 C -0.080 4.080 20 C -0.125 4.125 21 C 0.122 3.878 22 O -0.569 6.569 23 C -0.080 4.080 24 C -0.125 4.125 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.052 0.948 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.404 0.596 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.376 0.624 38 H 0.122 0.878 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 0.701 19.710 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.142 3.858 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.096 0.904 6 C -0.127 4.127 7 N -0.532 5.532 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.187 1.187 11 H -0.221 1.221 12 N -0.332 5.332 13 C -0.057 4.057 14 C 0.402 3.598 15 O -0.457 6.457 16 N -0.343 5.343 17 C 0.090 3.910 18 C -0.179 4.179 19 C -0.099 4.099 20 C -0.126 4.126 21 C 0.045 3.955 22 O -0.375 6.375 23 C -0.099 4.099 24 C -0.145 4.145 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.241 0.759 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.223 0.777 38 H 0.140 0.860 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.652 1.183 18.924 19.523 hybrid contribution -0.257 0.360 -0.073 0.448 sum 4.395 1.543 18.850 19.418 Atomic orbital electron populations 1.22484 0.99107 1.01094 0.99380 1.19239 0.89746 0.95002 0.81762 0.91739 1.21166 1.32736 1.14307 0.88481 0.90369 1.24859 0.95688 0.96593 0.95586 1.69876 1.45168 1.40219 0.97982 0.86915 0.80373 0.83831 0.77573 1.20382 1.18730 1.22101 1.47182 1.51108 1.11742 1.23182 1.21556 1.02453 0.83022 0.98683 1.15907 0.79491 0.84997 0.79420 1.90858 1.62373 1.15335 1.77106 1.42931 1.48805 1.18715 1.23875 1.17628 0.90133 0.92425 0.90845 1.20835 0.95471 1.00213 1.01339 1.20699 0.98429 0.93511 0.97273 1.19482 0.99128 0.94158 0.99822 1.20930 0.94181 0.98626 0.81786 1.86596 1.50715 1.82012 1.18128 1.20914 0.93868 0.99692 0.95403 1.21398 1.01203 0.93832 0.98080 0.92515 0.94716 0.93000 0.92406 0.92627 0.93412 0.90253 0.75889 0.85735 0.85992 0.93014 0.92932 0.77727 0.85990 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.45 8.65 37.15 0.32 -3.13 16 2 C 0.24 5.87 2.23 -69.08 -0.15 5.72 16 3 H 0.06 1.73 5.96 -51.93 -0.31 1.42 16 4 C -0.53 -14.58 8.95 -34.44 -0.31 -14.89 16 5 H 0.08 2.33 7.89 -52.49 -0.41 1.91 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 8 Si 0.88 21.75 24.37 -169.99 -4.14 17.61 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.11 16 10 H -0.26 -6.39 6.53 56.52 0.37 -6.02 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 N -0.60 -12.22 2.75 -181.01 -0.50 -12.72 16 13 C 0.09 1.36 9.48 59.85 0.57 1.93 16 14 C 0.70 14.28 8.13 -86.91 -0.71 13.57 16 15 O -0.58 -13.82 13.10 5.29 0.07 -13.75 16 16 N -0.69 -11.02 5.22 -14.22 -0.07 -11.10 16 17 C 0.19 2.90 6.30 -83.69 -0.53 2.37 16 18 C -0.16 -2.04 9.97 -39.39 -0.39 -2.44 16 19 C -0.08 -0.97 9.69 -39.61 -0.38 -1.35 16 20 C -0.12 -1.56 5.51 -104.59 -0.58 -2.14 16 21 C 0.12 1.15 7.17 36.01 0.26 1.41 16 22 O -0.57 -5.52 13.64 -35.23 -0.48 -6.00 16 23 C -0.08 -1.11 9.69 -39.61 -0.38 -1.49 16 24 C -0.12 -2.03 8.70 -39.39 -0.34 -2.37 16 25 H 0.06 1.11 6.66 -51.93 -0.35 0.76 16 26 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 1.15 3.27 -51.93 -0.17 0.98 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 31 H 0.08 1.23 6.43 -51.93 -0.33 0.90 16 32 H 0.40 5.06 6.52 -40.82 -0.27 4.79 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.05 0.40 8.08 -51.93 -0.42 -0.02 16 36 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 37 H 0.38 1.68 9.12 45.56 0.42 2.09 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.14 2.62 6.22 -52.49 -0.33 2.29 16 LS Contribution 316.76 15.07 4.77 4.77 Total: -1.00 -34.65 316.76 -6.52 -41.16 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -4.21 Total: 6.93 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.72 Total: -0.76 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.20 Total: -49.97 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.41 Total: -19.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.14 Total: 17.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.65 -6.52 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263649232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.607 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds