Wall clock time and date at job start Tue Mar 31 2020 00:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.50697 * 109.47102 * 239.99555 * 2 1 3 5 5 O 1.21280 * 119.99838 * 240.00312 * 4 2 1 6 6 N 1.34780 * 119.99998 * 60.00694 * 4 2 1 7 7 C 1.46500 * 119.99871 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.46786 * 179.97438 * 7 6 4 9 9 H 1.08997 * 112.78530 * 303.72872 * 8 7 6 10 10 C 1.53499 * 113.46472 * 172.93553 * 8 7 6 11 11 C 1.53749 * 83.25991 * 218.98716 * 10 8 7 12 12 N 1.47072 * 113.46180 * 74.50654 * 8 7 6 13 13 C 1.36931 * 136.06174 * 321.86155 * 12 8 7 14 14 H 1.08002 * 120.00103 * 0.02562 * 13 12 8 15 15 C 1.38812 * 120.00429 * 180.02562 * 13 12 8 16 16 N 1.31624 * 119.99535 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00542 * 17 15 13 20 20 H 1.48504 * 109.46636 * 60.00101 * 17 15 13 21 21 C 1.50705 * 109.46724 * 119.99523 * 2 1 3 22 22 C 1.34507 * 125.79180 * 239.71499 * 21 2 1 23 23 C 1.41380 * 106.84335 * 179.89423 * 22 21 2 24 24 C 1.34514 * 106.83874 * 0.37280 * 23 22 21 25 25 O 1.34298 * 108.41935 * 359.77257 * 24 23 22 26 26 H 1.09001 * 109.47586 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47535 * 300.00630 * 1 2 3 28 28 H 1.09003 * 109.47057 * 60.00110 * 1 2 3 29 29 H 0.97001 * 119.99969 * 359.97438 * 6 4 2 30 30 H 1.09001 * 109.46704 * 59.99925 * 7 6 4 31 31 H 1.08998 * 109.46915 * 299.99782 * 7 6 4 32 32 H 1.09000 * 114.20984 * 332.74702 * 10 8 7 33 33 H 1.09004 * 114.19718 * 105.37227 * 10 8 7 34 34 H 1.09004 * 113.47201 * 271.50865 * 11 10 8 35 35 H 1.09001 * 113.55046 * 140.98942 * 11 10 8 36 36 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 37 37 H 1.08008 * 126.58012 * 0.02824 * 22 21 2 38 38 H 1.07995 * 126.58064 * 180.12154 * 23 22 21 39 39 H 1.08002 * 125.78862 * 179.79505 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.7295 -1.6966 -1.1190 6 7 1.7068 -0.2500 -2.4546 7 6 2.1956 -0.9404 -3.6507 8 6 1.6851 -0.2196 -4.8999 9 1 0.5989 -0.1318 -4.9224 10 6 2.2818 -0.7627 -6.2057 11 6 2.3020 0.7226 -6.6022 12 7 2.3807 1.0478 -5.1700 13 6 2.8776 2.0794 -4.4191 14 1 2.7886 2.0557 -3.3430 15 6 3.4957 3.1556 -5.0407 16 7 3.6037 3.1847 -6.3522 17 14 4.1729 4.5632 -4.0163 18 1 4.7786 5.5808 -4.9122 19 1 3.0711 5.1832 -3.2373 20 1 5.2068 4.0447 -3.0849 21 6 2.0322 -0.7103 1.2306 22 6 2.8132 -0.1735 2.1851 23 6 3.0385 -1.1849 3.1469 24 6 2.3886 -2.2819 2.7183 25 8 1.7809 -1.9886 1.5572 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.1489 0.5385 -2.5436 30 1 1.8326 -1.9682 -3.6507 31 1 3.2856 -0.9400 -3.6504 32 1 3.2685 -1.2121 -6.0934 33 1 1.5943 -1.3733 -6.7911 34 1 1.3783 1.0588 -7.0735 35 1 3.1911 1.0118 -7.1625 36 1 4.0353 3.9370 -6.7867 37 1 3.1932 0.8371 2.2128 38 1 3.6238 -1.0954 4.0501 39 1 2.3599 -3.2365 3.2227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323301803.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:28:29 Heat of formation + Delta-G solvation = 11.578806 kcal Electronic energy + Delta-G solvation = -21680.998341 eV Core-core repulsion = 18398.456183 eV Total energy + Delta-G solvation = -3282.542158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.50252 -40.90178 -39.72403 -35.60057 -35.11818 -34.19786 -33.74662 -30.02040 -29.73455 -28.86312 -25.56535 -25.37053 -23.62828 -22.68159 -22.05592 -21.17362 -20.69112 -18.92649 -18.34158 -17.80498 -17.11069 -17.00749 -16.75913 -16.33937 -15.78631 -15.50190 -15.15919 -15.03425 -14.51468 -14.27568 -13.69863 -13.64931 -13.50836 -13.38616 -13.24804 -12.92761 -12.68021 -12.61901 -12.60671 -12.50581 -12.33656 -11.83104 -11.62659 -11.20356 -10.85798 -10.81754 -10.70117 -10.02275 -9.38398 -8.87404 -7.85048 -5.16917 0.79841 1.45925 1.48791 1.53977 1.59155 1.70082 2.11295 2.27723 2.49733 3.36896 3.44865 3.54994 3.72782 3.95099 3.98627 4.11523 4.16836 4.22410 4.33184 4.35829 4.63925 4.69495 4.73965 4.78165 4.88473 4.95117 5.01638 5.06567 5.10571 5.12741 5.25397 5.34486 5.45260 5.60585 5.63236 5.75287 5.98899 6.25216 6.54386 6.95370 7.21281 7.66647 8.66229 9.32464 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.004819 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.604259 B = 5809.475057 C = 6818.587843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 H 0.142 0.858 4 C 0.511 3.489 5 O -0.582 6.582 6 N -0.706 5.706 7 C 0.131 3.869 8 C 0.135 3.865 9 H 0.073 0.927 10 C -0.136 4.136 11 C 0.143 3.857 12 N -0.629 5.629 13 C -0.208 4.208 14 H 0.090 0.910 15 C -0.071 4.071 16 N -0.955 5.955 17 Si 0.967 3.033 18 H -0.300 1.300 19 H -0.270 1.270 20 H -0.284 1.284 21 C -0.008 4.008 22 C -0.220 4.220 23 C -0.225 4.225 24 C -0.047 4.047 25 O -0.185 6.185 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.411 0.589 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.024 0.976 35 H 0.035 0.965 36 H 0.244 0.756 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.737 -8.134 14.627 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.050 4.050 3 H 0.160 0.840 4 C 0.298 3.702 5 O -0.462 6.462 6 N -0.357 5.357 7 C 0.006 3.994 8 C 0.028 3.972 9 H 0.090 0.910 10 C -0.175 4.175 11 C 0.017 3.983 12 N -0.355 5.355 13 C -0.336 4.336 14 H 0.108 0.892 15 C -0.264 4.264 16 N -0.604 5.604 17 Si 0.796 3.204 18 H -0.227 1.227 19 H -0.196 1.196 20 H -0.211 1.211 21 C -0.058 4.058 22 C -0.239 4.239 23 C -0.244 4.244 24 C -0.115 4.115 25 O -0.081 6.081 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.105 0.895 29 H 0.247 0.753 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.042 0.958 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -7.267 -8.710 14.575 18.469 hybrid contribution 0.668 1.487 0.146 1.636 sum -6.599 -7.223 14.720 17.675 Atomic orbital electron populations 1.21791 0.89278 1.03344 1.04962 1.20011 0.99865 0.99505 0.85618 0.84008 1.20915 0.79714 0.84279 0.85340 1.90677 1.39742 1.28433 1.87343 1.45885 1.52799 1.31961 1.05023 1.21587 0.98078 0.95919 0.83827 1.22557 0.96334 0.85511 0.92757 0.91011 1.23530 1.01293 0.96332 0.96354 1.22092 0.97968 0.91012 0.87219 1.46003 1.65513 1.20364 1.03598 1.19200 1.28379 0.95832 0.90213 0.89241 1.25540 1.02928 1.01199 0.96708 1.70011 1.49832 1.32013 1.08583 0.85310 0.78414 0.79194 0.77436 1.22663 1.19586 1.21069 1.21870 1.02857 0.82908 0.98199 1.21917 1.03101 1.02529 0.96365 1.22128 1.05981 0.93262 1.03039 1.24790 0.98518 1.02156 0.85993 1.84001 1.59864 1.28089 1.36160 0.92461 0.89155 0.89547 0.75315 0.90568 0.94269 0.90518 0.88255 0.95820 0.94669 0.94657 0.82217 0.81177 0.74942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.07 71.98 0.65 -1.92 16 2 C -0.03 -0.73 3.13 -12.29 -0.04 -0.77 16 3 H 0.14 3.02 8.10 -2.39 -0.02 3.00 16 4 C 0.51 16.90 7.15 87.66 0.63 17.53 16 5 O -0.58 -24.22 15.80 3.53 0.06 -24.16 16 6 N -0.71 -22.40 5.23 -463.06 -2.42 -24.82 16 7 C 0.13 4.54 5.52 86.38 0.48 5.01 16 8 C 0.13 4.81 4.10 41.79 0.17 4.99 16 9 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 10 C -0.14 -4.65 8.04 31.01 0.25 -4.40 16 11 C 0.14 6.44 7.41 83.26 0.62 7.06 16 12 N -0.63 -29.75 3.65 -713.34 -2.60 -32.35 16 13 C -0.21 -10.85 10.55 84.03 0.89 -9.96 16 14 H 0.09 4.34 7.50 -2.91 -0.02 4.32 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 16 N -0.95 -56.88 11.50 21.65 0.25 -56.63 16 17 Si 0.97 44.71 29.55 68.60 2.03 46.74 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 21 C -0.01 -0.22 5.20 24.83 0.13 -0.09 16 22 C -0.22 -5.52 10.78 22.19 0.24 -5.29 16 23 C -0.23 -4.92 10.91 22.19 0.24 -4.68 16 24 C -0.05 -1.05 12.09 66.97 0.81 -0.24 16 25 O -0.19 -5.40 10.35 4.13 0.04 -5.36 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 1.38 7.56 -2.39 -0.02 1.37 16 29 H 0.41 11.77 7.79 -92.71 -0.72 11.05 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 33 H 0.10 2.62 8.14 -2.38 -0.02 2.60 16 34 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.03 1.84 7.11 -2.39 -0.02 1.82 16 36 H 0.24 14.37 8.31 -92.70 -0.77 13.60 16 37 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 39 H 0.23 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -73.46 332.52 3.21 -70.25 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.33 Total: 22.55 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 5.53 Total: 3.78 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -4.77 Total: -113.80 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: 0.10 Total: -29.53 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -73.46 3.21 -70.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323301803.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.829 kcal (2) G-P(sol) polarization free energy of solvation -73.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds