Wall clock time and date at job start Tue Mar 31 2020 00:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.46959 * 2 1 4 4 C 1.52993 * 109.47581 * 120.00175 * 2 1 3 5 5 N 1.46500 * 109.47508 * 175.00219 * 4 2 1 6 6 C 1.34774 * 119.99962 * 179.97438 * 5 4 2 7 7 O 1.21776 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.41551 * 119.99907 * 179.72212 * 6 5 4 9 9 C 1.35626 * 120.00297 * 185.90147 * 8 6 5 10 10 C 1.41606 * 119.99922 * 9.22636 * 9 8 6 11 11 C 1.37944 * 126.10172 * 220.39389 * 10 9 8 12 12 C 1.40325 * 106.52586 * 179.97438 * 11 10 9 13 13 C 1.35154 * 107.20616 * 359.97438 * 12 11 10 14 14 O 1.34026 * 109.03216 * 359.77065 * 13 12 11 15 15 N 1.46504 * 109.46999 * 240.00392 * 2 1 3 16 16 C 1.46495 * 119.99930 * 299.99365 * 15 2 1 17 17 C 1.36937 * 120.00148 * 120.00003 * 15 2 1 18 18 H 1.07998 * 120.00127 * 24.86043 * 17 15 2 19 19 C 1.38812 * 119.99759 * 204.86834 * 17 15 2 20 20 N 1.31619 * 120.00456 * 12.23455 * 19 17 15 21 21 Si 1.86803 * 119.99581 * 192.24085 * 19 17 15 22 22 H 1.48502 * 109.47176 * 89.99760 * 21 19 17 23 23 H 1.48497 * 109.46717 * 209.99461 * 21 19 17 24 24 H 1.48495 * 109.47231 * 329.99717 * 21 19 17 25 25 H 1.09000 * 109.47565 * 299.99709 * 1 2 3 26 26 H 1.08997 * 109.47679 * 60.00219 * 1 2 3 27 27 H 1.09010 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47411 * 54.99962 * 4 2 1 29 29 H 1.09009 * 109.47176 * 295.00151 * 4 2 1 30 30 H 0.97002 * 119.99670 * 359.97438 * 5 4 2 31 31 H 1.08006 * 120.00072 * 5.90874 * 8 6 5 32 32 H 1.08003 * 120.00009 * 189.22223 * 9 8 6 33 33 H 1.07997 * 126.74274 * 359.97438 * 11 10 9 34 34 H 1.08000 * 126.39304 * 179.97438 * 12 11 10 35 35 H 1.07993 * 125.48132 * 180.02562 * 13 12 11 36 36 H 1.09003 * 109.47317 * 87.98350 * 16 15 2 37 37 H 1.09004 * 109.47737 * 207.98685 * 16 15 2 38 38 H 1.09006 * 109.47282 * 327.98260 * 16 15 2 39 39 H 0.96995 * 120.00201 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4282 2.1910 7 8 3.5677 -1.8843 3.1441 8 6 5.5833 -1.5349 2.1315 9 6 6.2503 -2.2437 3.0761 10 6 5.5327 -3.0359 4.0050 11 6 5.8121 -3.1653 5.3496 12 6 4.8501 -4.0416 5.8747 13 6 4.0403 -4.4038 4.8550 14 8 4.4495 -3.7937 3.7340 15 7 2.0182 -0.6906 -1.1963 16 6 1.6644 -2.0931 -1.4281 17 6 2.8055 -0.0250 -2.0976 18 1 3.3921 0.8239 -1.7789 19 6 2.8495 -0.4415 -3.4211 20 7 1.9669 -1.3099 -3.8675 21 14 4.1614 0.2306 -4.5685 22 1 5.3615 -0.6424 -4.5135 23 1 3.6356 0.2622 -5.9569 24 1 4.5301 1.6060 -4.1473 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.6055 -1.7198 1.2951 29 1 1.7517 -0.1583 2.1370 30 1 3.9824 -0.4627 0.4314 31 1 6.1283 -1.0518 1.3340 32 1 7.3287 -2.2040 3.1198 33 1 6.6138 -2.6862 5.8919 34 1 4.7715 -4.3661 6.9018 35 1 3.1965 -5.0734 4.9321 36 1 0.7191 -2.1449 -1.9683 37 1 2.4462 -2.5726 -2.0172 38 1 1.5647 -2.6057 -0.4712 39 1 1.9974 -1.6006 -4.7923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282344260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:18 Heat of formation + Delta-G solvation = 28.118660 kcal Electronic energy + Delta-G solvation = -21795.958269 eV Core-core repulsion = 18514.133333 eV Total energy + Delta-G solvation = -3281.824936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.22624 -39.39833 -36.77667 -34.06887 -33.58395 -32.65729 -31.99115 -29.43869 -28.68758 -26.01693 -25.99554 -23.49806 -22.82693 -21.49508 -20.77578 -19.55277 -18.90279 -17.61783 -16.90780 -16.32659 -15.64750 -15.52227 -15.29173 -14.54366 -14.19492 -13.94163 -13.82171 -13.12737 -12.74751 -12.71713 -12.67764 -12.40604 -12.25292 -12.16657 -11.93301 -11.41151 -11.04772 -10.84824 -10.76684 -10.40034 -10.27119 -9.99191 -9.90697 -9.77982 -9.72066 -9.47559 -8.58231 -8.43032 -7.81665 -6.78240 -5.78671 -3.25743 0.72251 2.28157 2.80967 3.33523 3.37065 3.39766 3.41734 3.74402 3.89921 4.43660 4.84991 5.06870 5.13684 5.21892 5.36086 5.42714 5.48356 5.62156 5.80363 5.85182 5.95511 6.08008 6.10699 6.15721 6.21943 6.33529 6.42018 6.46446 6.65884 6.79291 6.88060 6.93004 7.10530 7.37023 7.37535 7.67765 7.75716 8.11304 8.36368 8.73494 9.18800 9.81613 10.32823 11.27156 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.004408 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.519855 B = 6351.142458 C = 6949.346506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.067 0.933 4 C 0.109 3.891 5 N -0.699 5.699 6 C 0.529 3.471 7 O -0.544 6.544 8 C -0.186 4.186 9 C -0.016 4.016 10 C 0.021 3.979 11 C -0.192 4.192 12 C -0.228 4.228 13 C -0.021 4.021 14 O -0.129 6.129 15 N -0.592 5.592 16 C 0.166 3.834 17 C -0.263 4.263 18 H 0.068 0.932 19 C 0.007 3.993 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.279 1.279 25 H 0.040 0.960 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.409 0.591 31 H 0.138 0.862 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.195 0.805 36 H 0.019 0.981 37 H 0.049 0.951 38 H -0.004 1.004 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.432 -2.372 14.539 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.086 0.914 4 C -0.017 4.017 5 N -0.349 5.349 6 C 0.318 3.682 7 O -0.425 6.425 8 C -0.207 4.207 9 C -0.036 4.036 10 C -0.030 4.030 11 C -0.212 4.212 12 C -0.248 4.248 13 C -0.092 4.092 14 O -0.022 6.022 15 N -0.315 5.315 16 C 0.021 3.979 17 C -0.392 4.392 18 H 0.085 0.915 19 C -0.193 4.193 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.205 1.205 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.156 0.844 32 H 0.170 0.830 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.212 0.788 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.015 0.985 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.817 -2.772 14.684 16.035 hybrid contribution 0.779 0.522 -1.002 1.372 sum 6.596 -2.250 13.682 15.355 Atomic orbital electron populations 1.22167 0.97571 1.01310 1.00490 1.20633 0.92552 0.95484 0.86531 0.91448 1.21880 0.79766 1.01132 0.98949 1.45857 1.08375 1.58140 1.22559 1.17130 0.88264 0.79403 0.83425 1.90821 1.70242 1.48104 1.33298 1.22439 0.95286 1.02634 1.00355 1.20557 0.98806 0.92575 0.91710 1.19590 0.89157 0.99475 0.94746 1.22063 1.02842 1.02992 0.93286 1.21564 0.99143 1.03889 1.00158 1.24098 1.00749 1.00298 0.84012 1.84317 1.36354 1.46775 1.34712 1.43951 1.58111 1.07923 1.21537 1.20684 0.99609 0.83464 0.94155 1.19191 1.18229 1.13079 0.88699 0.91462 1.25065 0.98050 0.99477 0.96659 1.70063 1.34475 1.34975 1.15119 0.86290 0.81369 0.78602 0.80434 1.21476 1.21794 1.20482 0.94054 0.92247 0.93221 0.92202 0.92677 0.75445 0.84443 0.83018 0.83718 0.83924 0.78811 0.96269 0.93210 0.98531 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.19 37.15 0.34 -2.48 16 2 C 0.16 3.06 2.87 -67.94 -0.20 2.87 16 3 H 0.07 1.30 7.88 -51.93 -0.41 0.90 16 4 C 0.11 1.98 4.91 -4.05 -0.02 1.96 16 5 N -0.70 -12.35 5.38 -63.24 -0.34 -12.69 16 6 C 0.53 9.25 7.37 -15.00 -0.11 9.14 16 7 O -0.54 -10.89 12.40 -19.72 -0.24 -11.13 16 8 C -0.19 -2.57 9.85 -39.25 -0.39 -2.96 16 9 C -0.02 -0.20 9.95 -39.23 -0.39 -0.59 16 10 C 0.02 0.31 5.32 -38.41 -0.20 0.10 16 11 C -0.19 -2.48 10.90 -38.90 -0.42 -2.90 16 12 C -0.23 -2.83 10.87 -39.89 -0.43 -3.26 16 13 C -0.02 -0.28 12.06 29.63 0.36 0.07 16 14 O -0.13 -2.15 7.81 -20.17 -0.16 -2.31 16 15 N -0.59 -13.88 2.28 -173.49 -0.40 -14.27 16 16 C 0.17 4.01 8.06 59.84 0.48 4.49 16 17 C -0.26 -6.70 9.29 -15.06 -0.14 -6.84 16 18 H 0.07 1.65 7.84 -52.49 -0.41 1.24 16 19 C 0.01 0.18 5.06 -17.43 -0.09 0.09 16 20 N -0.90 -25.59 10.83 55.49 0.60 -24.99 16 21 Si 0.90 20.92 29.57 -169.99 -5.03 15.89 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.91 7.67 -51.92 -0.40 0.52 16 28 H 0.06 1.19 6.89 -51.93 -0.36 0.83 16 29 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 30 H 0.41 7.21 7.85 -40.82 -0.32 6.88 16 31 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.02 0.50 7.71 -51.93 -0.40 0.10 16 37 H 0.05 1.31 6.97 -51.93 -0.36 0.95 16 38 H 0.00 -0.08 6.54 -51.93 -0.34 -0.42 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 327.65 15.07 4.94 4.94 Total: -1.00 -31.65 327.65 -7.35 -39.00 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.52 Total: 5.87 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.21 Total: -0.30 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.13 Total: -51.95 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.40 Total: -13.44 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.65 -7.35 -39.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282344260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.117 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds