Wall clock time and date at job start Tue Mar 31 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47515 * 2 1 4 4 N 1.46500 * 109.47087 * 120.00308 * 2 1 3 5 5 C 1.34783 * 119.99869 * 274.99848 * 4 2 1 6 6 O 1.21282 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.50694 * 119.99858 * 180.02562 * 5 4 2 8 8 C 1.50708 * 109.46832 * 179.97438 * 7 5 4 9 9 C 1.34510 * 125.79017 * 90.00061 * 8 7 5 10 10 C 1.41383 * 106.83911 * 179.97438 * 9 8 7 11 11 C 1.34511 * 106.83966 * 359.97438 * 10 9 8 12 12 O 1.34301 * 125.78498 * 269.68705 * 8 7 5 13 13 C 1.53003 * 109.46711 * 240.00085 * 2 1 3 14 14 C 1.53486 * 114.20850 * 60.00280 * 13 2 1 15 15 N 1.47064 * 87.98715 * 87.51930 * 14 13 2 16 16 C 1.36944 * 136.05968 * 207.08932 * 15 14 13 17 17 H 1.08003 * 119.99220 * 7.55219 * 16 15 14 18 18 C 1.38804 * 120.00270 * 187.55676 * 16 15 14 19 19 N 1.31616 * 120.00491 * 174.37770 * 18 16 15 20 20 Si 1.86810 * 119.99801 * 354.37977 * 18 16 15 21 21 H 1.48499 * 109.46858 * 174.95062 * 20 18 16 22 22 H 1.48498 * 109.46907 * 294.94544 * 20 18 16 23 23 H 1.48495 * 109.47036 * 54.94600 * 20 18 16 24 24 C 1.47066 * 87.88390 * 27.34185 * 15 14 13 25 25 H 1.09000 * 109.46986 * 300.00218 * 1 2 3 26 26 H 1.09004 * 109.47074 * 59.99832 * 1 2 3 27 27 H 1.08994 * 109.47561 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00381 * 94.99496 * 4 2 1 29 29 H 1.09000 * 109.46987 * 299.99215 * 7 5 4 30 30 H 1.08998 * 109.47490 * 59.99631 * 7 5 4 31 31 H 1.08003 * 126.57825 * 359.95464 * 9 8 7 32 32 H 1.08001 * 126.57662 * 179.97438 * 10 9 8 33 33 H 1.07998 * 125.78865 * 180.02562 * 11 10 9 34 34 H 1.08998 * 113.41116 * 286.79710 * 13 2 1 35 35 H 1.09003 * 113.46770 * 332.73878 * 14 13 2 36 36 H 1.09004 * 113.52153 * 202.31032 * 14 13 2 37 37 H 0.97003 * 119.99848 * 354.81683 * 19 18 16 38 38 H 1.08996 * 113.46631 * 87.44126 * 24 15 14 39 39 H 1.09001 * 113.46561 * 217.88042 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3572 6 8 1.8590 1.1586 2.4114 7 6 2.6499 -0.7286 3.5874 8 6 2.7011 0.2399 4.7409 9 6 1.7031 0.4819 5.6098 10 6 2.1800 1.4517 6.5214 11 6 3.4409 1.7438 6.1554 12 8 3.7529 1.0033 5.0793 13 6 2.0399 -0.7213 -1.2493 14 6 1.5898 -0.0846 -2.5714 15 7 2.7723 0.7864 -2.4946 16 6 3.1105 2.0324 -2.9511 17 1 2.3637 2.6574 -3.4180 18 6 4.4131 2.4918 -2.8140 19 7 4.7655 3.6412 -3.3498 20 14 5.6662 1.4788 -1.8688 21 1 7.0008 2.1220 -1.9706 22 1 5.2629 1.3987 -0.4418 23 1 5.7308 0.1107 -2.4425 24 6 3.4340 -0.2723 -1.7172 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.2490 -1.6318 1.1526 29 1 1.9776 -1.5509 3.8325 30 1 3.6492 -1.1205 3.3978 31 1 0.7252 0.0236 5.6105 32 1 1.6361 1.8764 7.3522 33 1 4.0933 2.4509 6.6462 34 1 1.9117 -1.8029 -1.2076 35 1 0.6466 0.4562 -2.4938 36 1 1.6122 -0.7736 -3.4158 37 1 4.1374 4.1310 -3.9035 38 1 3.9431 -1.0113 -2.3358 39 1 4.0620 0.1087 -0.9119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330060175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:29:12 Heat of formation + Delta-G solvation = 12.206798 kcal Electronic energy + Delta-G solvation = -21720.037774 eV Core-core repulsion = 18437.522848 eV Total energy + Delta-G solvation = -3282.514926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.47574 -41.20093 -39.98216 -36.19542 -34.54866 -34.13507 -33.23988 -31.59412 -29.64276 -28.07454 -26.90801 -25.30056 -23.38669 -22.67596 -21.94303 -21.24040 -20.57556 -19.48235 -18.39706 -18.17429 -17.52558 -17.06187 -16.63546 -16.31785 -15.95913 -15.79945 -15.25963 -15.14196 -14.64398 -14.51081 -13.98673 -13.72304 -13.62195 -13.53430 -13.31361 -13.16184 -12.82950 -12.70555 -12.64379 -12.22986 -12.05354 -11.68676 -11.32161 -11.06901 -11.01713 -10.86227 -10.79936 -10.09157 -9.38176 -9.19961 -8.62795 -5.46898 0.76331 1.30488 1.43175 1.61166 1.63065 1.68958 2.06509 2.37848 2.50841 3.03718 3.20338 3.44680 3.62680 3.80050 3.99377 4.15732 4.17941 4.34921 4.37918 4.42256 4.49503 4.56123 4.62543 4.68643 4.75123 4.78290 4.86868 4.92505 5.01836 5.11791 5.20831 5.23554 5.28510 5.40537 5.62216 5.63973 5.95073 6.21968 6.61587 6.70033 7.33017 7.33357 8.28550 8.89262 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.005009 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.590728 B = 5588.994475 C = 6449.808236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.167 3.833 3 H 0.036 0.964 4 N -0.705 5.705 5 C 0.505 3.495 6 O -0.588 6.588 7 C -0.052 4.052 8 C -0.020 4.020 9 C -0.209 4.209 10 C -0.227 4.227 11 C -0.051 4.051 12 O -0.200 6.200 13 C -0.105 4.105 14 C 0.124 3.876 15 N -0.665 5.665 16 C -0.284 4.284 17 H 0.047 0.953 18 C -0.090 4.090 19 N -0.976 5.976 20 Si 1.111 2.889 21 H -0.307 1.307 22 H -0.291 1.291 23 H -0.247 1.247 24 C 0.088 3.912 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.422 0.578 29 H 0.169 0.831 30 H 0.135 0.865 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.230 0.770 34 H 0.141 0.859 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.245 0.755 38 H 0.067 0.933 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.105 -18.389 18.438 26.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.062 3.938 3 H 0.054 0.946 4 N -0.358 5.358 5 C 0.292 3.708 6 O -0.468 6.468 7 C -0.091 4.091 8 C -0.070 4.070 9 C -0.228 4.228 10 C -0.246 4.246 11 C -0.118 4.118 12 O -0.096 6.096 13 C -0.124 4.124 14 C -0.001 4.001 15 N -0.394 5.394 16 C -0.412 4.412 17 H 0.065 0.935 18 C -0.281 4.281 19 N -0.622 5.622 20 Si 0.938 3.062 21 H -0.235 1.235 22 H -0.218 1.218 23 H -0.171 1.171 24 C -0.037 4.037 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.261 0.739 29 H 0.186 0.814 30 H 0.153 0.847 31 H 0.181 0.819 32 H 0.187 0.813 33 H 0.247 0.753 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.464 -17.364 18.758 26.139 hybrid contribution -1.579 1.000 -1.033 2.135 sum -7.043 -16.364 17.725 25.131 Atomic orbital electron populations 1.22003 0.93523 1.03591 1.01332 1.20367 0.94814 0.95365 0.83235 0.94570 1.45813 1.66868 1.14827 1.08286 1.21159 0.77065 0.86922 0.85666 1.90759 1.51657 1.18659 1.85734 1.20267 1.07212 0.95719 0.85880 1.22105 0.87053 0.98262 0.99580 1.21879 1.00595 1.02625 0.97687 1.22178 0.96310 1.02228 1.03884 1.24728 0.99014 0.98979 0.89052 1.83990 1.39603 1.44972 1.41079 1.23010 0.95027 1.01278 0.93073 1.22673 0.90782 0.91320 0.95316 1.46146 1.16456 1.12402 1.64444 1.20007 0.95327 0.90895 1.35007 0.93523 1.26995 0.98667 0.99720 1.02717 1.71005 1.37800 1.16870 1.36564 0.83239 0.73068 0.75157 0.74739 1.23488 1.21843 1.17148 1.23120 0.96482 0.90237 0.93840 0.94071 0.92227 0.88807 0.73927 0.81353 0.84743 0.81945 0.81348 0.75328 0.84115 0.93349 0.91571 0.94598 0.91505 0.94629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.29 71.98 0.67 -3.10 16 2 C 0.17 5.11 2.43 44.99 0.11 5.22 16 3 H 0.04 1.61 7.36 -2.39 -0.02 1.60 16 4 N -0.70 -16.09 5.08 -442.52 -2.25 -18.34 16 5 C 0.50 14.07 7.79 87.65 0.68 14.76 16 6 O -0.59 -24.24 15.70 -3.04 -0.05 -24.28 16 7 C -0.05 -0.92 6.23 29.10 0.18 -0.74 16 8 C -0.02 -0.50 5.81 24.83 0.14 -0.36 16 9 C -0.21 -4.81 10.81 22.19 0.24 -4.57 16 10 C -0.23 -4.92 10.91 22.19 0.24 -4.68 16 11 C -0.05 -1.15 12.09 66.97 0.81 -0.34 16 12 O -0.20 -5.69 10.65 -2.46 -0.03 -5.72 16 13 C -0.10 -2.91 3.73 -10.37 -0.04 -2.95 16 14 C 0.12 4.36 8.08 83.17 0.67 5.04 16 15 N -0.67 -32.30 3.49 -738.03 -2.58 -34.87 16 16 C -0.28 -17.33 11.08 84.03 0.93 -16.40 16 17 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 18 C -0.09 -5.68 5.50 84.86 0.47 -5.21 16 19 N -0.98 -66.60 13.70 21.65 0.30 -66.30 16 20 Si 1.11 56.96 25.16 68.60 1.73 58.69 16 21 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 22 H -0.29 -14.56 6.51 99.48 0.65 -13.92 16 23 H -0.25 -10.85 6.20 99.48 0.62 -10.24 16 24 C 0.09 3.36 5.24 83.26 0.44 3.80 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.65 6.50 -2.39 -0.02 1.63 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.42 5.27 8.60 -92.71 -0.80 4.47 16 29 H 0.17 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 33 H 0.23 3.29 8.06 -2.91 -0.02 3.26 16 34 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.05 1.70 6.43 -2.39 -0.02 1.69 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.25 16.75 8.73 -92.71 -0.81 15.94 16 38 H 0.07 2.33 7.66 -2.39 -0.02 2.31 16 39 H 0.04 1.51 4.71 -2.39 -0.01 1.49 16 Total: -1.00 -91.43 323.66 2.74 -88.68 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.08 Total: 11.68 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 5.54 Total: -9.54 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -4.53 Total: -119.51 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.07 Total: -30.00 kcal Atomic # 14 Polarization: 56.96 SS G_CDS: 1.73 Total: 58.69 kcal Total: -91.43 2.74 -88.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330060175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.889 kcal (2) G-P(sol) polarization free energy of solvation -91.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds