Wall clock time and date at job start Tue Mar 31 2020 00:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46734 * 2 1 4 4 C 1.52998 * 109.47434 * 120.00313 * 2 1 3 5 5 N 1.46491 * 109.47281 * 175.00304 * 4 2 1 6 6 C 1.34775 * 120.00030 * 179.97438 * 5 4 2 7 7 O 1.21773 * 120.00205 * 359.97438 * 6 5 4 8 8 C 1.41560 * 119.99842 * 179.97438 * 6 5 4 9 9 C 1.35623 * 119.99675 * 179.97438 * 8 6 5 10 10 C 1.41610 * 120.00051 * 180.02562 * 9 8 6 11 11 C 1.37947 * 126.10732 * 180.02562 * 10 9 8 12 12 C 1.40314 * 106.53087 * 179.73149 * 11 10 9 13 13 C 1.35153 * 107.20412 * 0.40976 * 12 11 10 14 14 O 1.34020 * 109.03481 * 359.58092 * 13 12 11 15 15 N 1.46499 * 109.46747 * 240.00284 * 2 1 3 16 16 C 1.46492 * 120.00223 * 299.99533 * 15 2 1 17 17 C 1.36946 * 119.99766 * 120.00034 * 15 2 1 18 18 H 1.07994 * 119.99722 * 327.88303 * 17 15 2 19 19 C 1.38811 * 119.99698 * 147.88527 * 17 15 2 20 20 N 1.31618 * 119.99738 * 152.77008 * 19 17 15 21 21 Si 1.86804 * 120.00442 * 332.77497 * 19 17 15 22 22 H 1.48495 * 109.47137 * 95.39478 * 21 19 17 23 23 H 1.48497 * 109.47122 * 215.39694 * 21 19 17 24 24 H 1.48501 * 109.46766 * 335.39769 * 21 19 17 25 25 H 1.08998 * 109.46932 * 299.99647 * 1 2 3 26 26 H 1.08999 * 109.47319 * 59.99925 * 1 2 3 27 27 H 1.09001 * 109.47471 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46715 * 54.99633 * 4 2 1 29 29 H 1.09001 * 109.47028 * 295.00044 * 4 2 1 30 30 H 0.97004 * 120.00053 * 359.97438 * 5 4 2 31 31 H 1.08001 * 120.00262 * 0.02562 * 8 6 5 32 32 H 1.08001 * 120.00063 * 0.02562 * 9 8 6 33 33 H 1.08001 * 126.73235 * 0.02562 * 11 10 9 34 34 H 1.08001 * 126.40092 * 180.29170 * 12 11 10 35 35 H 1.08002 * 125.48584 * 179.85731 * 13 12 11 36 36 H 1.09003 * 109.47108 * 95.14611 * 16 15 2 37 37 H 1.08996 * 109.47580 * 215.14549 * 16 15 2 38 38 H 1.08999 * 109.47093 * 335.14634 * 16 15 2 39 39 H 0.97000 * 120.00387 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5000 -0.8263 1.1905 6 6 4.1731 -1.4282 2.1910 7 8 3.5677 -1.8844 3.1441 8 6 5.5839 -1.5302 2.1340 9 6 6.2612 -2.1354 3.1412 10 6 7.6725 -2.2370 3.0845 11 6 8.4840 -2.8239 4.0331 12 6 9.8005 -2.7013 3.5633 13 6 9.7436 -2.0518 2.3795 14 8 8.4636 -1.7772 2.0926 15 7 2.0182 -0.6906 -1.1962 16 6 1.6644 -2.0931 -1.4281 17 6 2.8055 -0.0250 -2.0976 18 1 2.6680 1.0344 -2.2558 19 6 3.7802 -0.7121 -2.8080 20 7 4.1582 -0.2805 -3.9926 21 14 4.5554 -2.2493 -2.0830 22 1 3.8489 -3.4498 -2.5975 23 1 5.9870 -2.3126 -2.4723 24 1 4.4463 -2.2074 -0.6026 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.6054 -1.7198 1.2950 29 1 1.7517 -0.1584 2.1369 30 1 3.9824 -0.4627 0.4315 31 1 6.1209 -1.1253 1.2890 32 1 5.7242 -2.5400 3.9864 33 1 8.1677 -3.2908 4.9542 34 1 10.6928 -3.0575 4.0566 35 1 10.5926 -1.7989 1.7616 36 1 0.7892 -2.1447 -2.0758 37 1 2.5002 -2.6046 -1.9054 38 1 1.4404 -2.5735 -0.4757 39 1 4.8396 -0.7604 -4.4890 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282344265.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:27 Heat of formation + Delta-G solvation = 27.030814 kcal Electronic energy + Delta-G solvation = -21567.421117 eV Core-core repulsion = 18285.549009 eV Total energy + Delta-G solvation = -3281.872109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65696 -39.51480 -37.03271 -34.18274 -33.69501 -33.16101 -32.15246 -30.26804 -29.08152 -26.22217 -26.13054 -23.74897 -23.01717 -21.99181 -20.59721 -19.74850 -18.98617 -17.61230 -17.01490 -16.71010 -16.19211 -15.77331 -15.64814 -14.94256 -14.65441 -14.12603 -13.89256 -13.14796 -13.11230 -12.94823 -12.71803 -12.46191 -12.33203 -12.29160 -12.21166 -12.06466 -11.91478 -11.17516 -10.81075 -10.66517 -10.53434 -10.14910 -10.05031 -10.01986 -9.67918 -9.55358 -8.55210 -8.50961 -7.99850 -6.99623 -6.08920 -3.42458 0.45184 2.03665 2.63031 2.84300 3.27859 3.43138 3.46334 3.70106 3.81229 4.45793 4.65468 4.77309 4.84473 4.91621 5.15319 5.21746 5.41892 5.48230 5.51861 5.61015 5.77688 5.92666 5.96911 5.98304 6.04540 6.10437 6.22440 6.27199 6.33517 6.36926 6.52900 6.68055 6.72942 6.78446 6.94366 6.99695 7.92664 8.04583 8.27370 8.64023 8.89067 9.63846 10.03345 11.06446 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.005297 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.021839 B = 5284.675638 C = 6455.560959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.078 0.922 4 C 0.102 3.898 5 N -0.698 5.698 6 C 0.541 3.459 7 O -0.566 6.566 8 C -0.185 4.185 9 C -0.011 4.011 10 C 0.001 3.999 11 C -0.174 4.174 12 C -0.220 4.220 13 C -0.024 4.024 14 O -0.163 6.163 15 N -0.603 5.603 16 C 0.113 3.887 17 C -0.277 4.277 18 H 0.081 0.919 19 C 0.037 3.963 20 N -0.891 5.891 21 Si 0.869 3.131 22 H -0.290 1.290 23 H -0.305 1.305 24 H -0.258 1.258 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.414 0.586 31 H 0.130 0.870 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.205 0.795 36 H 0.017 0.983 37 H 0.038 0.962 38 H 0.033 0.967 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -2.968 13.642 15.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.049 3.951 3 H 0.096 0.904 4 C -0.025 4.025 5 N -0.349 5.349 6 C 0.331 3.669 7 O -0.449 6.449 8 C -0.206 4.206 9 C -0.032 4.032 10 C -0.048 4.048 11 C -0.193 4.193 12 C -0.239 4.239 13 C -0.093 4.093 14 O -0.059 6.059 15 N -0.327 5.327 16 C -0.032 4.032 17 C -0.405 4.405 18 H 0.098 0.902 19 C -0.164 4.164 20 N -0.532 5.532 21 Si 0.699 3.301 22 H -0.218 1.218 23 H -0.234 1.234 24 H -0.182 1.182 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.252 0.748 31 H 0.147 0.853 32 H 0.177 0.823 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.222 0.778 36 H 0.035 0.965 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.272 -3.109 13.836 15.506 hybrid contribution 1.004 -0.956 -0.156 1.395 sum 7.276 -4.065 13.680 16.019 Atomic orbital electron populations 1.22138 0.96918 1.01410 1.01073 1.20781 0.92887 0.96412 0.85036 0.90391 1.21985 0.79956 1.01152 0.99359 1.46028 1.08418 1.57468 1.22972 1.16933 0.87941 0.79067 0.82962 1.90770 1.70888 1.49463 1.33794 1.22301 0.95062 1.02778 1.00476 1.20602 0.87627 0.95840 0.99084 1.19972 0.91687 1.03932 0.89248 1.22303 0.92564 1.03670 1.00786 1.21750 0.98431 1.05963 0.97713 1.24321 0.84547 1.01846 0.98630 1.84156 1.17182 1.62491 1.42027 1.44131 1.58343 1.08897 1.21365 1.21271 0.98242 0.85906 0.97734 1.18804 1.11174 0.95307 1.15182 0.90163 1.25337 0.97470 0.97651 0.95970 1.69939 1.31727 1.41545 1.09973 0.87187 0.77665 0.83873 0.81332 1.21836 1.23358 1.18241 0.93284 0.92085 0.93173 0.92234 0.92144 0.74773 0.85251 0.82287 0.82738 0.83062 0.77821 0.96456 0.94411 0.94791 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.19 37.16 0.34 -2.10 16 2 C 0.16 2.85 2.87 -67.93 -0.19 2.66 16 3 H 0.08 1.44 7.89 -51.93 -0.41 1.03 16 4 C 0.10 1.79 4.93 -4.05 -0.02 1.77 16 5 N -0.70 -13.11 4.53 -63.25 -0.29 -13.39 16 6 C 0.54 10.09 7.56 -14.99 -0.11 9.98 16 7 O -0.57 -11.59 16.11 5.12 0.08 -11.50 16 8 C -0.19 -3.04 9.41 -39.25 -0.37 -3.41 16 9 C -0.01 -0.16 9.39 -39.23 -0.37 -0.53 16 10 C 0.00 0.01 6.84 -38.40 -0.26 -0.25 16 11 C -0.17 -1.91 10.90 -38.91 -0.42 -2.34 16 12 C -0.22 -2.12 10.87 -39.90 -0.43 -2.56 16 13 C -0.02 -0.25 12.06 29.63 0.36 0.11 16 14 O -0.16 -2.25 10.18 4.67 0.05 -2.20 16 15 N -0.60 -13.31 1.93 -173.49 -0.33 -13.65 16 16 C 0.11 2.43 8.77 59.84 0.52 2.95 16 17 C -0.28 -7.20 9.57 -15.06 -0.14 -7.35 16 18 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 19 C 0.04 1.01 5.27 -17.43 -0.09 0.92 16 20 N -0.89 -26.23 13.97 55.49 0.78 -25.46 16 21 Si 0.87 21.08 24.74 -169.99 -4.20 16.88 16 22 H -0.29 -7.20 6.62 56.52 0.37 -6.82 16 23 H -0.31 -7.68 7.11 56.52 0.40 -7.27 16 24 H -0.26 -5.81 5.44 56.52 0.31 -5.50 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.77 7.67 -51.93 -0.40 0.37 16 28 H 0.06 1.09 6.86 -51.93 -0.36 0.74 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.41 8.16 6.66 -40.82 -0.27 7.89 16 31 H 0.13 2.10 7.72 -52.49 -0.41 1.70 16 32 H 0.16 2.10 7.46 -52.49 -0.39 1.71 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.21 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.04 0.89 2.75 -51.93 -0.14 0.74 16 38 H 0.03 0.65 6.53 -51.93 -0.34 0.31 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 324.90 15.07 4.90 4.90 Total: -1.00 -31.52 324.90 -5.58 -37.10 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.35 Total: 7.49 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.20 Total: -0.15 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.15 Total: -52.50 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.13 Total: -13.70 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.20 Total: 16.88 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.52 -5.58 -37.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282344265.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.129 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds