Wall clock time and date at job start Tue Mar 31 2020 00:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47102 * 239.99555 * 2 1 3 5 5 O 1.21280 * 119.99838 * 240.00312 * 4 2 1 6 6 N 1.34780 * 119.99998 * 60.00694 * 4 2 1 7 7 C 1.46500 * 119.99871 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46786 * 179.97438 * 7 6 4 9 9 H 1.08997 * 112.78530 * 303.72872 * 8 7 6 10 10 C 1.53499 * 113.46472 * 172.93553 * 8 7 6 11 11 C 1.53749 * 83.25991 * 218.98716 * 10 8 7 12 12 N 1.47072 * 113.46180 * 74.50654 * 8 7 6 13 13 C 1.36931 * 136.06174 * 321.86155 * 12 8 7 14 14 H 1.08002 * 120.00103 * 0.02562 * 13 12 8 15 15 C 1.38812 * 120.00429 * 180.02562 * 13 12 8 16 16 N 1.31624 * 119.99535 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00542 * 17 15 13 20 20 H 1.48504 * 109.46636 * 60.00101 * 17 15 13 21 21 C 1.50705 * 109.46724 * 119.99523 * 2 1 3 22 22 C 1.34507 * 125.79180 * 239.71499 * 21 2 1 23 23 C 1.41380 * 106.84335 * 179.89423 * 22 21 2 24 24 C 1.34514 * 106.83874 * 0.37280 * 23 22 21 25 25 O 1.34298 * 108.41935 * 359.77257 * 24 23 22 26 26 H 1.09001 * 109.47586 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47535 * 300.00630 * 1 2 3 28 28 H 1.09003 * 109.47057 * 60.00110 * 1 2 3 29 29 H 0.97001 * 119.99969 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.46704 * 59.99925 * 7 6 4 31 31 H 1.08998 * 109.46915 * 299.99782 * 7 6 4 32 32 H 1.09000 * 114.20984 * 332.74702 * 10 8 7 33 33 H 1.09004 * 114.19718 * 105.37227 * 10 8 7 34 34 H 1.09004 * 113.47201 * 271.50865 * 11 10 8 35 35 H 1.09001 * 113.55046 * 140.98942 * 11 10 8 36 36 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 37 37 H 1.08008 * 126.58012 * 0.02824 * 22 21 2 38 38 H 1.07995 * 126.58064 * 180.12154 * 23 22 21 39 39 H 1.08002 * 125.78862 * 179.79505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9404 -3.6507 8 6 1.6851 -0.2196 -4.8999 9 1 0.5989 -0.1318 -4.9224 10 6 2.2818 -0.7627 -6.2057 11 6 2.3020 0.7226 -6.6022 12 7 2.3807 1.0478 -5.1700 13 6 2.8776 2.0794 -4.4191 14 1 2.7886 2.0557 -3.3430 15 6 3.4957 3.1556 -5.0407 16 7 3.6037 3.1847 -6.3522 17 14 4.1729 4.5632 -4.0163 18 1 4.7786 5.5808 -4.9122 19 1 3.0711 5.1832 -3.2373 20 1 5.2068 4.0447 -3.0849 21 6 2.0322 -0.7103 1.2306 22 6 2.8132 -0.1735 2.1851 23 6 3.0385 -1.1849 3.1469 24 6 2.3886 -2.2819 2.7183 25 8 1.7809 -1.9886 1.5572 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.1489 0.5385 -2.5436 30 1 1.8326 -1.9682 -3.6507 31 1 3.2856 -0.9400 -3.6504 32 1 3.2685 -1.2121 -6.0934 33 1 1.5943 -1.3733 -6.7911 34 1 1.3783 1.0588 -7.0735 35 1 3.1911 1.0118 -7.1625 36 1 4.0353 3.9370 -6.7867 37 1 3.1932 0.8371 2.2128 38 1 3.6238 -1.0954 4.0501 39 1 2.3599 -3.2365 3.2227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323301803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:29 Heat of formation + Delta-G solvation = 33.356550 kcal Electronic energy + Delta-G solvation = -21680.053987 eV Core-core repulsion = 18398.456183 eV Total energy + Delta-G solvation = -3281.597804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.52818 -39.50830 -38.10287 -34.26134 -33.92428 -32.79436 -32.22631 -28.77662 -28.05495 -27.48163 -24.50734 -23.49423 -22.13877 -21.71183 -20.85104 -19.80205 -19.18793 -17.61597 -16.95793 -16.43127 -15.74181 -15.71370 -15.37840 -14.78737 -14.41985 -13.95384 -13.87667 -13.53328 -13.15163 -12.94172 -12.75932 -12.64396 -12.39056 -11.92516 -11.71166 -11.59899 -11.48032 -11.13008 -10.99413 -10.79173 -10.60956 -10.02130 -9.86583 -9.86178 -9.60904 -9.21716 -8.84077 -8.57713 -8.41895 -6.93093 -5.79856 -3.12669 1.78055 2.63682 2.90088 3.04000 3.35259 3.39957 3.41698 3.55002 4.40194 4.49243 4.82446 4.91811 5.01259 5.10715 5.17216 5.26469 5.37548 5.52035 5.54252 5.62733 5.72102 5.83455 5.89853 5.90396 5.97564 6.09211 6.14593 6.31279 6.38496 6.52385 6.58126 6.70156 6.87225 7.19604 7.20971 7.36758 7.54720 7.86294 7.94352 8.53015 8.99338 9.67016 10.60048 11.37213 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.004819 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.604259 B = 5809.475057 C = 6818.587843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.034 4.034 3 H 0.126 0.874 4 C 0.513 3.487 5 O -0.539 6.539 6 N -0.710 5.710 7 C 0.122 3.878 8 C 0.127 3.873 9 H 0.048 0.952 10 C -0.161 4.161 11 C 0.151 3.849 12 N -0.601 5.601 13 C -0.216 4.216 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.021 3.979 22 C -0.211 4.211 23 C -0.216 4.216 24 C -0.043 4.043 25 O -0.160 6.160 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.403 0.597 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.254 0.746 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 -7.601 12.810 16.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.055 4.055 3 H 0.143 0.857 4 C 0.298 3.702 5 O -0.416 6.416 6 N -0.361 5.361 7 C -0.002 4.002 8 C 0.019 3.981 9 H 0.066 0.934 10 C -0.200 4.200 11 C 0.026 3.974 12 N -0.327 5.327 13 C -0.343 4.343 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.738 3.262 18 H -0.215 1.215 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.030 4.030 22 C -0.230 4.230 23 C -0.235 4.235 24 C -0.111 4.111 25 O -0.055 6.055 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.238 0.762 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.165 0.835 38 H 0.163 0.837 39 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -6.028 -8.168 12.734 16.285 hybrid contribution 0.300 1.424 0.672 1.603 sum -5.727 -6.744 13.406 16.062 Atomic orbital electron populations 1.21795 0.91458 1.03430 1.03399 1.19948 0.98133 0.99521 0.87917 0.85652 1.20245 0.80717 0.84815 0.84449 1.90704 1.37797 1.26391 1.86711 1.45921 1.52979 1.31875 1.05315 1.21813 1.00009 0.94935 0.83470 1.22420 0.95621 0.88018 0.92018 0.93440 1.23704 1.00431 0.98905 0.96973 1.22082 0.99712 0.87687 0.87935 1.45686 1.64773 1.19446 1.02809 1.18787 1.30216 0.95882 0.89397 0.90292 1.24773 1.01318 0.98463 0.95753 1.69818 1.47922 1.31651 1.07068 0.86268 0.78872 0.82032 0.79007 1.21520 1.21181 1.21103 1.21594 1.01474 0.82619 0.97298 1.21550 1.03738 1.01531 0.96224 1.21747 1.05711 0.93678 1.02332 1.23975 0.99579 1.00645 0.86937 1.84021 1.59007 1.27647 1.34852 0.91566 0.91045 0.90829 0.76199 0.92296 0.91095 0.90212 0.92368 0.95742 0.90934 0.93606 0.83528 0.83659 0.78382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.07 37.16 0.34 -1.17 16 2 C -0.03 -0.45 3.13 -92.92 -0.29 -0.74 16 3 H 0.13 1.47 8.10 -51.93 -0.42 1.05 16 4 C 0.51 8.75 7.15 -10.99 -0.08 8.67 16 5 O -0.54 -11.25 15.80 -1.30 -0.02 -11.28 16 6 N -0.71 -11.82 5.23 -60.29 -0.32 -12.14 16 7 C 0.12 2.21 5.52 -4.04 -0.02 2.18 16 8 C 0.13 2.40 4.10 -72.39 -0.30 2.10 16 9 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 10 C -0.16 -2.91 8.04 -26.08 -0.21 -3.12 16 11 C 0.15 3.42 7.41 -8.37 -0.06 3.36 16 12 N -0.60 -14.39 3.65 -176.82 -0.65 -15.03 16 13 C -0.22 -5.66 10.55 -15.06 -0.16 -5.82 16 14 H 0.08 1.96 7.50 -52.49 -0.39 1.57 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 16 N -0.92 -26.63 11.50 55.49 0.64 -25.99 16 17 Si 0.91 21.61 29.55 -169.99 -5.02 16.58 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.02 0.31 5.20 -35.62 -0.19 0.13 16 22 C -0.21 -2.82 10.78 -39.71 -0.43 -3.24 16 23 C -0.22 -2.57 10.91 -39.70 -0.43 -3.00 16 24 C -0.04 -0.52 12.09 29.42 0.36 -0.16 16 25 O -0.16 -2.41 10.35 -1.13 -0.01 -2.43 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.69 7.56 -51.93 -0.39 0.30 16 29 H 0.40 6.21 7.79 -40.82 -0.32 5.90 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.45 8.12 -51.93 -0.42 1.02 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 1.84 7.11 -51.93 -0.37 1.47 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.20 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 332.52 15.07 5.01 5.01 Total: -1.00 -33.23 332.52 -7.61 -40.85 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.68 Total: 5.51 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.57 Total: -1.09 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.32 Total: -53.16 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.03 Total: -13.70 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.23 -7.61 -40.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323301803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.202 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds