Wall clock time and date at job start Tue Mar 31 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35915 * 116.99609 * 2 1 4 4 C 1.38844 * 119.98648 * 359.72545 * 3 2 1 5 5 C 1.38243 * 120.23967 * 179.76415 * 4 3 2 6 6 C 1.38015 * 120.20396 * 0.51246 * 5 4 3 7 7 C 1.39556 * 119.96341 * 359.74144 * 6 5 4 8 8 C 1.47868 * 120.11730 * 179.97438 * 7 6 5 9 9 O 1.21551 * 119.99758 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99602 * 0.02581 * 8 7 6 11 11 C 1.46500 * 119.99450 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.47201 * 324.99719 * 11 10 8 13 13 C 1.52999 * 109.47302 * 84.99960 * 11 10 8 14 14 C 1.53003 * 109.46984 * 204.99901 * 11 10 8 15 15 N 1.46500 * 109.47189 * 54.99618 * 14 11 10 16 16 C 1.36937 * 119.99981 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99837 * 0.02562 * 16 15 14 18 18 C 1.38814 * 119.99535 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99338 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00430 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47146 * 89.99858 * 20 18 16 22 22 H 1.48499 * 109.47294 * 210.00136 * 20 18 16 23 23 H 1.48498 * 109.47288 * 330.00089 * 20 18 16 24 24 C 1.38455 * 119.98141 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47144 * 59.99798 * 1 2 3 26 26 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47352 * 299.99773 * 1 2 3 28 28 H 1.08001 * 119.88049 * 0.02562 * 4 3 2 29 29 H 1.07998 * 119.90515 * 180.25555 * 5 4 3 30 30 H 1.07997 * 120.01777 * 179.72508 * 6 5 4 31 31 H 0.96994 * 120.00181 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47295 * 59.99378 * 13 11 10 33 33 H 1.08996 * 109.47309 * 179.97438 * 13 11 10 34 34 H 1.09003 * 109.47135 * 299.99693 * 13 11 10 35 35 H 1.08996 * 109.47273 * 175.00503 * 14 11 10 36 36 H 1.09007 * 109.47117 * 295.00310 * 14 11 10 37 37 H 0.97004 * 119.99602 * 0.02562 * 15 14 11 38 38 H 0.96996 * 119.99717 * 180.02562 * 19 18 16 39 39 H 1.08002 * 120.10165 * 359.96227 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2894 2.3753 -0.0058 5 6 1.9115 3.6098 -0.0009 6 6 3.2891 3.6932 -0.0009 7 6 4.0579 2.5284 -0.0004 8 6 5.5341 2.6138 -0.0010 9 8 6.2015 1.5979 -0.0011 10 7 6.1394 3.8180 -0.0015 11 6 7.6020 3.9025 -0.0027 12 1 8.0137 3.0831 0.5865 13 6 8.1173 3.8064 -1.4401 14 6 8.0361 5.2371 0.6066 15 7 7.4436 5.3816 1.9386 16 6 7.6928 6.5053 2.6806 17 1 8.3258 7.2851 2.2836 18 6 7.1318 6.6419 3.9429 19 7 7.3710 7.7222 4.6559 20 14 6.0364 5.2934 4.6292 21 1 6.8660 4.3140 5.3761 22 1 5.0309 5.8903 5.5446 23 1 5.3416 4.6039 3.5126 24 6 3.4286 1.2832 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 0.2110 2.3162 -0.0098 29 1 1.3177 4.5119 -0.0012 30 1 3.7719 4.6592 -0.0016 31 1 5.6067 4.6286 -0.0018 32 1 7.7054 4.6258 -2.0293 33 1 9.2054 3.8697 -1.4410 34 1 7.8080 2.8555 -1.8741 35 1 9.1228 5.2633 0.6874 36 1 7.6995 6.0544 -0.0313 37 1 6.8748 4.6813 2.2950 38 1 6.9793 7.8175 5.5381 39 1 4.0182 0.3783 0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275417334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:20 Heat of formation + Delta-G solvation = -57.615920 kcal Electronic energy + Delta-G solvation = -21325.035536 eV Core-core repulsion = 18039.492869 eV Total energy + Delta-G solvation = -3285.542666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56727 -40.56404 -38.31006 -37.70666 -35.57661 -33.49432 -32.54066 -31.96144 -30.69409 -28.19037 -27.64710 -25.19411 -24.02253 -23.49306 -22.28706 -21.44304 -20.01883 -19.39922 -17.76847 -17.40485 -17.14610 -16.75005 -16.67641 -16.66153 -16.00836 -15.84334 -15.28945 -14.85648 -14.77188 -14.50835 -14.23801 -13.92855 -13.75354 -13.56751 -13.22743 -13.18099 -12.92208 -12.83021 -12.62113 -12.21093 -12.06771 -11.98606 -11.90082 -11.75147 -11.15256 -11.00446 -10.29388 -10.02453 -9.33816 -9.33216 -8.04734 -5.37778 -0.28058 0.32915 1.33761 1.37543 1.42737 1.75628 1.95404 2.41723 2.44504 2.77159 3.27868 3.49076 3.64440 3.74714 3.89522 4.01394 4.10264 4.21243 4.25413 4.39012 4.40365 4.42532 4.47155 4.72544 4.77805 4.83030 4.85575 4.92254 5.07125 5.15285 5.22839 5.28907 5.31190 5.46961 5.58627 5.75124 6.19232 6.34820 6.45736 7.04879 7.09912 7.80580 7.98413 9.16595 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.004996 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.439990 B = 5602.890631 C = 6699.880968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.111 3.889 4 C -0.175 4.175 5 C -0.081 4.081 6 C -0.126 4.126 7 C -0.112 4.112 8 C 0.554 3.446 9 O -0.577 6.577 10 N -0.704 5.704 11 C 0.135 3.865 12 H 0.069 0.931 13 C -0.147 4.147 14 C 0.148 3.852 15 N -0.759 5.759 16 C -0.230 4.230 17 H 0.066 0.934 18 C -0.054 4.054 19 N -0.979 5.979 20 Si 0.943 3.057 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.256 1.256 24 C -0.117 4.117 25 H 0.072 0.928 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.166 0.834 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.411 0.589 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.363 0.637 38 H 0.258 0.742 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.057 -11.769 -14.527 24.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.194 4.194 5 C -0.099 4.099 6 C -0.145 4.145 7 C -0.115 4.115 8 C 0.343 3.657 9 O -0.458 6.458 10 N -0.355 5.355 11 C 0.031 3.969 12 H 0.087 0.913 13 C -0.206 4.206 14 C 0.022 3.978 15 N -0.405 5.405 16 C -0.361 4.361 17 H 0.084 0.916 18 C -0.246 4.246 19 N -0.630 5.630 20 Si 0.771 3.229 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.181 1.181 24 C -0.137 4.137 25 H 0.090 0.910 26 H 0.136 0.864 27 H 0.086 0.914 28 H 0.183 0.817 29 H 0.184 0.816 30 H 0.160 0.840 31 H 0.249 0.751 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.196 0.804 38 H 0.067 0.933 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.380 -12.447 -14.507 24.534 hybrid contribution -0.644 -0.151 1.008 1.206 sum -16.023 -12.598 -13.499 24.447 Atomic orbital electron populations 1.23419 0.75915 1.05816 1.02676 1.86080 1.23919 1.26392 1.88701 1.18921 0.91489 0.85603 0.97372 1.21803 1.01846 0.91359 1.04390 1.21318 0.93686 0.98689 0.96214 1.21529 0.95159 0.97371 1.00462 1.19665 0.92023 0.94522 1.05286 1.18551 0.88096 0.83431 0.75667 1.90720 1.66971 1.36091 1.52005 1.45955 1.07967 1.08166 1.73427 1.21245 0.79380 0.97964 0.98350 0.91303 1.22009 1.02464 1.02356 0.93753 1.21149 0.97249 0.94416 0.85010 1.42740 1.59762 1.20990 1.16971 1.19055 1.23827 0.96237 0.96986 0.91596 1.25337 1.02463 0.99321 0.97496 1.69853 1.50653 1.29674 1.12806 0.85592 0.79260 0.79369 0.78634 1.21593 1.21736 1.18089 1.20419 0.92503 0.97621 1.03160 0.90965 0.86408 0.91405 0.81688 0.81629 0.84037 0.75148 0.90692 0.89813 0.92927 0.93427 0.93334 0.80394 0.93289 0.85777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.28 16 2 O -0.34 -7.11 10.49 -92.59 -0.97 -8.08 16 3 C 0.11 2.58 6.68 22.47 0.15 2.73 16 4 C -0.18 -3.03 9.03 22.42 0.20 -2.83 16 5 C -0.08 -1.44 10.03 22.22 0.22 -1.21 16 6 C -0.13 -2.89 9.54 22.54 0.21 -2.68 16 7 C -0.11 -3.22 5.87 -20.10 -0.12 -3.34 16 8 C 0.55 18.51 7.74 86.79 0.67 19.18 16 9 O -0.58 -22.93 16.01 -3.87 -0.06 -22.99 16 10 N -0.70 -21.31 4.47 -445.39 -1.99 -23.30 16 11 C 0.14 4.18 2.73 44.99 0.12 4.31 16 12 H 0.07 2.44 7.58 -2.39 -0.02 2.42 16 13 C -0.15 -3.58 9.48 71.98 0.68 -2.89 16 14 C 0.15 5.24 5.82 86.38 0.50 5.74 16 15 N -0.76 -34.52 5.24 -343.44 -1.80 -36.32 16 16 C -0.23 -12.79 10.47 84.03 0.88 -11.91 16 17 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 18 C -0.05 -3.16 5.50 84.86 0.47 -2.69 16 19 N -0.98 -61.93 13.97 21.65 0.30 -61.63 16 20 Si 0.94 46.08 27.74 68.60 1.90 47.99 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 23 H -0.26 -11.47 6.52 99.48 0.65 -10.82 16 24 C -0.12 -3.35 9.53 22.63 0.22 -3.14 16 25 H 0.07 0.52 7.64 -2.39 -0.02 0.51 16 26 H 0.12 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.07 0.56 7.67 -2.39 -0.02 0.54 16 28 H 0.17 1.66 6.28 -2.91 -0.02 1.64 16 29 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.14 2.86 6.40 -2.91 -0.02 2.84 16 31 H 0.41 11.16 6.63 -92.71 -0.61 10.55 16 32 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.36 16.53 5.20 -92.71 -0.48 16.05 16 38 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 39 H 0.12 3.88 7.65 -2.91 -0.02 3.86 16 Total: -1.00 -74.62 329.21 2.63 -72.00 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.08 Total: 29.79 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.33 Total: 2.55 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -3.49 Total: -121.25 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.03 Total: -31.07 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.90 Total: 47.99 kcal Total: -74.62 2.63 -72.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275417334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.380 kcal (2) G-P(sol) polarization free energy of solvation -74.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds