Wall clock time and date at job start Tue Mar 31 2020 00:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47415 * 2 1 4 4 C 1.50698 * 109.47061 * 239.99832 * 2 1 3 5 5 H 1.08000 * 120.00135 * 240.00159 * 4 2 1 6 6 C 1.37873 * 119.99910 * 60.00242 * 4 2 1 7 7 N 1.31520 * 120.00029 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00183 * 359.97438 * 6 4 2 9 9 H 1.48492 * 109.47299 * 269.99998 * 8 6 4 10 10 H 1.48504 * 109.46868 * 30.00250 * 8 6 4 11 11 H 1.48506 * 109.47247 * 149.99720 * 8 6 4 12 12 N 1.46502 * 109.47098 * 120.00280 * 2 1 3 13 13 C 1.46498 * 120.00018 * 59.99637 * 12 2 1 14 14 C 1.34775 * 119.99703 * 240.00047 * 12 2 1 15 15 O 1.21581 * 120.00507 * 359.97438 * 14 12 2 16 16 N 1.34786 * 119.99731 * 179.97438 * 14 12 2 17 17 C 1.39941 * 119.99699 * 175.40674 * 16 14 12 18 18 C 1.38868 * 120.07067 * 214.81558 * 17 16 14 19 19 C 1.38113 * 119.92814 * 179.77511 * 18 17 16 20 20 C 1.38276 * 120.07213 * 0.50561 * 19 18 17 21 21 C 1.50708 * 119.93329 * 179.72553 * 20 19 18 22 22 O 1.42899 * 109.46827 * 270.02138 * 21 20 19 23 23 C 1.38282 * 120.13894 * 359.74608 * 20 19 18 24 24 C 1.38117 * 120.07199 * 359.97438 * 23 20 19 25 25 H 1.08999 * 109.47415 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47157 * 300.00062 * 1 2 3 27 27 H 1.09002 * 109.47305 * 59.99980 * 1 2 3 28 28 H 0.96999 * 119.99794 * 179.97438 * 7 6 4 29 29 H 1.08996 * 109.47049 * 90.00398 * 13 12 2 30 30 H 1.09005 * 109.47077 * 210.00299 * 13 12 2 31 31 H 1.09001 * 109.47565 * 329.99986 * 13 12 2 32 32 H 0.96993 * 119.99795 * 355.41372 * 16 14 12 33 33 H 1.07995 * 120.03114 * 359.97438 * 18 17 16 34 34 H 1.08002 * 119.96571 * 180.24813 * 19 18 17 35 35 H 1.09003 * 109.46412 * 30.02248 * 21 20 19 36 36 H 1.08999 * 109.47254 * 150.02030 * 21 20 19 37 37 H 0.96706 * 113.99513 * 179.97438 * 22 21 20 38 38 H 1.08002 * 119.96610 * 180.02562 * 23 20 19 39 39 H 1.08001 * 120.03615 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 2.1380 -0.8591 -3.5565 8 14 0.6247 1.2790 -2.6541 9 1 -0.8028 0.8727 -2.6998 10 1 0.8471 2.1765 -1.4920 11 1 0.9759 1.9951 -3.9068 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0357 2.0833 15 8 3.0872 1.1282 1.8908 16 7 3.2420 -0.6710 3.1841 17 6 4.1239 -0.0221 4.0556 18 6 5.1154 -0.7440 4.7069 19 6 5.9872 -0.0999 5.5629 20 6 5.8669 1.2605 5.7796 21 6 6.8160 1.9591 6.7191 22 8 6.2758 1.9417 8.0419 23 6 4.8774 1.9812 5.1366 24 6 4.0061 1.3440 4.2749 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.9033 -0.5279 -4.4375 29 1 2.4156 -2.7377 0.9717 30 1 1.6236 -2.2853 2.5002 31 1 0.6903 -2.3003 0.9846 32 1 2.9538 -1.5778 3.3720 33 1 5.2067 -1.8074 4.5419 34 1 6.7610 -0.6600 6.0667 35 1 7.7775 1.4455 6.7123 36 1 6.9531 2.9911 6.3961 37 1 6.8355 2.3747 8.7010 38 1 4.7863 3.0437 5.3076 39 1 3.2332 1.9074 3.7733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263649232.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:44:52 Heat of formation + Delta-G solvation = -58.180885 kcal Electronic energy + Delta-G solvation = -21380.151205 eV Core-core repulsion = 18094.584040 eV Total energy + Delta-G solvation = -3285.567165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.79122 -40.04640 -37.85922 -37.17748 -35.84326 -34.68135 -32.48556 -31.88834 -30.94059 -27.84282 -27.17383 -26.46549 -24.07508 -23.51910 -22.01663 -20.77473 -19.47723 -18.81087 -18.29072 -18.16869 -17.34397 -16.92910 -16.52972 -16.19872 -15.98250 -15.11679 -14.97559 -14.76191 -14.69321 -14.37809 -14.13229 -14.03922 -13.91188 -13.59203 -13.55024 -13.10571 -13.05356 -12.57142 -12.24218 -12.18101 -12.05471 -11.58525 -11.40779 -11.30094 -11.00484 -10.88769 -10.80370 -9.85916 -9.56709 -8.98170 -8.35885 -6.40650 0.25902 0.47840 1.26091 1.36096 1.44750 1.61444 2.08440 2.27363 2.79111 2.94350 3.00509 3.65548 3.90407 4.05385 4.22472 4.24258 4.31311 4.40730 4.47877 4.52347 4.56512 4.58093 4.68040 4.69702 4.79636 4.90739 5.04429 5.08172 5.19760 5.29756 5.40763 5.46470 5.57841 5.64070 5.68952 5.96300 6.09123 6.30394 6.61306 6.95086 6.97868 7.23318 7.51110 8.80315 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.003721 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.578679 B = 7524.016041 C = 7783.640713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.248 3.752 3 H 0.032 0.968 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.941 3.059 9 H -0.251 1.251 10 H -0.262 1.262 11 H -0.296 1.296 12 N -0.606 5.606 13 C 0.082 3.918 14 C 0.694 3.306 15 O -0.622 6.622 16 N -0.676 5.676 17 C 0.156 3.844 18 C -0.150 4.150 19 C -0.080 4.080 20 C -0.126 4.126 21 C 0.123 3.877 22 O -0.589 6.589 23 C -0.091 4.091 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.269 0.731 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.420 0.580 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.399 0.601 38 H 0.132 0.868 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 0.258 22.208 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.145 3.855 3 H 0.050 0.950 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.175 4.175 7 N -0.579 5.579 8 Si 0.768 3.232 9 H -0.176 1.176 10 H -0.187 1.187 11 H -0.223 1.223 12 N -0.340 5.340 13 C -0.060 4.060 14 C 0.396 3.604 15 O -0.503 6.503 16 N -0.326 5.326 17 C 0.060 3.940 18 C -0.171 4.171 19 C -0.098 4.098 20 C -0.127 4.127 21 C 0.046 3.954 22 O -0.398 6.398 23 C -0.110 4.110 24 C -0.170 4.170 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.260 0.740 33 H 0.169 0.831 34 H 0.173 0.827 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.150 0.850 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.859 0.696 21.493 22.047 hybrid contribution -0.159 0.464 -0.712 0.865 sum 4.700 1.160 20.781 21.338 Atomic orbital electron populations 1.22334 0.96424 1.02483 1.00016 1.18888 0.91699 0.93127 0.81831 0.94983 1.21372 1.31795 1.13179 0.90248 0.93752 1.25639 0.97168 0.99487 0.95253 1.70003 1.47099 1.42201 0.98619 0.85976 0.79949 0.80116 0.77137 1.17643 1.18704 1.22339 1.47118 1.51339 1.13374 1.22182 1.21800 1.02283 0.80180 1.01747 1.16097 0.79316 0.84648 0.80314 1.90828 1.63825 1.17380 1.78276 1.42602 1.48415 1.19088 1.22497 1.17881 0.91521 0.92559 0.91999 1.21140 0.94232 1.01421 1.00279 1.21149 0.98574 0.93578 0.96539 1.19951 0.98569 0.94701 0.99494 1.20960 0.93964 0.99254 0.81243 1.86521 1.52061 1.82618 1.18643 1.21093 0.94085 1.00475 0.95300 1.21304 1.01755 0.94509 0.99433 0.90784 0.92516 0.93793 0.92217 0.93251 0.88865 0.89862 0.73967 0.83088 0.82698 0.90590 0.91867 0.75084 0.84988 0.86853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.34 8.65 71.98 0.62 -5.71 16 2 C 0.25 12.03 2.23 44.24 0.10 12.12 16 3 H 0.03 1.77 5.96 -2.39 -0.01 1.76 16 4 C -0.53 -29.82 8.95 25.60 0.23 -29.59 16 5 H 0.04 2.74 7.89 -2.91 -0.02 2.72 16 6 C 0.02 1.35 5.45 84.65 0.46 1.81 16 7 N -0.94 -57.91 13.96 21.45 0.30 -57.61 16 8 Si 0.94 45.17 24.37 68.60 1.67 46.85 16 9 H -0.25 -10.96 6.87 99.48 0.68 -10.28 16 10 H -0.26 -12.49 6.53 99.48 0.65 -11.84 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 12 N -0.61 -24.77 2.75 -844.86 -2.33 -27.09 16 13 C 0.08 2.47 9.48 127.77 1.21 3.68 16 14 C 0.69 28.70 8.13 179.05 1.45 30.15 16 15 O -0.62 -30.94 13.10 -3.97 -0.05 -30.99 16 16 N -0.68 -21.02 5.22 -317.17 -1.65 -22.67 16 17 C 0.16 4.77 6.30 38.15 0.24 5.01 16 18 C -0.15 -3.53 9.97 22.39 0.22 -3.31 16 19 C -0.08 -1.68 9.69 22.25 0.22 -1.46 16 20 C -0.13 -2.88 5.51 -19.84 -0.11 -2.99 16 21 C 0.12 1.93 7.17 71.24 0.51 2.44 16 22 O -0.59 -9.65 13.64 -148.98 -2.03 -11.68 16 23 C -0.09 -2.49 9.69 22.25 0.22 -2.28 16 24 C -0.15 -4.98 8.70 22.39 0.19 -4.79 16 25 H 0.07 2.74 6.66 -2.39 -0.02 2.73 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.04 1.86 3.27 -2.39 -0.01 1.86 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.92 6.30 -2.38 -0.02 1.90 16 31 H 0.08 2.44 6.43 -2.39 -0.02 2.43 16 32 H 0.42 9.70 6.52 -92.71 -0.60 9.10 16 33 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 34 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 36 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 37 H 0.40 2.31 9.12 -74.05 -0.68 1.63 16 38 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 39 H 0.11 4.42 6.22 -2.91 -0.02 4.41 16 Total: -1.00 -78.46 316.76 1.21 -77.26 By element: Atomic # 1 Polarization: 21.14 SS G_CDS: -0.27 Total: 20.87 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 5.57 Total: 5.08 kcal Atomic # 7 Polarization: -103.70 SS G_CDS: -3.68 Total: -107.38 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -2.08 Total: -42.68 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.85 kcal Total: -78.46 1.21 -77.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263649232.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.075 kcal (2) G-P(sol) polarization free energy of solvation -78.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds