Wall clock time and date at job start Tue Mar 31 2020 00:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46318 * 2 1 4 4 C 1.50697 * 109.47272 * 120.00226 * 2 1 3 5 5 O 1.21273 * 119.99763 * 120.00511 * 4 2 1 6 6 N 1.34775 * 119.99884 * 299.99918 * 4 2 1 7 7 C 1.46501 * 120.00087 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.47434 * 180.02562 * 7 6 4 9 9 H 1.08996 * 112.96475 * 306.68089 * 8 7 6 10 10 C 1.53940 * 113.77285 * 174.99707 * 8 7 6 11 11 C 1.53941 * 86.29379 * 222.09028 * 10 8 7 12 12 N 1.47579 * 86.11866 * 23.60749 * 11 10 8 13 13 C 1.36932 * 134.49540 * 155.35476 * 12 11 10 14 14 H 1.08005 * 119.99744 * 180.02562 * 13 12 11 15 15 C 1.38811 * 120.00139 * 0.02562 * 13 12 11 16 16 N 1.31620 * 119.99842 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00133 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46844 * 90.00050 * 17 15 13 19 19 H 1.48493 * 109.47113 * 210.00050 * 17 15 13 20 20 H 1.48499 * 109.47282 * 330.00420 * 17 15 13 21 21 C 1.50700 * 109.47386 * 240.00782 * 2 1 3 22 22 C 1.34507 * 125.79177 * 119.99378 * 21 2 1 23 23 C 1.41385 * 106.84104 * 179.97438 * 22 21 2 24 24 C 1.34515 * 106.84000 * 0.02562 * 23 22 21 25 25 O 1.34300 * 125.78413 * 299.96900 * 21 2 1 26 26 H 1.09000 * 109.47376 * 299.99468 * 1 2 3 27 27 H 1.09000 * 109.47014 * 60.00205 * 1 2 3 28 28 H 1.09007 * 109.46574 * 179.97438 * 1 2 3 29 29 H 0.97005 * 120.00183 * 0.02562 * 6 4 2 30 30 H 1.09001 * 109.46937 * 300.00317 * 7 6 4 31 31 H 1.08998 * 109.46995 * 60.00196 * 7 6 4 32 32 H 1.09007 * 113.74158 * 336.43969 * 10 8 7 33 33 H 1.09002 * 113.74388 * 107.63768 * 10 8 7 34 34 H 1.09001 * 113.76687 * 137.90525 * 11 10 8 35 35 H 1.08996 * 113.77194 * 269.19097 * 11 10 8 36 36 H 0.97002 * 120.00111 * 179.97438 * 16 15 13 37 37 H 1.07995 * 126.58208 * 0.02562 * 22 21 2 38 38 H 1.08001 * 126.58267 * 179.73335 * 23 22 21 39 39 H 1.07996 * 125.79067 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1190 6 7 1.7068 -0.2500 2.4545 7 6 2.1956 -0.9403 3.6507 8 6 1.6850 -0.2196 4.8999 9 1 1.9170 0.8454 4.9011 10 6 2.0400 -0.9334 6.2168 11 6 0.6061 -0.6007 6.6673 12 7 0.2794 -0.5249 5.2302 13 6 -0.8674 -0.6770 4.4974 14 1 -0.8402 -0.5679 3.4232 15 6 -2.0647 -0.9712 5.1351 16 7 -2.0977 -1.1045 6.4441 17 14 -3.6292 -1.1779 4.1355 18 1 -3.7781 -2.6010 3.7380 19 1 -4.7978 -0.7679 4.9547 20 1 -3.5551 -0.3294 2.9191 21 6 2.0324 -0.7102 -1.2305 22 6 2.8089 -0.1717 -2.1878 23 6 3.0388 -1.1847 -3.1468 24 6 2.3885 -2.2816 -2.7186 25 8 1.7811 -1.9885 -1.5571 26 1 -0.3634 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 1.1488 0.5385 2.5436 30 1 1.8327 -1.9681 3.6508 31 1 3.2856 -0.9398 3.6505 32 1 2.2270 -2.0011 6.1007 33 1 2.8124 -0.4274 6.7960 34 1 0.1084 -1.4185 7.1885 35 1 0.5197 0.3518 7.1902 36 1 -2.9344 -1.3097 6.8898 37 1 3.1853 0.8401 -2.2176 38 1 3.6205 -1.0939 -4.0522 39 1 2.3599 -3.2361 -3.2230 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323301802.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:26 Heat of formation + Delta-G solvation = 29.746046 kcal Electronic energy + Delta-G solvation = -21743.539568 eV Core-core repulsion = 18461.785200 eV Total energy + Delta-G solvation = -3281.754367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52976 -39.49204 -37.92973 -34.25293 -33.93143 -32.79388 -32.17669 -28.77007 -27.97300 -27.51712 -24.48099 -23.37959 -22.27259 -21.71923 -20.87541 -19.80866 -19.06113 -17.61569 -16.94455 -16.43631 -15.76254 -15.74015 -15.25505 -14.78785 -14.44032 -14.10952 -13.71424 -13.50812 -13.17322 -12.93542 -12.77329 -12.63563 -12.32047 -11.90056 -11.63509 -11.53672 -11.41122 -11.10693 -11.02387 -10.76499 -10.54997 -10.02543 -9.87366 -9.77196 -9.63232 -9.33551 -8.81493 -8.60300 -8.42294 -6.90939 -5.77887 -3.10390 1.78504 2.62190 2.87817 3.04656 3.36684 3.40903 3.43744 3.55448 4.41268 4.49841 4.83496 4.96254 4.99089 5.09692 5.13808 5.21422 5.38611 5.60696 5.62121 5.69952 5.72654 5.83477 5.89781 5.90879 6.06810 6.07711 6.20914 6.31061 6.39516 6.51205 6.61017 6.70125 6.86862 7.21735 7.23452 7.39811 7.57968 7.84655 7.96969 8.51762 9.02622 9.69729 10.58051 11.38867 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019512 B = 0.004887 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.675961 B = 5728.278594 C = 6766.076280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.032 4.032 3 H 0.122 0.878 4 C 0.513 3.487 5 O -0.538 6.538 6 N -0.711 5.711 7 C 0.124 3.876 8 C 0.126 3.874 9 H 0.050 0.950 10 C -0.156 4.156 11 C 0.159 3.841 12 N -0.602 5.602 13 C -0.219 4.219 14 H 0.079 0.921 15 C -0.007 4.007 16 N -0.919 5.919 17 Si 0.906 3.094 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.281 1.281 21 C 0.023 3.977 22 C -0.214 4.214 23 C -0.218 4.218 24 C -0.041 4.041 25 O -0.158 6.158 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.403 0.597 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.253 0.747 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.841 3.795 -13.041 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.053 4.053 3 H 0.140 0.860 4 C 0.297 3.703 5 O -0.415 6.415 6 N -0.362 5.362 7 C -0.001 4.001 8 C 0.018 3.982 9 H 0.067 0.933 10 C -0.195 4.195 11 C 0.034 3.966 12 N -0.328 5.328 13 C -0.347 4.347 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.566 5.566 17 Si 0.737 3.263 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.028 4.028 22 C -0.233 4.233 23 C -0.237 4.237 24 C -0.109 4.109 25 O -0.052 6.052 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.237 0.763 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.063 0.937 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 8.805 2.818 -12.951 15.913 hybrid contribution -1.057 0.453 -0.670 1.331 sum 7.748 3.271 -13.621 16.008 Atomic orbital electron populations 1.21835 0.91057 1.04068 1.03511 1.19931 0.98423 0.99040 0.87906 0.85990 1.20261 0.80699 0.84848 0.84453 1.90704 1.38137 1.25986 1.86704 1.45920 1.52839 1.32048 1.05352 1.21769 0.97480 0.97519 0.83320 1.22504 0.87268 0.96239 0.92166 0.93297 1.23774 0.99035 1.00260 0.96421 1.22190 0.88324 0.98794 0.87324 1.46064 1.02389 1.81499 1.02894 1.18931 0.84562 1.41156 0.90010 0.90347 1.24751 0.97510 1.02359 0.95702 1.69816 1.25623 1.54370 1.06831 0.86219 0.83321 0.77948 0.78855 1.21589 1.21694 1.20703 1.21620 1.01224 0.82686 0.97303 1.21490 1.04231 1.01303 0.96321 1.21732 1.05930 0.93654 1.02365 1.24006 0.99239 1.00728 0.86945 1.84062 1.58769 1.27641 1.34773 0.90429 0.91129 0.91270 0.76274 0.90960 0.92201 0.90530 0.92815 0.90844 0.95573 0.93697 0.83648 0.83683 0.78383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.07 37.16 0.34 -1.51 16 2 C -0.03 -0.42 3.13 -92.92 -0.29 -0.71 16 3 H 0.12 1.21 8.10 -51.93 -0.42 0.79 16 4 C 0.51 8.66 7.15 -10.99 -0.08 8.58 16 5 O -0.54 -11.18 15.80 -1.30 -0.02 -11.20 16 6 N -0.71 -11.68 5.42 -60.30 -0.33 -12.00 16 7 C 0.12 2.22 5.54 -4.04 -0.02 2.20 16 8 C 0.13 2.37 4.33 -66.86 -0.29 2.08 16 9 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 10 C -0.16 -2.82 7.86 -25.81 -0.20 -3.02 16 11 C 0.16 3.60 7.51 -2.98 -0.02 3.58 16 12 N -0.60 -14.40 3.57 -170.76 -0.61 -15.01 16 13 C -0.22 -5.76 10.51 -15.06 -0.16 -5.92 16 14 H 0.08 1.96 7.80 -52.48 -0.41 1.55 16 15 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 16 N -0.92 -26.70 11.38 55.49 0.63 -26.07 16 17 Si 0.91 21.74 29.55 -169.99 -5.02 16.72 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.02 0.33 5.20 -35.63 -0.19 0.15 16 22 C -0.21 -2.69 10.78 -39.70 -0.43 -3.12 16 23 C -0.22 -2.53 10.91 -39.70 -0.43 -2.96 16 24 C -0.04 -0.50 12.09 29.42 0.36 -0.15 16 25 O -0.16 -2.49 10.35 -1.16 -0.01 -2.50 16 26 H 0.08 0.95 7.56 -51.93 -0.39 0.56 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 29 H 0.40 6.06 7.89 -40.82 -0.32 5.73 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.15 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.20 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -33.31 333.07 -7.56 -40.86 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.70 Total: 5.26 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.51 Total: -1.08 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.31 Total: -53.08 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.03 Total: -13.70 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.31 -7.56 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323301802.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.609 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds