Wall clock time and date at job start Tue Mar 31 2020 00:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47195 * 2 1 4 4 C 1.50699 * 109.47395 * 240.00094 * 2 1 3 5 5 H 1.08000 * 120.00416 * 240.00423 * 4 2 1 6 6 C 1.37877 * 119.99910 * 59.99898 * 4 2 1 7 7 N 1.31516 * 120.00088 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46993 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46804 * 299.99803 * 8 6 4 11 11 H 1.48498 * 109.47256 * 59.99868 * 8 6 4 12 12 C 1.50708 * 109.47525 * 120.00220 * 2 1 3 13 13 O 1.20825 * 120.00160 * 119.99715 * 12 2 1 14 14 O 1.34224 * 119.99508 * 300.00529 * 12 2 1 15 15 C 1.45199 * 117.00014 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47664 * 179.97438 * 15 14 12 17 17 C 1.38890 * 120.74411 * 89.99696 * 16 15 14 18 18 C 1.38022 * 119.32622 * 179.97438 * 17 16 15 19 19 N 1.31966 * 120.86076 * 0.02562 * 18 17 16 20 20 C 1.32402 * 121.62406 * 359.97438 * 19 18 17 21 21 N 1.38998 * 119.70797 * 180.02562 * 20 19 18 22 22 C 1.46503 * 119.99692 * 171.76999 * 21 20 19 23 23 C 1.46498 * 120.00038 * 351.76913 * 21 20 19 24 24 C 1.38296 * 120.75186 * 269.72094 * 16 15 14 25 25 H 1.08995 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46971 * 299.99693 * 1 2 3 27 27 H 1.08999 * 109.46828 * 60.00158 * 1 2 3 28 28 H 0.97005 * 120.00428 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47229 * 299.99958 * 15 14 12 30 30 H 1.09010 * 109.46948 * 59.99141 * 15 14 12 31 31 H 1.07998 * 120.33552 * 0.02562 * 17 16 15 32 32 H 1.08003 * 119.56547 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47531 * 354.56132 * 22 21 20 34 34 H 1.09000 * 109.46708 * 114.56185 * 22 21 20 35 35 H 1.09002 * 109.47068 * 234.55587 * 22 21 20 36 36 H 1.09000 * 109.47122 * 90.00196 * 23 21 20 37 37 H 1.09004 * 109.47077 * 210.00252 * 23 21 20 38 38 H 1.08999 * 109.46711 * 329.99845 * 23 21 20 39 39 H 1.08004 * 120.44786 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8065 -1.1207 -4.0082 11 1 1.8260 -2.5201 -4.0079 12 6 2.0324 -0.7105 1.2305 13 8 2.7271 -1.6928 1.1196 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9864 3.5896 16 6 1.7629 -0.3293 4.8639 17 6 0.5692 -0.7082 5.4644 18 6 0.1726 -0.0872 6.6315 19 7 0.9117 0.8585 7.1800 20 6 2.0555 1.2475 6.6383 21 7 2.8027 2.2472 7.2502 22 6 4.1488 2.5580 6.7626 23 6 2.2441 2.9900 8.3827 24 6 2.5189 0.6606 5.4649 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7095 1.1619 -3.4844 29 1 1.8627 -2.0133 3.5565 30 1 3.3164 -0.9861 3.5568 31 1 -0.0420 -1.4815 5.0230 32 1 -0.7551 -0.3786 7.1015 33 1 4.4277 1.8452 5.9866 34 1 4.1620 3.5671 6.3508 35 1 4.8581 2.4929 7.5877 36 1 2.5005 2.4819 9.3124 37 1 2.6565 3.9989 8.3943 38 1 1.1599 3.0417 8.2839 39 1 3.4546 0.9762 5.0276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327503225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:38 Heat of formation + Delta-G solvation = -39.979858 kcal Electronic energy + Delta-G solvation = -21020.790447 eV Core-core repulsion = 17736.012537 eV Total energy + Delta-G solvation = -3284.777909 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45407 -39.49376 -36.77901 -35.80579 -33.89665 -33.13536 -30.61692 -30.49197 -28.64672 -26.91205 -25.24652 -25.20499 -23.16094 -22.53906 -20.80737 -19.81473 -17.40326 -16.90184 -16.68176 -16.05236 -15.74433 -15.63832 -15.45376 -15.28398 -14.62963 -14.31311 -14.11661 -13.50568 -13.04532 -12.88391 -12.74498 -12.56447 -12.38382 -12.22076 -11.88667 -11.62699 -11.48296 -11.04848 -10.82130 -10.70416 -10.35745 -10.13814 -10.09681 -10.05833 -9.75241 -9.48683 -9.08109 -9.06251 -8.45334 -7.65774 -6.11176 -4.17037 1.16719 1.35226 2.77893 3.27470 3.32351 3.34816 3.37228 3.49961 4.02663 4.38704 4.42515 4.67025 4.79927 5.05175 5.08299 5.11411 5.14391 5.21395 5.22495 5.43058 5.44625 5.50686 5.56410 5.67206 5.76057 5.86335 6.12159 6.40090 6.50726 6.66337 6.76555 6.86830 6.87757 7.18124 7.23692 7.42844 7.73554 7.93535 8.07408 8.13063 8.81627 8.92033 9.48530 10.96131 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029889 B = 0.003359 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.559345 B = 8333.848885 C = 8551.612131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.064 0.936 4 C -0.514 4.514 5 H 0.075 0.925 6 C 0.062 3.938 7 N -0.892 5.892 8 Si 0.906 3.094 9 H -0.286 1.286 10 H -0.275 1.275 11 H -0.275 1.275 12 C 0.465 3.535 13 O -0.517 6.517 14 O -0.358 6.358 15 C 0.100 3.900 16 C 0.001 3.999 17 C -0.210 4.210 18 C 0.144 3.856 19 N -0.540 5.540 20 C 0.397 3.603 21 N -0.621 5.621 22 C 0.092 3.908 23 C 0.105 3.895 24 C -0.217 4.217 25 H 0.031 0.969 26 H 0.024 0.976 27 H 0.096 0.904 28 H 0.264 0.736 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.134 0.866 32 H 0.157 0.843 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 2.924 19.452 19.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.552 4.552 5 H 0.093 0.907 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.212 1.212 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.403 6.403 14 O -0.276 6.276 15 C 0.026 3.974 16 C -0.007 4.007 17 C -0.233 4.233 18 C -0.013 4.013 19 N -0.258 5.258 20 C 0.164 3.836 21 N -0.337 5.337 22 C -0.052 4.052 23 C -0.038 4.038 24 C -0.241 4.241 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.570 3.271 20.145 20.470 hybrid contribution 0.692 -0.919 -1.491 1.883 sum 2.262 2.352 18.654 18.938 Atomic orbital electron populations 1.21733 0.95555 1.00074 1.01772 1.18767 0.94904 0.96954 0.85378 0.91817 1.21099 1.32052 1.13297 0.88782 0.90667 1.24938 0.94877 0.95008 0.99120 1.69872 1.36433 1.22752 1.23991 0.86429 0.79285 0.79681 0.81309 1.21205 1.20077 1.20062 1.25427 0.76530 0.83244 0.83799 1.90499 1.36419 1.26750 1.86676 1.86704 1.70370 1.55590 1.14975 1.21606 0.98952 0.95034 0.81813 1.19743 0.93597 0.93661 0.93721 1.21796 0.97841 1.04782 0.98866 1.22355 0.97198 0.89845 0.91882 1.67138 1.06705 1.17320 1.34671 1.18254 0.88913 0.87937 0.88512 1.46125 1.15620 1.36813 1.35096 1.21767 0.81908 1.01516 0.99969 1.21471 1.00080 0.94610 0.87648 1.21370 1.03814 1.01409 0.97546 0.94953 0.95738 0.88559 0.92611 0.90414 0.90705 0.84815 0.82591 0.90170 0.92362 0.92212 0.93638 0.92018 0.90699 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.90 37.16 0.33 -2.85 16 2 C 0.06 1.50 2.74 -92.92 -0.25 1.25 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.08 2.19 6.76 -52.49 -0.35 1.83 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.83 11.32 55.43 0.63 -24.20 16 8 Si 0.91 21.43 29.54 -169.99 -5.02 16.40 16 9 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.47 10.94 7.25 36.01 0.26 11.20 16 13 O -0.52 -13.06 15.21 -18.75 -0.29 -13.34 16 14 O -0.36 -7.22 10.11 -39.24 -0.40 -7.62 16 15 C 0.10 1.62 5.64 36.00 0.20 1.83 16 16 C 0.00 0.01 5.55 -104.36 -0.58 -0.57 16 17 C -0.21 -2.71 9.81 -39.42 -0.39 -3.09 16 18 C 0.14 1.73 11.17 -17.57 -0.20 1.53 16 19 N -0.54 -7.29 9.21 -12.44 -0.11 -7.40 16 20 C 0.40 5.30 7.34 -155.02 -1.14 4.16 16 21 N -0.62 -6.80 3.39 -189.66 -0.64 -7.44 16 22 C 0.09 0.74 10.56 59.85 0.63 1.38 16 23 C 0.10 0.93 10.44 59.85 0.62 1.56 16 24 C -0.22 -2.94 8.97 -39.23 -0.35 -3.29 16 25 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 27 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.07 1.16 8.09 -51.92 -0.42 0.74 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.16 1.37 8.06 -52.48 -0.42 0.94 16 33 H 0.08 0.65 5.41 -51.93 -0.28 0.37 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.07 0.74 7.51 -51.93 -0.39 0.35 16 39 H 0.14 1.63 5.88 -52.48 -0.31 1.32 16 LS Contribution 331.30 15.07 4.99 4.99 Total: -1.00 -31.68 331.30 -7.50 -39.19 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.42 Total: -0.55 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.24 Total: -0.02 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.13 Total: -39.05 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.68 Total: -20.96 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.68 -7.50 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.794 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds