Wall clock time and date at job start Tue Mar 31 2020 00:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47195 * 2 1 4 4 C 1.50699 * 109.47395 * 240.00094 * 2 1 3 5 5 H 1.08000 * 120.00416 * 240.00423 * 4 2 1 6 6 C 1.37877 * 119.99910 * 59.99898 * 4 2 1 7 7 N 1.31516 * 120.00088 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00144 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46993 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46804 * 299.99803 * 8 6 4 11 11 H 1.48498 * 109.47256 * 59.99868 * 8 6 4 12 12 C 1.50708 * 109.47525 * 120.00220 * 2 1 3 13 13 O 1.20825 * 120.00160 * 119.99715 * 12 2 1 14 14 O 1.34224 * 119.99508 * 300.00529 * 12 2 1 15 15 C 1.45199 * 117.00014 * 179.97438 * 14 12 2 16 16 C 1.50696 * 109.47664 * 179.97438 * 15 14 12 17 17 C 1.38890 * 120.74411 * 89.99696 * 16 15 14 18 18 C 1.38022 * 119.32622 * 179.97438 * 17 16 15 19 19 N 1.31966 * 120.86076 * 0.02562 * 18 17 16 20 20 C 1.32402 * 121.62406 * 359.97438 * 19 18 17 21 21 N 1.38998 * 119.70797 * 180.02562 * 20 19 18 22 22 C 1.46503 * 119.99692 * 171.76999 * 21 20 19 23 23 C 1.46498 * 120.00038 * 351.76913 * 21 20 19 24 24 C 1.38296 * 120.75186 * 269.72094 * 16 15 14 25 25 H 1.08995 * 109.46890 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46971 * 299.99693 * 1 2 3 27 27 H 1.08999 * 109.46828 * 60.00158 * 1 2 3 28 28 H 0.97005 * 120.00428 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.47229 * 299.99958 * 15 14 12 30 30 H 1.09010 * 109.46948 * 59.99141 * 15 14 12 31 31 H 1.07998 * 120.33552 * 0.02562 * 17 16 15 32 32 H 1.08003 * 119.56547 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47531 * 354.56132 * 22 21 20 34 34 H 1.09000 * 109.46708 * 114.56185 * 22 21 20 35 35 H 1.09002 * 109.47068 * 234.55587 * 22 21 20 36 36 H 1.09000 * 109.47122 * 90.00196 * 23 21 20 37 37 H 1.09004 * 109.47077 * 210.00252 * 23 21 20 38 38 H 1.08999 * 109.46711 * 329.99845 * 23 21 20 39 39 H 1.08004 * 120.44786 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.8270 -0.4197 -5.2204 10 1 3.8065 -1.1207 -4.0082 11 1 1.8260 -2.5201 -4.0079 12 6 2.0324 -0.7105 1.2305 13 8 2.7271 -1.6928 1.1196 14 8 1.7081 -0.2519 2.4495 15 6 2.2268 -0.9864 3.5896 16 6 1.7629 -0.3293 4.8639 17 6 0.5692 -0.7082 5.4644 18 6 0.1726 -0.0872 6.6315 19 7 0.9117 0.8585 7.1800 20 6 2.0555 1.2475 6.6383 21 7 2.8027 2.2472 7.2502 22 6 4.1488 2.5580 6.7626 23 6 2.2441 2.9900 8.3827 24 6 2.5189 0.6606 5.4649 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.7095 1.1619 -3.4844 29 1 1.8627 -2.0133 3.5565 30 1 3.3164 -0.9861 3.5568 31 1 -0.0420 -1.4815 5.0230 32 1 -0.7551 -0.3786 7.1015 33 1 4.4277 1.8452 5.9866 34 1 4.1620 3.5671 6.3508 35 1 4.8581 2.4929 7.5877 36 1 2.5005 2.4819 9.3124 37 1 2.6565 3.9989 8.3943 38 1 1.1599 3.0417 8.2839 39 1 3.4546 0.9762 5.0276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327503225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:38 Heat of formation + Delta-G solvation = -57.015663 kcal Electronic energy + Delta-G solvation = -21021.529175 eV Core-core repulsion = 17736.012537 eV Total energy + Delta-G solvation = -3285.516637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.61426 -41.06841 -37.87344 -37.24699 -35.92893 -34.28617 -32.62248 -31.41187 -29.45798 -28.07544 -27.27686 -26.10799 -24.90224 -23.59975 -21.84868 -21.60675 -18.71128 -18.34189 -18.01915 -17.95404 -17.28400 -16.91667 -16.64957 -16.25970 -16.11830 -15.47571 -15.18298 -14.76724 -14.57442 -14.33572 -14.09004 -13.62360 -13.38078 -13.30759 -13.06637 -12.98266 -12.94708 -12.75583 -12.61331 -12.50657 -12.29658 -12.05169 -11.67594 -11.25264 -11.12837 -10.92750 -10.65473 -10.51818 -10.46508 -8.51808 -8.20017 -6.33831 0.10391 0.37011 1.40729 1.43486 1.45548 1.53272 1.94204 2.03454 2.44350 2.95659 3.10109 3.41989 3.63827 3.82137 4.05812 4.13287 4.25103 4.28130 4.39371 4.46860 4.52835 4.54875 4.68292 4.75995 4.78232 4.86903 4.89609 4.91380 4.98193 4.99128 5.35630 5.39476 5.44961 5.57342 5.68321 5.87772 5.99454 6.09436 6.34723 6.72573 7.01418 7.12878 7.35181 8.86278 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.029889 B = 0.003359 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.559345 B = 8333.848885 C = 8551.612131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 H 0.050 0.950 4 C -0.541 4.541 5 H 0.058 0.942 6 C 0.023 3.977 7 N -0.910 5.910 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.475 3.525 13 O -0.539 6.539 14 O -0.357 6.357 15 C 0.100 3.900 16 C -0.015 4.015 17 C -0.218 4.218 18 C 0.146 3.854 19 N -0.553 5.553 20 C 0.386 3.614 21 N -0.625 5.625 22 C 0.086 3.914 23 C 0.103 3.897 24 C -0.228 4.228 25 H 0.031 0.969 26 H 0.046 0.954 27 H 0.077 0.923 28 H 0.268 0.732 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.189 0.811 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 3.134 20.357 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.032 3.968 3 H 0.068 0.932 4 C -0.579 4.579 5 H 0.076 0.924 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.429 6.429 14 O -0.274 6.274 15 C 0.026 3.974 16 C -0.023 4.023 17 C -0.240 4.240 18 C -0.010 4.010 19 N -0.272 5.272 20 C 0.152 3.848 21 N -0.340 5.340 22 C -0.056 4.056 23 C -0.039 4.039 24 C -0.252 4.252 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.206 0.794 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.527 3.516 21.084 21.430 hybrid contribution 0.711 -0.917 -1.625 1.997 sum 2.238 2.599 19.458 19.758 Atomic orbital electron populations 1.21559 0.94377 0.99996 1.01895 1.18684 0.95914 0.96120 0.86097 0.93232 1.21241 1.32786 1.13391 0.90443 0.92373 1.25650 0.94840 0.95628 1.01596 1.69958 1.36599 1.23379 1.24849 0.85517 0.78748 0.78684 0.78163 1.19938 1.19854 1.19806 1.24857 0.76018 0.82576 0.84536 1.90480 1.37411 1.27677 1.87304 1.86636 1.70079 1.55804 1.14894 1.21852 0.99330 0.95242 0.80968 1.19690 0.94799 0.94648 0.93177 1.22001 0.97479 1.05265 0.99299 1.22885 0.97876 0.88876 0.91411 1.67238 1.07015 1.17907 1.35055 1.18507 0.89182 0.88495 0.88652 1.46452 1.16260 1.36091 1.35185 1.21947 0.81040 1.01938 1.00719 1.21570 0.99445 0.95699 0.87194 1.21491 1.04265 1.01480 0.97982 0.95022 0.93511 0.90388 0.92224 0.89744 0.90226 0.83490 0.79419 0.90540 0.91294 0.90263 0.93066 0.89696 0.91948 0.83975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.73 8.90 71.98 0.64 -5.09 16 2 C 0.05 2.63 2.74 -12.28 -0.03 2.60 16 3 H 0.05 2.67 8.14 -2.39 -0.02 2.66 16 4 C -0.54 -30.75 8.37 25.60 0.21 -30.54 16 5 H 0.06 3.45 6.76 -2.91 -0.02 3.43 16 6 C 0.02 1.26 5.30 84.65 0.45 1.71 16 7 N -0.91 -50.59 11.32 21.45 0.24 -50.35 16 8 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 C 0.47 22.44 7.25 71.24 0.52 22.96 16 13 O -0.54 -27.53 15.21 21.97 0.33 -27.20 16 14 O -0.36 -14.27 10.11 -51.36 -0.52 -14.79 16 15 C 0.10 3.17 5.64 71.23 0.40 3.57 16 16 C -0.02 -0.42 5.55 -19.70 -0.11 -0.53 16 17 C -0.22 -5.30 9.81 22.37 0.22 -5.08 16 18 C 0.15 3.24 11.17 84.62 0.95 4.19 16 19 N -0.55 -14.13 9.21 -193.26 -1.78 -15.91 16 20 C 0.39 9.85 7.34 133.07 0.98 10.83 16 21 N -0.63 -12.71 3.39 -753.96 -2.56 -15.26 16 22 C 0.09 1.24 10.56 127.77 1.35 2.59 16 23 C 0.10 1.65 10.44 127.77 1.33 2.99 16 24 C -0.23 -6.00 8.97 22.50 0.20 -5.80 16 25 H 0.03 1.45 8.14 -2.39 -0.02 1.44 16 26 H 0.05 1.96 8.11 -2.39 -0.02 1.94 16 27 H 0.08 4.01 6.07 -2.39 -0.01 3.99 16 28 H 0.27 14.08 8.31 -92.70 -0.77 13.31 16 29 H 0.08 2.57 8.10 -2.39 -0.02 2.55 16 30 H 0.08 2.44 8.09 -2.38 -0.02 2.42 16 31 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.19 2.78 8.06 -2.91 -0.02 2.75 16 33 H 0.08 1.16 5.41 -2.39 -0.01 1.15 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 0.95 8.07 -2.38 -0.02 0.93 16 38 H 0.06 1.16 7.51 -2.39 -0.02 1.14 16 39 H 0.14 3.37 5.88 -2.91 -0.02 3.35 16 Total: -1.00 -66.91 331.30 5.90 -61.01 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: 1.05 Total: 12.39 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 7.11 Total: 4.40 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -4.09 Total: -81.52 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -0.18 Total: -41.98 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -66.91 5.90 -61.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327503225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.989 kcal (2) G-P(sol) polarization free energy of solvation -66.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds