Wall clock time and date at job start Tue Mar 31 2020 00:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47159 * 2 1 4 4 C 1.53001 * 109.47241 * 119.99922 * 2 1 3 5 5 C 1.50703 * 109.46597 * 294.99940 * 4 2 1 6 6 O 1.21272 * 120.00493 * 0.02562 * 5 4 2 7 7 N 1.34779 * 119.99751 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00376 * 179.97438 * 7 5 4 9 9 C 1.53496 * 114.20904 * 155.00161 * 8 7 5 10 10 N 1.47062 * 87.98485 * 87.72044 * 9 8 7 11 11 C 1.36939 * 136.05593 * 207.08750 * 10 9 8 12 12 H 1.08008 * 119.99868 * 7.82597 * 11 10 9 13 13 C 1.38808 * 120.00203 * 187.82575 * 11 10 9 14 14 N 1.31618 * 119.99998 * 195.17052 * 13 11 10 15 15 Si 1.86797 * 119.99840 * 15.16580 * 13 11 10 16 16 H 1.48503 * 109.47450 * 270.00422 * 15 13 11 17 17 H 1.48503 * 109.47360 * 30.00092 * 15 13 11 18 18 H 1.48498 * 109.47360 * 150.00270 * 15 13 11 19 19 C 1.47059 * 87.88616 * 27.34176 * 10 9 8 20 20 C 1.50698 * 109.47482 * 239.99874 * 2 1 3 21 21 C 1.34511 * 125.79171 * 119.71113 * 20 2 1 22 22 C 1.41385 * 106.84185 * 179.89176 * 21 20 2 23 23 C 1.34518 * 106.83915 * 0.37699 * 22 21 20 24 24 O 1.34303 * 108.42084 * 359.76898 * 23 22 21 25 25 H 1.08996 * 109.46999 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47444 * 300.00396 * 1 2 3 27 27 H 1.09007 * 109.47047 * 59.99920 * 1 2 3 28 28 H 1.08998 * 109.47235 * 175.00279 * 4 2 1 29 29 H 1.08997 * 109.46730 * 54.99696 * 4 2 1 30 30 H 0.97007 * 119.99743 * 359.97438 * 7 5 4 31 31 H 1.09003 * 113.27537 * 21.93512 * 8 7 5 32 32 H 1.09008 * 113.46447 * 332.93478 * 9 8 7 33 33 H 1.08996 * 113.51824 * 202.51288 * 9 8 7 34 34 H 0.96995 * 120.00365 * 354.90363 * 14 13 11 35 35 H 1.08997 * 113.47135 * 87.43718 * 19 10 9 36 36 H 1.09007 * 113.47198 * 217.88025 * 19 10 9 37 37 H 1.08001 * 126.58157 * 0.03551 * 21 20 2 38 38 H 1.08000 * 126.57893 * 180.16210 * 22 21 20 39 39 H 1.07996 * 125.79078 * 179.74739 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4765 6 8 1.0109 1.0870 2.3632 7 7 1.9844 -0.3917 3.7002 8 6 1.5974 0.3652 4.8933 9 6 1.4919 -0.4816 6.1692 10 7 2.9255 -0.2372 6.3877 11 6 3.9528 -0.8908 7.0144 12 1 3.8045 -1.8907 7.3949 13 6 5.1848 -0.2682 7.1607 14 7 6.2461 -0.9769 7.4827 15 14 5.3364 1.5753 6.9004 16 1 5.6456 1.8502 5.4742 17 1 4.0562 2.2337 7.2650 18 1 6.4278 2.1078 7.7551 19 6 2.7689 1.0209 5.6426 20 6 2.0324 -0.7104 -1.2304 21 6 2.8045 -0.1704 -2.1904 22 6 3.0379 -1.1848 -3.1472 23 6 2.3874 -2.2816 -2.7189 24 8 1.7802 -1.9884 -1.5574 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7994 1.2056 29 1 1.6053 -1.7197 1.2952 30 1 2.4877 -1.2160 3.7908 31 1 0.7490 1.0289 4.7259 32 1 1.2541 -1.5280 5.9772 33 1 0.8544 -0.0382 6.9340 34 1 6.1550 -1.9200 7.6900 35 1 2.4681 1.8613 6.2681 36 1 3.6193 1.2548 5.0019 37 1 3.1769 0.8428 -2.2228 38 1 3.6229 -1.0952 -4.0506 39 1 2.3582 -3.2360 -3.2236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267666616.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:43 Heat of formation + Delta-G solvation = 11.166374 kcal Electronic energy + Delta-G solvation = -21308.923102 eV Core-core repulsion = 18026.363059 eV Total energy + Delta-G solvation = -3282.560042 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.48127 -41.24023 -39.66134 -36.11318 -35.06501 -34.05367 -33.80746 -30.33207 -29.54787 -28.57808 -26.93170 -24.80184 -23.77640 -22.66369 -21.77658 -21.10039 -20.71137 -19.49302 -18.52637 -17.80991 -17.30738 -16.91137 -16.67585 -16.48744 -15.81823 -15.47863 -15.45564 -15.22411 -14.97840 -14.24941 -14.02830 -13.70392 -13.65610 -13.48746 -13.37136 -13.20164 -12.76876 -12.44699 -12.28344 -12.26481 -11.96250 -11.93901 -11.60358 -11.27997 -10.90875 -10.81994 -10.77622 -9.91909 -9.35790 -9.24858 -8.59823 -5.45121 0.83315 1.40031 1.48718 1.61144 1.65042 1.73196 2.07881 2.25431 2.52556 3.02588 3.17765 3.57140 3.63897 3.72864 4.00867 4.06572 4.17227 4.32228 4.33923 4.40071 4.44031 4.64829 4.66298 4.69593 4.72634 4.78955 4.89913 4.93908 5.00017 5.07276 5.16100 5.21362 5.21665 5.39670 5.63610 5.64004 5.97003 6.25304 6.58965 6.71276 7.24092 7.34477 8.28712 8.91678 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.003850 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.524017 B = 7270.183689 C = 7737.785659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.012 3.988 3 H 0.102 0.898 4 C -0.132 4.132 5 C 0.520 3.480 6 O -0.568 6.568 7 N -0.698 5.698 8 C 0.122 3.878 9 C 0.112 3.888 10 N -0.651 5.651 11 C -0.286 4.286 12 H 0.055 0.945 13 C -0.080 4.080 14 N -0.970 5.970 15 Si 1.098 2.902 16 H -0.286 1.286 17 H -0.254 1.254 18 H -0.305 1.305 19 C 0.078 3.922 20 C -0.017 4.017 21 C -0.224 4.224 22 C -0.228 4.228 23 C -0.045 4.045 24 O -0.187 6.187 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.409 0.591 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.248 0.752 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.011 -0.161 -20.573 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.006 4.006 3 H 0.120 0.880 4 C -0.171 4.171 5 C 0.308 3.692 6 O -0.447 6.447 7 N -0.347 5.347 8 C 0.015 3.985 9 C -0.014 4.014 10 N -0.380 5.380 11 C -0.414 4.414 12 H 0.072 0.928 13 C -0.273 4.273 14 N -0.616 5.616 15 Si 0.925 3.075 16 H -0.213 1.213 17 H -0.179 1.179 18 H -0.233 1.233 19 C -0.048 4.048 20 C -0.067 4.067 21 C -0.243 4.243 22 C -0.247 4.247 23 C -0.112 4.112 24 O -0.084 6.084 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.122 0.878 29 H 0.131 0.869 30 H 0.245 0.755 31 H 0.140 0.860 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.059 0.941 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -11.411 1.474 -20.403 23.424 hybrid contribution -0.109 -1.853 0.532 1.931 sum -11.520 -0.379 -19.871 22.972 Atomic orbital electron populations 1.21897 0.92962 1.02336 1.03144 1.19429 0.97185 0.97698 0.86332 0.87970 1.21741 1.04001 1.00766 0.90617 1.20891 0.78213 0.85295 0.84780 1.90632 1.41521 1.25695 1.86895 1.45600 1.56799 1.27490 1.04858 1.22182 0.96934 0.94632 0.84714 1.22936 0.85419 0.99191 0.93827 1.46385 1.05224 1.21942 1.64468 1.19990 0.90641 0.96878 1.33910 0.92756 1.26861 0.91030 1.09381 1.00012 1.71004 1.29448 1.08841 1.52285 0.83324 0.75988 0.71906 0.76262 1.21294 1.17897 1.23294 1.23423 0.97304 0.90779 0.93299 1.22470 1.02167 0.82845 0.99199 1.21925 1.03980 1.02088 0.96270 1.22158 1.06038 0.93449 1.03032 1.24772 0.98059 1.02131 0.86245 1.83995 1.59944 1.28139 1.36297 0.92328 0.90960 0.92045 0.87790 0.86859 0.75527 0.85972 0.92373 0.91202 0.94272 0.91594 0.94134 0.82821 0.81660 0.74854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.92 71.98 0.64 -2.39 16 2 C 0.01 0.26 2.44 -11.54 -0.03 0.23 16 3 H 0.10 2.27 7.91 -2.38 -0.02 2.25 16 4 C -0.13 -2.82 5.16 29.85 0.15 -2.66 16 5 C 0.52 14.23 7.55 87.66 0.66 14.89 16 6 O -0.57 -18.14 13.56 -3.01 -0.04 -18.18 16 7 N -0.70 -20.44 5.40 -441.53 -2.39 -22.83 16 8 C 0.12 3.90 4.61 45.55 0.21 4.11 16 9 C 0.11 3.87 8.44 83.17 0.70 4.57 16 10 N -0.65 -29.72 3.62 -738.12 -2.67 -32.40 16 11 C -0.29 -16.08 11.03 84.03 0.93 -15.15 16 12 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 13 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 14 N -0.97 -62.06 13.70 21.65 0.30 -61.76 16 15 Si 1.10 53.59 25.50 68.60 1.75 55.34 16 16 H -0.29 -13.40 6.97 99.48 0.69 -12.71 16 17 H -0.25 -11.09 5.66 99.48 0.56 -10.53 16 18 H -0.30 -15.21 7.11 99.48 0.71 -14.51 16 19 C 0.08 3.08 5.44 83.26 0.45 3.53 16 20 C -0.02 -0.36 5.83 24.83 0.14 -0.21 16 21 C -0.22 -4.50 10.78 22.19 0.24 -4.26 16 22 C -0.23 -3.87 10.91 22.19 0.24 -3.63 16 23 C -0.05 -0.71 12.09 66.97 0.81 0.10 16 24 O -0.19 -3.89 10.65 -2.53 -0.03 -3.92 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.73 5.95 -2.39 -0.01 1.72 16 27 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.41 11.79 8.76 -92.70 -0.81 10.98 16 31 H 0.12 3.54 7.45 -2.39 -0.02 3.52 16 32 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.25 15.85 8.73 -92.71 -0.81 15.04 16 35 H 0.07 2.48 7.02 -2.39 -0.02 2.46 16 36 H 0.04 1.72 6.22 -2.38 -0.01 1.71 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.24 1.70 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -71.36 324.00 2.59 -68.77 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.05 Total: 20.10 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 5.62 Total: -5.13 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -4.76 Total: -116.98 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.07 Total: -22.10 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 1.75 Total: 55.34 kcal Total: -71.36 2.59 -68.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267666616.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.941 kcal (2) G-P(sol) polarization free energy of solvation -71.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds