Wall clock time and date at job start Tue Mar 31 2020 00:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 109.46959 * 2 1 4 4 C 1.52993 * 109.47581 * 120.00175 * 2 1 3 5 5 N 1.46500 * 109.47508 * 175.00219 * 4 2 1 6 6 C 1.34774 * 119.99962 * 179.97438 * 5 4 2 7 7 O 1.21776 * 120.00458 * 359.97438 * 6 5 4 8 8 C 1.41551 * 119.99907 * 179.72212 * 6 5 4 9 9 C 1.35626 * 120.00297 * 185.90147 * 8 6 5 10 10 C 1.41606 * 119.99922 * 9.22636 * 9 8 6 11 11 C 1.37944 * 126.10172 * 220.39389 * 10 9 8 12 12 C 1.40325 * 106.52586 * 179.97438 * 11 10 9 13 13 C 1.35154 * 107.20616 * 359.97438 * 12 11 10 14 14 O 1.34026 * 109.03216 * 359.77065 * 13 12 11 15 15 N 1.46504 * 109.46999 * 240.00392 * 2 1 3 16 16 C 1.46495 * 119.99930 * 299.99365 * 15 2 1 17 17 C 1.36937 * 120.00148 * 120.00003 * 15 2 1 18 18 H 1.07998 * 120.00127 * 24.86043 * 17 15 2 19 19 C 1.38812 * 119.99759 * 204.86834 * 17 15 2 20 20 N 1.31619 * 120.00456 * 12.23455 * 19 17 15 21 21 Si 1.86803 * 119.99581 * 192.24085 * 19 17 15 22 22 H 1.48502 * 109.47176 * 89.99760 * 21 19 17 23 23 H 1.48497 * 109.46717 * 209.99461 * 21 19 17 24 24 H 1.48495 * 109.47231 * 329.99717 * 21 19 17 25 25 H 1.09000 * 109.47565 * 299.99709 * 1 2 3 26 26 H 1.08997 * 109.47679 * 60.00219 * 1 2 3 27 27 H 1.09010 * 109.46865 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47411 * 54.99962 * 4 2 1 29 29 H 1.09009 * 109.47176 * 295.00151 * 4 2 1 30 30 H 0.97002 * 119.99670 * 359.97438 * 5 4 2 31 31 H 1.08006 * 120.00072 * 5.90874 * 8 6 5 32 32 H 1.08003 * 120.00009 * 189.22223 * 9 8 6 33 33 H 1.07997 * 126.74274 * 359.97438 * 11 10 9 34 34 H 1.08000 * 126.39304 * 179.97438 * 12 11 10 35 35 H 1.07993 * 125.48132 * 180.02562 * 13 12 11 36 36 H 1.09003 * 109.47317 * 87.98350 * 16 15 2 37 37 H 1.09004 * 109.47737 * 207.98685 * 16 15 2 38 38 H 1.09006 * 109.47282 * 327.98260 * 16 15 2 39 39 H 0.96995 * 120.00201 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4282 2.1910 7 8 3.5677 -1.8843 3.1441 8 6 5.5833 -1.5349 2.1315 9 6 6.2503 -2.2437 3.0761 10 6 5.5327 -3.0359 4.0050 11 6 5.8121 -3.1653 5.3496 12 6 4.8501 -4.0416 5.8747 13 6 4.0403 -4.4038 4.8550 14 8 4.4495 -3.7937 3.7340 15 7 2.0182 -0.6906 -1.1963 16 6 1.6644 -2.0931 -1.4281 17 6 2.8055 -0.0250 -2.0976 18 1 3.3921 0.8239 -1.7789 19 6 2.8495 -0.4415 -3.4211 20 7 1.9669 -1.3099 -3.8675 21 14 4.1614 0.2306 -4.5685 22 1 5.3615 -0.6424 -4.5135 23 1 3.6356 0.2622 -5.9569 24 1 4.5301 1.6060 -4.1473 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0278 0.0005 28 1 1.6055 -1.7198 1.2951 29 1 1.7517 -0.1583 2.1370 30 1 3.9824 -0.4627 0.4314 31 1 6.1283 -1.0518 1.3340 32 1 7.3287 -2.2040 3.1198 33 1 6.6138 -2.6862 5.8919 34 1 4.7715 -4.3661 6.9018 35 1 3.1965 -5.0734 4.9321 36 1 0.7191 -2.1449 -1.9683 37 1 2.4462 -2.5726 -2.0172 38 1 1.5647 -2.6057 -0.4712 39 1 1.9974 -1.6006 -4.7923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282344260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:17 Heat of formation + Delta-G solvation = 9.297748 kcal Electronic energy + Delta-G solvation = -21796.774405 eV Core-core repulsion = 18514.133333 eV Total energy + Delta-G solvation = -3282.641072 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.25532 -40.73043 -38.44995 -35.48364 -34.87214 -33.72141 -33.65579 -31.22422 -29.79024 -28.01661 -27.33346 -25.08981 -24.26720 -22.49766 -21.91334 -21.09700 -20.18284 -18.90355 -18.68371 -17.48086 -17.14474 -16.79165 -16.72604 -16.12874 -15.58622 -15.42431 -14.94298 -14.63214 -14.48159 -14.14855 -13.80182 -13.66050 -13.58690 -13.35136 -13.11819 -13.03894 -12.85645 -12.65646 -12.50228 -12.26704 -12.09734 -11.80432 -11.51412 -11.01239 -10.89232 -10.63121 -10.59048 -9.84724 -8.84569 -8.74872 -7.80433 -5.28765 -0.30826 1.25288 1.51162 1.51970 1.60133 1.82551 2.37892 2.49985 2.55645 2.65507 3.36494 3.64478 3.90365 4.05387 4.12721 4.20920 4.26210 4.37185 4.55426 4.59460 4.71747 4.75732 4.85322 4.91703 4.95054 5.02781 5.11887 5.18624 5.21531 5.36054 5.40317 5.42995 5.63469 5.69546 5.71181 5.75327 6.36983 6.37046 6.76312 7.17675 7.40903 7.88336 8.36161 9.24964 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022954 B = 0.004408 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.519855 B = 6351.142458 C = 6949.346506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.074 0.926 4 C 0.122 3.878 5 N -0.704 5.704 6 C 0.524 3.476 7 O -0.575 6.575 8 C -0.216 4.216 9 C 0.006 3.994 10 C -0.017 4.017 11 C -0.188 4.188 12 C -0.231 4.231 13 C -0.040 4.040 14 O -0.164 6.164 15 N -0.601 5.601 16 C 0.187 3.813 17 C -0.258 4.258 18 H 0.081 0.919 19 C -0.051 4.051 20 N -0.940 5.940 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.304 1.304 24 H -0.264 1.264 25 H 0.075 0.925 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.409 0.591 31 H 0.163 0.837 32 H 0.198 0.802 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.217 0.783 36 H -0.007 1.007 37 H 0.022 0.978 38 H 0.012 0.988 39 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.181 -1.497 16.303 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.049 3.951 3 H 0.093 0.907 4 C -0.004 4.004 5 N -0.354 5.354 6 C 0.315 3.685 7 O -0.458 6.458 8 C -0.236 4.236 9 C -0.013 4.013 10 C -0.067 4.067 11 C -0.207 4.207 12 C -0.250 4.250 13 C -0.110 4.110 14 O -0.058 6.058 15 N -0.324 5.324 16 C 0.042 3.958 17 C -0.388 4.388 18 H 0.099 0.901 19 C -0.246 4.246 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.214 1.214 23 H -0.231 1.231 24 H -0.189 1.189 25 H 0.094 0.906 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.246 0.754 31 H 0.181 0.819 32 H 0.215 0.785 33 H 0.191 0.809 34 H 0.188 0.812 35 H 0.234 0.766 36 H 0.012 0.988 37 H 0.040 0.960 38 H 0.030 0.970 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.581 -1.866 16.485 18.240 hybrid contribution 0.218 0.198 -1.358 1.389 sum 7.799 -1.668 15.127 17.101 Atomic orbital electron populations 1.22056 0.96338 1.01068 1.01285 1.20782 0.93456 0.95515 0.85306 0.90738 1.21635 0.80422 0.99888 0.98466 1.45874 1.07971 1.58651 1.22862 1.17717 0.89772 0.78385 0.82623 1.90801 1.71250 1.49334 1.34392 1.22474 0.93346 1.05203 1.02569 1.21171 1.00751 0.89885 0.89499 1.20234 0.89484 1.00676 0.96327 1.22522 1.03178 1.02186 0.92772 1.21988 0.98494 1.03305 1.01215 1.24767 1.01725 1.00685 0.83797 1.84284 1.37460 1.47787 1.36287 1.44086 1.58315 1.07729 1.22283 1.20312 0.97214 0.84331 0.93930 1.19598 1.17783 1.12613 0.88842 0.90146 1.25808 1.00082 1.00334 0.98350 1.70234 1.36516 1.36977 1.14921 0.85270 0.78797 0.78616 0.77743 1.21363 1.23108 1.18860 0.90611 0.93994 0.94018 0.94118 0.91441 0.75432 0.81932 0.78549 0.80926 0.81208 0.76639 0.98825 0.95952 0.97001 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.19 71.98 0.66 -4.56 16 2 C 0.16 5.98 2.87 44.99 0.13 6.11 16 3 H 0.07 2.76 7.88 -2.39 -0.02 2.74 16 4 C 0.12 4.36 4.91 86.38 0.42 4.79 16 5 N -0.70 -24.38 5.38 -472.19 -2.54 -26.92 16 6 C 0.52 18.01 7.37 85.06 0.63 18.64 16 7 O -0.57 -22.94 12.40 19.16 0.24 -22.70 16 8 C -0.22 -5.60 9.85 22.48 0.22 -5.38 16 9 C 0.01 0.14 9.95 22.50 0.22 0.37 16 10 C -0.02 -0.49 5.32 23.03 0.12 -0.36 16 11 C -0.19 -4.37 10.90 22.71 0.25 -4.12 16 12 C -0.23 -5.25 10.87 22.07 0.24 -5.01 16 13 C -0.04 -1.05 12.06 67.11 0.81 -0.24 16 14 O -0.16 -5.43 7.81 17.54 0.14 -5.29 16 15 N -0.60 -28.16 2.28 -702.80 -1.60 -29.77 16 16 C 0.19 9.30 8.06 127.77 1.03 10.33 16 17 C -0.26 -13.06 9.29 84.03 0.78 -12.28 16 18 H 0.08 3.80 7.84 -2.91 -0.02 3.78 16 19 C -0.05 -2.70 5.06 84.86 0.43 -2.27 16 20 N -0.94 -54.60 10.83 21.65 0.23 -54.37 16 21 Si 0.97 43.07 29.57 68.60 2.03 45.10 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.52 7.67 -2.38 -0.02 1.50 16 28 H 0.04 1.61 6.89 -2.39 -0.02 1.59 16 29 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.41 14.05 7.85 -92.71 -0.73 13.32 16 31 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.20 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.17 2.87 8.06 -2.91 -0.02 2.85 16 34 H 0.17 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.22 4.14 8.06 -2.91 -0.02 4.12 16 36 H -0.01 -0.36 7.71 -2.39 -0.02 -0.38 16 37 H 0.02 1.20 6.97 -2.38 -0.02 1.18 16 38 H 0.01 0.53 6.54 -2.38 -0.02 0.52 16 39 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -69.47 327.65 4.76 -64.70 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.32 Total: 23.23 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 5.95 Total: 6.02 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -3.91 Total: -111.06 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: 0.37 Total: -27.99 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.47 4.76 -64.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282344260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.002 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds