Wall clock time and date at job start Tue Mar 31 2020 00:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34239 * 117.00020 * 2 1 4 4 O 1.20825 * 119.99597 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99706 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47022 * 60.00323 * 5 3 2 7 7 C 1.52996 * 109.47157 * 299.99880 * 5 3 2 8 8 C 1.53008 * 109.46706 * 180.02562 * 5 3 2 9 9 N 1.46502 * 109.46822 * 185.40265 * 8 5 3 10 10 C 1.46499 * 120.00243 * 86.69693 * 9 8 5 11 11 C 1.38827 * 119.99762 * 266.69665 * 9 8 5 12 12 C 1.39790 * 119.58752 * 180.86522 * 11 9 8 13 13 C 1.38588 * 119.49324 * 179.97438 * 12 11 9 14 14 C 1.38387 * 118.68271 * 359.97438 * 13 12 11 15 15 C 1.40555 * 119.14607 * 0.02562 * 14 13 12 16 16 C 1.41318 * 119.78381 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99417 * 357.78459 * 16 15 14 18 18 C 1.40023 * 119.99924 * 177.77470 * 16 15 14 19 19 N 1.30738 * 120.00072 * 2.59147 * 18 16 15 20 20 Si 1.86806 * 119.99703 * 182.58588 * 18 16 15 21 21 H 1.48504 * 109.47159 * 60.00304 * 20 18 16 22 22 H 1.48502 * 109.47004 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47433 * 300.00297 * 20 18 16 24 24 N 1.31956 * 119.58247 * 0.59172 * 11 9 8 25 25 H 1.08995 * 109.47331 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47139 * 300.00024 * 1 2 3 27 27 H 1.09007 * 109.47288 * 59.99738 * 1 2 3 28 28 H 1.08992 * 109.47297 * 54.80004 * 7 5 3 29 29 H 1.09001 * 109.47005 * 174.80075 * 7 5 3 30 30 H 1.09000 * 109.47338 * 294.79828 * 7 5 3 31 31 H 1.08993 * 109.46861 * 65.39882 * 8 5 3 32 32 H 1.09000 * 109.46752 * 305.39524 * 8 5 3 33 33 H 1.09001 * 109.46953 * 89.99835 * 10 9 8 34 34 H 1.09001 * 109.47221 * 330.00100 * 10 9 8 35 35 H 1.08994 * 109.46997 * 209.99720 * 10 9 8 36 36 H 1.08004 * 120.25005 * 359.95224 * 12 11 9 37 37 H 1.08006 * 120.65983 * 180.02562 * 13 12 11 38 38 H 1.08005 * 120.42707 * 179.97438 * 14 13 12 39 39 H 0.97003 * 119.99707 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9563 0.7806 -0.8892 7 6 4.1128 0.5816 1.2502 8 6 4.0001 2.7422 0.0011 9 7 5.4573 2.8206 -0.1284 10 6 6.0757 2.8209 -1.4564 11 6 6.2520 2.8945 1.0075 12 6 7.6404 2.9873 0.8736 13 6 8.4319 3.0616 2.0088 14 6 7.8181 3.0419 3.2489 15 6 6.4175 2.9471 3.3180 16 6 5.7767 2.9254 4.5774 17 1 6.3649 2.9455 5.4830 18 6 4.3792 2.8781 4.6511 19 7 3.6690 2.8028 3.5560 20 14 3.5296 2.9223 6.3142 21 1 3.8835 4.1815 7.0175 22 1 2.0586 2.8597 6.1205 23 1 3.9713 1.7605 7.1269 24 7 5.6870 2.8818 2.1999 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 3.7282 -0.4371 1.2981 29 1 5.2016 0.5571 1.2052 30 1 3.7981 1.1309 2.1375 31 1 3.6925 3.2116 0.9354 32 1 3.5326 3.2595 -0.8367 33 1 6.1715 3.8467 -1.8123 34 1 5.4526 2.2533 -2.1476 35 1 7.0631 2.3631 -1.3975 36 1 8.0928 3.0007 -0.1071 37 1 9.5064 3.1342 1.9272 38 1 8.4078 3.0979 4.1520 39 1 2.7009 2.7697 3.6072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320365044.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:48:41 Heat of formation + Delta-G solvation = -52.063806 kcal Electronic energy + Delta-G solvation = -22557.624551 eV Core-core repulsion = 19272.322642 eV Total energy + Delta-G solvation = -3285.301909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.59496 -40.24091 -37.94412 -37.22114 -35.45243 -34.06096 -32.25247 -31.06848 -28.88105 -28.12528 -27.21366 -26.22862 -24.36380 -22.95604 -21.85388 -20.75708 -19.30226 -18.65282 -17.82616 -17.50862 -17.29923 -16.54293 -16.30137 -15.99135 -15.59386 -15.16984 -14.84165 -14.62390 -14.25102 -14.04282 -13.70543 -13.67172 -13.34769 -13.05147 -12.90808 -12.81338 -12.71524 -12.67253 -12.41723 -12.20659 -11.98537 -11.86664 -11.75300 -11.68565 -11.33218 -11.11764 -10.44178 -9.73086 -9.27831 -8.16834 -8.10969 -6.38639 1.10911 1.19203 1.40327 1.43185 1.52432 1.59783 1.74376 2.26677 2.55602 2.97471 3.75588 4.02650 4.04292 4.17345 4.30100 4.30889 4.33504 4.39235 4.50280 4.68230 4.70897 4.76539 4.86787 4.94523 5.02765 5.06574 5.07329 5.07757 5.17730 5.35282 5.37668 5.42851 5.79021 5.85973 6.04051 6.17283 6.20602 6.62850 6.72040 6.76836 6.96764 7.25898 8.38829 8.54257 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012490 B = 0.008482 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.264724 B = 3300.385297 C = 5158.759931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.477 3.523 4 O -0.534 6.534 5 C -0.081 4.081 6 H 0.115 0.885 7 C -0.129 4.129 8 C 0.155 3.845 9 N -0.620 5.620 10 C 0.101 3.899 11 C 0.393 3.607 12 C -0.366 4.366 13 C -0.031 4.031 14 C -0.344 4.344 15 C 0.261 3.739 16 C -0.465 4.465 17 H 0.080 0.920 18 C 0.037 3.963 19 N -0.732 5.732 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.274 1.274 23 H -0.261 1.261 24 N -0.539 5.539 25 H 0.133 0.867 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.096 0.904 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.044 -5.336 -8.287 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.321 3.679 4 O -0.424 6.424 5 C -0.101 4.101 6 H 0.133 0.867 7 C -0.186 4.186 8 C 0.030 3.970 9 N -0.337 5.337 10 C -0.042 4.042 11 C 0.154 3.846 12 C -0.391 4.391 13 C -0.056 4.056 14 C -0.367 4.367 15 C 0.134 3.866 16 C -0.497 4.497 17 H 0.098 0.902 18 C -0.186 4.186 19 N -0.354 5.354 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.198 1.198 23 H -0.185 1.185 24 N -0.260 5.260 25 H 0.151 0.849 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.431 -5.112 -8.432 11.257 hybrid contribution 0.482 0.270 0.787 0.961 sum -4.949 -4.842 -7.646 10.315 Atomic orbital electron populations 1.23537 0.75038 1.05624 1.02387 1.86508 1.24896 1.32859 1.83785 1.23906 0.92095 0.81138 0.70734 1.90618 1.67796 1.37235 1.46707 1.21392 0.86048 1.00514 1.02185 0.86678 1.21714 1.00064 0.98981 0.97889 1.20921 0.80365 0.92724 1.03007 1.46134 1.03964 1.80216 1.03391 1.21690 0.99107 1.01387 0.82009 1.18900 0.87712 0.89881 0.88082 1.21002 0.92652 1.26824 0.98663 1.20958 0.98713 0.93841 0.92059 1.21679 0.95821 1.22115 0.97112 1.18609 0.88797 0.87287 0.91895 1.19764 0.92404 1.45227 0.92346 0.90186 1.26686 0.98046 0.92842 1.00998 1.70086 1.06397 1.29387 1.29542 0.85430 0.77165 0.79715 0.78384 1.18990 1.19823 1.18550 1.68259 1.36914 1.25369 0.95493 0.84898 0.92746 0.91482 0.93037 0.93979 0.89672 0.90388 0.91268 0.93401 0.89892 0.90988 0.86129 0.85761 0.88543 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -10.84 10.37 -51.51 -0.53 -11.38 16 3 C 0.48 16.61 7.26 71.23 0.52 17.12 16 4 O -0.53 -21.04 15.66 21.97 0.34 -20.69 16 5 C -0.08 -2.81 3.03 -11.54 -0.03 -2.85 16 6 H 0.12 3.35 8.14 -2.38 -0.02 3.33 16 7 C -0.13 -5.19 7.84 71.98 0.56 -4.62 16 8 C 0.15 6.02 4.33 86.38 0.37 6.39 16 9 N -0.62 -23.94 2.81 -728.74 -2.05 -25.99 16 10 C 0.10 2.81 10.16 127.77 1.30 4.10 16 11 C 0.39 18.36 6.12 133.41 0.82 19.18 16 12 C -0.37 -15.90 9.24 22.73 0.21 -15.69 16 13 C -0.03 -1.39 10.15 22.39 0.23 -1.17 16 14 C -0.34 -17.25 9.83 22.87 0.22 -17.02 16 15 C 0.26 14.34 6.55 40.18 0.26 14.60 16 16 C -0.47 -25.07 9.13 23.46 0.21 -24.86 16 17 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 18 C 0.04 1.84 5.49 85.29 0.47 2.31 16 19 N -0.73 -37.67 8.81 21.84 0.19 -37.48 16 20 Si 0.97 38.62 29.56 68.60 2.03 40.64 16 21 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 22 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 23 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 24 N -0.54 -28.38 4.93 -186.59 -0.92 -29.30 16 25 H 0.13 1.88 8.14 -2.39 -0.02 1.87 16 26 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.07 1.36 8.13 -2.38 -0.02 1.34 16 28 H 0.05 1.84 7.99 -2.39 -0.02 1.82 16 29 H 0.04 1.85 6.75 -2.39 -0.02 1.83 16 30 H 0.08 4.00 5.34 -2.39 -0.01 3.99 16 31 H 0.08 3.76 6.85 -2.39 -0.02 3.74 16 32 H 0.07 2.45 7.90 -2.39 -0.02 2.43 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.83 8.07 -2.39 -0.02 1.81 16 35 H 0.07 1.93 6.18 -2.39 -0.01 1.91 16 36 H 0.12 4.45 6.13 -2.91 -0.02 4.43 16 37 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 39 H 0.27 13.15 8.29 -92.71 -0.77 12.38 16 Total: -1.00 -63.64 321.31 6.45 -57.19 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 1.05 Total: 27.71 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 6.34 Total: -0.71 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -2.78 Total: -92.76 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.19 Total: -32.07 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.64 kcal Total: -63.64 6.45 -57.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320365044.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.125 kcal (2) G-P(sol) polarization free energy of solvation -63.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds