Wall clock time and date at job start Tue Mar 31 2020 00:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47252 * 2 1 4 4 C 1.50703 * 109.47024 * 239.99998 * 2 1 3 5 5 H 1.08000 * 119.99986 * 240.00442 * 4 2 1 6 6 C 1.37879 * 119.99937 * 59.99949 * 4 2 1 7 7 N 1.31521 * 119.99804 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00012 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47234 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.46927 * 120.00245 * 8 6 4 11 11 H 1.48504 * 109.47103 * 239.99865 * 8 6 4 12 12 C 1.50699 * 109.47249 * 120.00476 * 2 1 3 13 13 O 1.21295 * 120.00351 * 119.99584 * 12 2 1 14 14 N 1.34781 * 119.99710 * 299.99745 * 12 2 1 15 15 C 1.40107 * 119.99887 * 184.61728 * 14 12 2 16 16 C 1.38846 * 120.01781 * 144.91325 * 15 14 12 17 17 C 1.38088 * 119.98670 * 180.25355 * 16 15 14 18 18 C 1.38726 * 120.01462 * 359.44559 * 17 16 15 19 19 O 1.35965 * 119.98639 * 180.25567 * 18 17 16 20 20 C 1.42908 * 116.99996 * 0.30065 * 19 18 17 21 21 C 1.52999 * 109.47002 * 180.02562 * 20 19 18 22 22 N 1.46899 * 109.47483 * 64.99614 * 21 20 19 23 23 C 1.38725 * 120.02586 * 0.55062 * 18 17 16 24 24 C 1.38085 * 120.01554 * 359.72785 * 23 18 17 25 25 H 1.09006 * 109.46730 * 299.99527 * 1 2 3 26 26 H 1.08990 * 109.47210 * 59.99925 * 1 2 3 27 27 H 1.09000 * 109.47252 * 179.97438 * 1 2 3 28 28 H 0.97004 * 119.99846 * 179.97438 * 7 6 4 29 29 H 0.96994 * 120.00046 * 4.60971 * 14 12 2 30 30 H 1.08003 * 120.00760 * 359.97438 * 16 15 14 31 31 H 1.08004 * 119.99233 * 179.69566 * 17 16 15 32 32 H 1.09001 * 109.46196 * 299.99294 * 20 19 18 33 33 H 1.08998 * 109.47273 * 59.99683 * 20 19 18 34 34 H 1.08994 * 109.46986 * 185.00067 * 21 20 19 35 35 H 1.09003 * 109.46648 * 304.99390 * 21 20 19 36 36 H 1.00899 * 110.99988 * 56.04102 * 22 21 20 37 37 H 1.00905 * 110.99750 * 180.02562 * 22 21 20 38 38 H 1.08004 * 119.98958 * 179.69955 * 23 18 17 39 39 H 1.08002 * 120.00424 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 3.1463 -2.2869 -3.6039 10 1 1.1659 -1.5866 -4.8161 11 1 3.1465 -0.1873 -4.8166 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6967 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.2515 -0.8513 3.5968 16 6 2.5596 -0.0786 4.7085 17 6 3.1013 -0.6710 5.8321 18 6 3.3271 -2.0396 5.8545 19 8 3.8557 -2.6231 6.9630 20 6 4.1482 -1.7675 8.0697 21 6 4.7321 -2.5969 9.2151 22 7 6.0264 -3.1568 8.8040 23 6 3.0194 -2.8122 4.7441 24 6 2.4830 -2.2202 3.6179 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7086 1.1613 -3.4844 29 1 1.0955 0.4976 2.5447 30 1 2.3798 0.9862 4.6929 31 1 3.3456 -0.0693 6.6951 32 1 4.8715 -1.0119 7.7633 33 1 3.2325 -1.2797 8.4038 34 1 4.8724 -1.9611 10.0892 35 1 4.0472 -3.4081 9.4621 36 1 6.6582 -2.4279 8.5082 37 1 6.4327 -3.7097 9.5440 38 1 3.1999 -3.8769 4.7605 39 1 2.2439 -2.8217 2.7534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341644397.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:42:03 Heat of formation + Delta-G solvation = -50.407349 kcal Electronic energy + Delta-G solvation = -20837.948745 eV Core-core repulsion = 17552.718666 eV Total energy + Delta-G solvation = -3285.230079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.24785 -39.17380 -37.18300 -35.00054 -33.81711 -33.60630 -30.88424 -30.62438 -28.91249 -27.64384 -25.17643 -23.60175 -23.08223 -21.93828 -21.25623 -19.30092 -18.23891 -17.28758 -16.77958 -16.20416 -16.01421 -15.62731 -15.12732 -14.78525 -14.52693 -14.28133 -13.93698 -13.58727 -13.32544 -13.04227 -12.97914 -12.71383 -12.33022 -12.30421 -11.64056 -11.57024 -11.12355 -11.04416 -10.75932 -10.69532 -10.68717 -10.30078 -9.99160 -9.42580 -9.06744 -9.00631 -8.87252 -8.60322 -8.35685 -7.37928 -6.06027 -4.09419 1.53013 1.62255 3.18596 3.31800 3.39486 3.47735 3.53645 3.78763 4.07600 4.14778 4.46086 4.59728 4.75702 4.94105 4.99156 5.04808 5.10687 5.27571 5.44142 5.52621 5.58415 5.83124 6.04036 6.18089 6.25331 6.45387 6.54710 6.69343 6.70294 6.76647 6.83307 6.87333 7.03511 7.26527 7.42501 7.58299 7.71657 7.93707 8.07385 8.34362 8.99786 9.08649 9.56450 11.01632 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040544 B = 0.003075 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.438799 B = 9102.082916 C = 9526.220066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.031 3.969 3 H 0.055 0.945 4 C -0.501 4.501 5 H 0.076 0.924 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.518 3.482 13 O -0.526 6.526 14 N -0.688 5.688 15 C 0.126 3.874 16 C -0.117 4.117 17 C -0.193 4.193 18 C 0.100 3.900 19 O -0.302 6.302 20 C 0.062 3.938 21 C 0.063 3.937 22 N -0.844 5.844 23 C -0.131 4.131 24 C -0.085 4.085 25 H 0.012 0.988 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.406 0.594 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.341 0.659 37 H 0.343 0.657 38 H 0.130 0.870 39 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.275 -0.897 22.201 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.010 3.990 3 H 0.073 0.927 4 C -0.540 4.540 5 H 0.094 0.906 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.310 3.690 13 O -0.400 6.400 14 N -0.334 5.334 15 C 0.031 3.969 16 C -0.138 4.138 17 C -0.212 4.212 18 C 0.055 3.945 19 O -0.215 6.215 20 C -0.015 4.015 21 C -0.068 4.068 22 N -0.375 5.375 23 C -0.150 4.150 24 C -0.105 4.105 25 H 0.031 0.969 26 H 0.114 0.886 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.241 0.759 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.324 -2.066 21.356 21.711 hybrid contribution 0.376 0.978 0.120 1.055 sum 3.700 -1.087 21.476 21.819 Atomic orbital electron populations 1.21772 0.96328 1.00034 1.01106 1.18910 0.94268 0.96935 0.88918 0.92683 1.21173 1.31057 1.12889 0.88871 0.90603 1.24953 0.95055 0.95058 0.99176 1.69879 1.37066 1.23110 1.23531 0.86382 0.78627 0.79804 0.82374 1.19495 1.21018 1.21042 1.22257 0.78269 0.84371 0.84153 1.90529 1.37201 1.25952 1.86281 1.44059 1.48139 1.36595 1.04610 1.17862 0.99348 0.91925 0.87740 1.20681 1.00793 0.99213 0.93142 1.20894 1.06895 0.93628 0.99828 1.18946 0.96653 0.91474 0.87457 1.86166 1.77676 1.36013 1.21675 1.22763 0.99433 0.92972 0.86295 1.21820 0.92402 0.98558 0.94015 1.58567 1.05649 1.28929 1.44360 1.20335 1.03397 1.00142 0.91129 1.21255 0.98004 0.93509 0.97745 0.96859 0.88623 0.94798 0.92959 0.75852 0.85762 0.85893 0.92399 0.91801 0.93615 0.89825 0.84620 0.84470 0.85227 0.83478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.86 37.16 0.33 -2.69 16 2 C 0.03 0.75 2.65 -92.92 -0.25 0.51 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C -0.50 -14.07 8.37 -34.44 -0.29 -14.36 16 5 H 0.08 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.93 11.32 55.43 0.63 -24.30 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.52 11.72 6.99 -10.98 -0.08 11.64 16 13 O -0.53 -13.41 12.90 5.54 0.07 -13.33 16 14 N -0.69 -12.33 5.26 -9.83 -0.05 -12.38 16 15 C 0.13 2.16 6.30 -83.62 -0.53 1.63 16 16 C -0.12 -1.65 9.96 -39.41 -0.39 -2.05 16 17 C -0.19 -2.51 9.03 -39.46 -0.36 -2.86 16 18 C 0.10 1.44 6.69 -39.22 -0.26 1.18 16 19 O -0.30 -3.96 10.08 -19.63 -0.20 -4.16 16 20 C 0.06 0.55 5.02 37.16 0.19 0.74 16 21 C 0.06 0.45 7.17 -3.82 -0.03 0.42 16 22 N -0.84 -6.49 9.57 -10.37 -0.10 -6.59 16 23 C -0.13 -2.06 9.98 -39.46 -0.39 -2.45 16 24 C -0.08 -1.51 8.69 -39.41 -0.34 -1.85 16 25 H 0.01 0.23 7.47 -51.93 -0.39 -0.15 16 26 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.41 6.09 8.11 -40.82 -0.33 5.75 16 30 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 31 H 0.12 1.23 6.29 -52.48 -0.33 0.90 16 32 H 0.06 0.48 7.65 -51.93 -0.40 0.08 16 33 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.34 2.28 8.99 -39.29 -0.35 1.93 16 37 H 0.34 1.90 9.08 -39.29 -0.36 1.54 16 38 H 0.13 1.88 8.06 -52.48 -0.42 1.45 16 39 H 0.15 2.91 6.22 -52.49 -0.33 2.58 16 LS Contribution 326.32 15.07 4.92 4.92 Total: -1.00 -32.20 326.32 -7.47 -39.67 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -5.22 Total: 8.11 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.49 Total: -8.64 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.48 Total: -43.27 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.13 Total: -17.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.20 -7.47 -39.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341644397.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.741 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds