Wall clock time and date at job start Tue Mar 31 2020 00:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35708 * 117.00212 * 2 1 4 4 C 1.38992 * 119.91668 * 179.97438 * 3 2 1 5 5 C 1.37699 * 120.09248 * 180.02562 * 4 3 2 6 6 C 1.39734 * 119.91201 * 359.97438 * 5 4 3 7 7 C 1.47600 * 120.09004 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99961 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00096 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27906 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 H 1.09002 * 109.47682 * 64.99618 * 11 10 9 13 13 C 1.53003 * 109.47530 * 184.99929 * 11 10 9 14 14 N 1.46506 * 109.47012 * 304.99483 * 11 10 9 15 15 C 1.36937 * 119.99934 * 154.99714 * 14 11 10 16 16 H 1.07998 * 120.00035 * 0.02562 * 15 14 11 17 17 C 1.38810 * 120.00229 * 180.02562 * 15 14 11 18 18 N 1.31626 * 119.99636 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00308 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47134 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47520 * 120.00104 * 19 17 15 22 22 H 1.48501 * 109.47007 * 240.00143 * 19 17 15 23 23 C 1.39736 * 119.82061 * 0.27717 * 6 5 4 24 24 C 1.37698 * 119.90983 * 359.46455 * 23 6 5 25 25 H 1.09007 * 109.47151 * 60.00340 * 1 2 3 26 26 H 1.08996 * 109.47478 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47476 * 300.00135 * 1 2 3 28 28 H 1.08005 * 119.94896 * 0.03194 * 4 3 2 29 29 H 1.07999 * 120.04219 * 179.97438 * 5 4 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 31 31 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 32 32 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 33 33 H 1.09000 * 109.46800 * 300.00452 * 13 11 10 34 34 H 1.09002 * 109.46892 * 59.99206 * 13 11 10 35 35 H 1.09001 * 109.47478 * 179.97438 * 13 11 10 36 36 H 0.97000 * 120.00390 * 335.00529 * 14 11 10 37 37 H 0.97001 * 119.99765 * 180.02562 * 18 17 15 38 38 H 1.08005 * 120.03926 * 179.72146 * 23 6 5 39 39 H 1.08005 * 119.95108 * 180.25220 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4333 1.2798 0.0005 5 6 4.0622 2.5048 0.0011 6 6 3.3030 3.6779 0.0005 7 6 3.9731 4.9930 0.0017 8 8 5.1873 5.0566 0.0026 9 7 3.2391 6.1234 0.0017 10 6 3.9042 7.4286 -0.0034 11 6 2.8505 8.5379 -0.0092 12 1 2.2844 8.5063 0.9217 13 6 3.5412 9.8969 -0.1402 14 7 1.9409 8.3415 -1.1408 15 6 0.6687 8.8456 -1.0921 16 1 0.3359 9.3883 -0.2197 17 6 -0.1933 8.6590 -2.1640 18 7 0.2124 7.9980 -3.2275 19 14 -1.9286 9.3473 -2.0979 20 1 -2.1357 10.0443 -0.8031 21 1 -2.1233 10.3072 -3.2140 22 1 -2.9066 8.2370 -2.2237 23 6 1.9077 3.6026 0.0053 24 6 1.2864 2.3738 -0.0006 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 4.0193 0.3726 0.0004 29 1 5.1408 2.5587 0.0019 30 1 2.2704 6.0726 0.0005 31 1 4.5261 7.5229 0.8869 32 1 4.5278 7.5153 -0.8931 33 1 4.2180 10.0430 0.7016 34 1 4.1074 9.9284 -1.0711 35 1 2.7905 10.6871 -0.1448 36 1 2.2398 7.8542 -1.9245 37 1 -0.3898 7.8679 -3.9767 38 1 1.3174 4.5071 0.0095 39 1 0.2079 2.3148 -0.0010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317283511.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:51:18 Heat of formation + Delta-G solvation = -61.406275 kcal Electronic energy + Delta-G solvation = -21116.336856 eV Core-core repulsion = 17830.629827 eV Total energy + Delta-G solvation = -3285.707029 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45696 -40.45978 -38.26094 -37.71035 -35.25131 -33.73014 -32.18089 -31.45166 -30.47894 -28.45519 -27.08384 -25.66210 -24.28650 -23.33843 -21.73797 -21.29109 -19.55500 -19.22347 -18.39661 -17.57352 -16.91686 -16.71794 -16.53051 -16.18539 -15.98591 -15.45589 -15.38673 -14.86402 -14.64881 -14.39959 -13.92892 -13.68655 -13.64156 -13.62194 -13.31478 -13.06445 -12.81424 -12.80450 -12.49449 -12.12936 -12.04026 -11.85826 -11.70496 -11.64263 -11.07346 -10.94096 -10.13387 -10.08648 -9.28874 -9.02412 -7.90915 -5.20358 -0.14144 0.29071 1.49330 1.51543 1.60012 1.82946 2.22957 2.29407 2.58189 2.82512 3.43407 3.68311 3.77600 3.84338 3.90258 3.99971 4.16999 4.30507 4.39594 4.39813 4.44923 4.56220 4.64282 4.74000 4.74860 4.85009 4.93486 5.07194 5.07870 5.21748 5.26043 5.33541 5.40404 5.57412 5.57641 5.62399 6.29527 6.30619 6.57119 7.20143 7.36930 8.08758 8.33789 9.31979 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.013949 B = 0.004848 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.896004 B = 5774.201876 C = 7484.487216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.151 3.849 4 C -0.164 4.164 5 C -0.026 4.026 6 C -0.192 4.192 7 C 0.555 3.445 8 O -0.586 6.586 9 N -0.708 5.708 10 C 0.122 3.878 11 C 0.159 3.841 12 H 0.061 0.939 13 C -0.155 4.155 14 N -0.733 5.733 15 C -0.233 4.233 16 H 0.079 0.921 17 C -0.070 4.070 18 N -0.967 5.967 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.301 1.301 22 H -0.294 1.294 23 C -0.043 4.043 24 C -0.216 4.216 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.068 0.932 28 H 0.157 0.843 29 H 0.143 0.857 30 H 0.409 0.591 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.372 0.628 37 H 0.249 0.751 38 H 0.133 0.867 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.422 -13.509 9.300 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.104 3.896 4 C -0.182 4.182 5 C -0.045 4.045 6 C -0.195 4.195 7 C 0.345 3.655 8 O -0.469 6.469 9 N -0.358 5.358 10 C -0.002 4.002 11 C 0.050 3.950 12 H 0.079 0.921 13 C -0.215 4.215 14 N -0.374 5.374 15 C -0.365 4.365 16 H 0.097 0.903 17 C -0.262 4.262 18 N -0.618 5.618 19 Si 0.796 3.204 20 H -0.190 1.190 21 H -0.229 1.229 22 H -0.222 1.222 23 C -0.062 4.062 24 C -0.234 4.234 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.161 0.839 30 H 0.247 0.753 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.204 0.796 37 H 0.058 0.942 38 H 0.150 0.850 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.171 -13.528 9.402 16.617 hybrid contribution -1.492 0.626 -0.797 1.804 sum 0.679 -12.902 8.605 15.523 Atomic orbital electron populations 1.23437 0.76105 1.05976 1.02512 1.86022 1.23720 1.26225 1.87640 1.19429 0.92645 0.84646 0.92856 1.20578 0.91574 0.98791 1.07245 1.21129 1.00732 0.90068 0.92540 1.19847 0.94289 0.93100 1.12253 1.18506 0.86510 0.84904 0.75610 1.90695 1.14810 1.88249 1.53143 1.45909 1.11142 1.05452 1.73339 1.21621 0.95157 0.81660 1.01774 1.20693 0.90024 0.92712 0.91525 0.92097 1.22235 1.00165 0.97823 1.01303 1.42635 1.10943 1.66214 1.17590 1.19618 0.89314 1.26849 1.00720 0.90310 1.25441 1.01946 1.02249 0.96567 1.69834 1.36662 1.47899 1.07392 0.85177 0.80688 0.77199 0.77290 1.19045 1.22871 1.22171 1.21275 0.93014 0.98599 0.93303 1.21403 1.01589 0.91353 1.09094 0.91889 0.85726 0.91335 0.82497 0.83914 0.75347 0.89881 0.93031 0.90743 0.93929 0.93534 0.79572 0.94235 0.84961 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.32 -6.44 10.48 -90.29 -0.95 -7.39 16 3 C 0.15 3.46 6.70 22.63 0.15 3.61 16 4 C -0.16 -3.75 9.97 22.32 0.22 -3.53 16 5 C -0.03 -0.69 9.58 22.50 0.22 -0.48 16 6 C -0.19 -5.87 5.87 -20.08 -0.12 -5.99 16 7 C 0.56 19.84 7.76 86.71 0.67 20.52 16 8 O -0.59 -23.88 16.34 -3.98 -0.06 -23.95 16 9 N -0.71 -24.50 5.34 -466.22 -2.49 -26.99 16 10 C 0.12 4.17 5.23 86.38 0.45 4.62 16 11 C 0.16 5.77 3.05 44.99 0.14 5.91 16 12 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 13 C -0.16 -5.10 9.49 71.98 0.68 -4.42 16 14 N -0.73 -34.00 4.56 -322.93 -1.47 -35.47 16 15 C -0.23 -11.94 9.93 84.03 0.83 -11.11 16 16 H 0.08 3.87 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 18 N -0.97 -56.66 13.06 21.65 0.28 -56.38 16 19 Si 0.97 43.95 29.55 68.60 2.03 45.97 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 C -0.04 -1.19 9.53 22.50 0.21 -0.97 16 24 C -0.22 -5.05 9.01 22.32 0.20 -4.85 16 25 H 0.06 0.77 7.65 -2.38 -0.02 0.75 16 26 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 0.74 7.65 -2.39 -0.02 0.72 16 28 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 29 H 0.14 3.72 7.64 -2.91 -0.02 3.70 16 30 H 0.41 14.14 6.16 -92.71 -0.57 13.57 16 31 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 32 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.37 19.19 7.80 -92.71 -0.72 18.47 16 37 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 38 H 0.13 3.66 6.39 -2.91 -0.02 3.64 16 39 H 0.16 2.86 6.28 -2.91 -0.02 2.84 16 Total: -1.00 -65.62 332.80 2.36 -63.26 By element: Atomic # 1 Polarization: 39.87 SS G_CDS: -0.22 Total: 39.65 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 5.25 Total: 1.30 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -3.68 Total: -118.84 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -1.01 Total: -31.34 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.62 2.36 -63.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317283511.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.851 kcal (2) G-P(sol) polarization free energy of solvation -65.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds