Wall clock time and date at job start Tue Mar 31 2020 00:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34239 * 117.00020 * 2 1 4 4 O 1.20825 * 119.99597 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99706 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47022 * 60.00323 * 5 3 2 7 7 C 1.52996 * 109.47157 * 299.99880 * 5 3 2 8 8 C 1.53008 * 109.46706 * 180.02562 * 5 3 2 9 9 N 1.46502 * 109.46822 * 185.40265 * 8 5 3 10 10 C 1.46499 * 120.00243 * 86.69693 * 9 8 5 11 11 C 1.38827 * 119.99762 * 266.69665 * 9 8 5 12 12 C 1.39790 * 119.58752 * 180.86522 * 11 9 8 13 13 C 1.38588 * 119.49324 * 179.97438 * 12 11 9 14 14 C 1.38387 * 118.68271 * 359.97438 * 13 12 11 15 15 C 1.40555 * 119.14607 * 0.02562 * 14 13 12 16 16 C 1.41318 * 119.78381 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99417 * 357.78459 * 16 15 14 18 18 C 1.40023 * 119.99924 * 177.77470 * 16 15 14 19 19 N 1.30738 * 120.00072 * 2.59147 * 18 16 15 20 20 Si 1.86806 * 119.99703 * 182.58588 * 18 16 15 21 21 H 1.48504 * 109.47159 * 60.00304 * 20 18 16 22 22 H 1.48502 * 109.47004 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47433 * 300.00297 * 20 18 16 24 24 N 1.31956 * 119.58247 * 0.59172 * 11 9 8 25 25 H 1.08995 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47139 * 300.00024 * 1 2 3 27 27 H 1.09007 * 109.47288 * 59.99738 * 1 2 3 28 28 H 1.08992 * 109.47297 * 54.80004 * 7 5 3 29 29 H 1.09001 * 109.47005 * 174.80075 * 7 5 3 30 30 H 1.09000 * 109.47338 * 294.79828 * 7 5 3 31 31 H 1.08993 * 109.46861 * 65.39882 * 8 5 3 32 32 H 1.09000 * 109.46752 * 305.39524 * 8 5 3 33 33 H 1.09001 * 109.46953 * 89.99835 * 10 9 8 34 34 H 1.09001 * 109.47221 * 330.00100 * 10 9 8 35 35 H 1.08994 * 109.46997 * 209.99720 * 10 9 8 36 36 H 1.08004 * 120.25005 * 359.95224 * 12 11 9 37 37 H 1.08006 * 120.65983 * 180.02562 * 13 12 11 38 38 H 1.08005 * 120.42707 * 179.97438 * 14 13 12 39 39 H 0.97003 * 119.99707 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1128 0.5816 1.2502 8 6 4.0001 2.7422 0.0011 9 7 5.4573 2.8206 -0.1284 10 6 6.0757 2.8209 -1.4564 11 6 6.2520 2.8945 1.0075 12 6 7.6404 2.9873 0.8736 13 6 8.4319 3.0616 2.0088 14 6 7.8181 3.0419 3.2489 15 6 6.4175 2.9471 3.3180 16 6 5.7767 2.9254 4.5774 17 1 6.3649 2.9455 5.4830 18 6 4.3792 2.8781 4.6511 19 7 3.6690 2.8028 3.5560 20 14 3.5296 2.9223 6.3142 21 1 3.8835 4.1815 7.0175 22 1 2.0586 2.8597 6.1205 23 1 3.9713 1.7605 7.1269 24 7 5.6870 2.8818 2.1999 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.7282 -0.4371 1.2981 29 1 5.2016 0.5571 1.2052 30 1 3.7981 1.1309 2.1375 31 1 3.6925 3.2116 0.9354 32 1 3.5326 3.2595 -0.8367 33 1 6.1715 3.8467 -1.8123 34 1 5.4526 2.2533 -2.1476 35 1 7.0631 2.3631 -1.3975 36 1 8.0928 3.0007 -0.1071 37 1 9.5064 3.1342 1.9272 38 1 8.4078 3.0979 4.1520 39 1 2.7009 2.7697 3.6072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320365044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:42 Heat of formation + Delta-G solvation = -37.957134 kcal Electronic energy + Delta-G solvation = -22557.012840 eV Core-core repulsion = 19272.322642 eV Total energy + Delta-G solvation = -3284.690197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21431 -38.52632 -36.48889 -35.71442 -33.67702 -32.48685 -30.45676 -29.29884 -27.73214 -26.67794 -25.47171 -24.66105 -22.84707 -21.18724 -20.25865 -19.23732 -17.55253 -17.18100 -16.44635 -15.99814 -15.86894 -14.85931 -14.63251 -14.27217 -14.15593 -13.72080 -13.29047 -13.06434 -12.82650 -12.63223 -12.17778 -12.06641 -11.98923 -11.54190 -11.37190 -11.33224 -11.12121 -11.00464 -10.63566 -10.59227 -10.56681 -10.36066 -10.24886 -9.93821 -9.84888 -9.35299 -8.72588 -7.90139 -7.45852 -6.42857 -6.35285 -4.47392 2.59741 2.86353 2.99142 3.11477 3.13296 3.23216 3.30026 3.97908 4.04290 4.81413 5.13504 5.20009 5.27425 5.44499 5.55332 5.58722 5.66638 5.81238 5.88625 6.04083 6.12936 6.16563 6.32963 6.54283 6.58669 6.64100 6.73264 6.80484 6.87449 6.89556 7.13027 7.18056 7.54322 7.58447 7.82094 7.94339 7.98598 8.11469 8.36824 8.52081 8.80214 9.09525 10.21373 10.37322 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.008482 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.264724 B = 3300.385297 C = 5158.759931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.509 6.509 5 C -0.089 4.089 6 H 0.086 0.914 7 C -0.141 4.141 8 C 0.150 3.850 9 N -0.620 5.620 10 C 0.107 3.893 11 C 0.410 3.590 12 C -0.365 4.365 13 C -0.032 4.032 14 C -0.315 4.315 15 C 0.292 3.708 16 C -0.431 4.431 17 H 0.081 0.919 18 C 0.076 3.924 19 N -0.716 5.716 20 Si 0.902 3.098 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.266 1.266 24 N -0.522 5.522 25 H 0.095 0.905 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.036 0.964 29 H 0.064 0.936 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 -4.485 -6.840 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.396 6.396 5 C -0.110 4.110 6 H 0.104 0.896 7 C -0.198 4.198 8 C 0.025 3.975 9 N -0.337 5.337 10 C -0.038 4.038 11 C 0.172 3.828 12 C -0.391 4.391 13 C -0.056 4.056 14 C -0.338 4.338 15 C 0.165 3.835 16 C -0.463 4.463 17 H 0.099 0.901 18 C -0.149 4.149 19 N -0.338 5.338 20 Si 0.727 3.273 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.191 1.191 24 N -0.242 5.242 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.137 0.863 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.031 -4.244 -6.943 9.567 hybrid contribution 0.356 0.035 0.467 0.589 sum -4.675 -4.209 -6.476 9.028 Atomic orbital electron populations 1.23173 0.77372 1.03075 1.02286 1.86539 1.22655 1.34283 1.84410 1.24054 0.92218 0.80870 0.71291 1.90627 1.67303 1.36285 1.45407 1.21551 0.85547 1.01732 1.02131 0.89551 1.21945 1.01611 0.98355 0.97933 1.21099 0.80184 0.91665 1.04527 1.45929 1.04068 1.80957 1.02788 1.21423 0.98416 1.00054 0.83887 1.18475 0.86555 0.90179 0.87599 1.20638 0.92919 1.28176 0.97363 1.20584 0.96946 0.95274 0.92811 1.21542 0.96174 1.20214 0.95869 1.18191 0.87610 0.86543 0.91125 1.19512 0.91254 1.43318 0.92219 0.90096 1.25973 0.97988 0.93378 0.97512 1.69946 1.06469 1.29466 1.27941 0.86481 0.78280 0.79786 0.82774 1.19096 1.20391 1.19101 1.68261 1.36365 1.24753 0.94867 0.88630 0.92004 0.92348 0.94513 0.91750 0.86811 0.86299 0.92765 0.94467 0.92873 0.91618 0.88994 0.89010 0.88830 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.36 -5.74 10.37 -39.28 -0.41 -6.15 16 3 C 0.47 8.50 7.26 36.00 0.26 8.76 16 4 O -0.51 -10.16 15.66 -18.75 -0.29 -10.45 16 5 C -0.09 -1.60 3.03 -91.77 -0.28 -1.88 16 6 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 7 C -0.14 -2.84 7.84 37.16 0.29 -2.55 16 8 C 0.15 2.95 4.33 -4.04 -0.02 2.94 16 9 N -0.62 -12.34 2.81 -181.69 -0.51 -12.85 16 10 C 0.11 1.65 10.16 59.85 0.61 2.25 16 11 C 0.41 9.59 6.12 -155.32 -0.95 8.64 16 12 C -0.37 -8.17 9.24 -38.87 -0.36 -8.53 16 13 C -0.03 -0.72 10.15 -39.40 -0.40 -1.12 16 14 C -0.31 -7.73 9.83 -38.65 -0.38 -8.11 16 15 C 0.29 7.74 6.55 -85.00 -0.56 7.19 16 16 C -0.43 -11.16 9.13 -37.74 -0.34 -11.51 16 17 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 18 C 0.08 1.85 5.49 -17.35 -0.10 1.76 16 19 N -0.72 -17.81 8.81 55.55 0.49 -17.32 16 20 Si 0.90 18.41 29.56 -169.99 -5.02 13.39 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 N -0.52 -13.38 4.93 -10.33 -0.05 -13.43 16 25 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 27 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 28 H 0.04 0.66 7.99 -51.93 -0.41 0.25 16 29 H 0.06 1.41 6.75 -51.93 -0.35 1.06 16 30 H 0.11 2.61 5.34 -51.93 -0.28 2.33 16 31 H 0.12 2.80 6.85 -51.93 -0.36 2.44 16 32 H 0.05 0.99 7.90 -51.93 -0.41 0.58 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.69 8.07 -51.93 -0.42 0.27 16 35 H 0.07 0.99 6.18 -51.93 -0.32 0.67 16 36 H 0.09 1.83 6.13 -52.48 -0.32 1.51 16 37 H 0.09 1.79 8.06 -52.48 -0.42 1.36 16 38 H 0.09 2.16 8.06 -52.48 -0.42 1.73 16 39 H 0.27 6.37 8.29 -40.82 -0.34 6.03 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -28.49 321.31 -7.49 -35.98 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -5.37 Total: 6.65 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -1.16 Total: -0.66 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.07 Total: -43.60 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.70 Total: -16.60 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.49 -7.49 -35.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320365044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.978 kcal (2) G-P(sol) polarization free energy of solvation -28.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds