Wall clock time and date at job start Tue Mar 31 2020 00:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47648 * 2 1 4 4 C 1.50708 * 109.47096 * 120.00229 * 2 1 3 5 5 H 1.07995 * 120.00082 * 119.99939 * 4 2 1 6 6 C 1.37881 * 119.99537 * 299.99986 * 4 2 1 7 7 N 1.31515 * 120.00200 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99770 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47288 * 89.99500 * 8 6 4 10 10 H 1.48502 * 109.47202 * 209.99910 * 8 6 4 11 11 H 1.48502 * 109.47051 * 330.00111 * 8 6 4 12 12 O 1.45207 * 109.47260 * 239.99726 * 2 1 3 13 13 C 1.34870 * 116.99593 * 90.00439 * 12 2 1 14 14 O 1.21604 * 120.00209 * 0.02562 * 13 12 2 15 15 C 1.46591 * 119.99941 * 180.02562 * 13 12 2 16 16 C 1.36776 * 126.89172 * 180.02562 * 15 13 12 17 17 N 1.33274 * 107.77680 * 179.67949 * 16 15 13 18 18 C 1.30983 * 109.77569 * 359.85382 * 17 16 15 19 19 N 1.34509 * 108.96579 * 0.51993 * 18 17 16 20 20 C 1.46467 * 126.54398 * 178.95624 * 19 18 17 21 21 C 1.53038 * 109.56697 * 28.22125 * 20 19 18 22 22 C 1.52829 * 109.60778 * 270.60658 * 21 20 19 23 23 C 1.52580 * 110.29848 * 61.23813 * 22 21 20 24 24 C 1.50937 * 125.83623 * 181.03734 * 18 17 16 25 25 H 1.08999 * 109.47271 * 300.00122 * 1 2 3 26 26 H 1.08997 * 109.47017 * 60.00109 * 1 2 3 27 27 H 1.08999 * 109.47648 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99710 * 179.97438 * 7 6 4 29 29 H 1.08000 * 126.11540 * 359.93678 * 16 15 13 30 30 H 1.09001 * 109.45622 * 148.24796 * 20 19 18 31 31 H 1.09001 * 109.45904 * 268.20489 * 20 19 18 32 32 H 1.08990 * 109.45221 * 30.64691 * 21 20 19 33 33 H 1.09006 * 109.44769 * 150.56767 * 21 20 19 34 34 H 1.08998 * 109.33797 * 181.49678 * 22 21 20 35 35 H 1.09005 * 109.33078 * 300.98615 * 22 21 20 36 36 H 1.08999 * 109.45750 * 153.43758 * 23 22 21 37 37 H 1.08999 * 109.45572 * 273.40055 * 23 22 21 38 38 H 1.09000 * 109.50809 * 346.38658 * 24 18 17 39 39 H 1.09000 * 109.50555 * 106.51168 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 8 2.0140 -0.6846 -1.1856 13 6 2.2182 0.0675 -2.2863 14 8 1.9979 1.2631 -2.2553 15 6 2.7056 -0.5562 -3.5201 16 6 2.9603 0.0676 -4.7104 17 7 3.3931 -0.8552 -5.5690 18 6 3.4272 -2.0255 -4.9818 19 7 3.0008 -1.8908 -3.7133 20 6 2.8648 -2.9592 -2.7207 21 6 3.8727 -4.0705 -3.0226 22 6 3.2439 -5.0890 -3.9728 23 6 2.8701 -4.4210 -5.2927 24 6 3.8818 -3.3185 -5.6141 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7088 1.1613 3.4844 29 1 2.8372 1.1206 -4.9163 30 1 3.0552 -2.5569 -1.7257 31 1 1.8541 -3.3655 -2.7607 32 1 4.7595 -3.6398 -3.4874 33 1 4.1549 -4.5667 -2.0939 34 1 3.9559 -5.8920 -4.1638 35 1 2.3480 -5.5063 -3.5131 36 1 2.8770 -5.1638 -6.0904 37 1 1.8739 -3.9862 -5.2102 38 1 3.9503 -3.1911 -6.6944 39 1 4.8587 -3.5942 -5.2168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341955107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:42 Heat of formation + Delta-G solvation = -41.244645 kcal Electronic energy + Delta-G solvation = -22213.005259 eV Core-core repulsion = 18928.172504 eV Total energy + Delta-G solvation = -3284.832755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32772 -39.23002 -37.42443 -35.70640 -33.89274 -33.23439 -30.96378 -29.99469 -29.20593 -26.24149 -25.39631 -24.66975 -23.41413 -20.99696 -20.17848 -20.13412 -19.47944 -17.46716 -16.64724 -16.26738 -16.00204 -15.41726 -15.13545 -15.03952 -14.61290 -14.47688 -13.94793 -13.39794 -13.10511 -13.06474 -12.80949 -12.35211 -12.09697 -11.96356 -11.76463 -11.32638 -11.17099 -11.10494 -11.00437 -10.90667 -10.75075 -10.42649 -10.36383 -10.21486 -9.78211 -9.64288 -9.54202 -8.98472 -8.56650 -8.34360 -6.24943 -4.32713 1.45963 2.69952 2.91924 3.19257 3.24527 3.27488 3.57053 3.61353 4.17651 4.27122 4.40434 4.48698 4.59173 4.87982 5.02008 5.05624 5.08424 5.17476 5.35342 5.40220 5.54962 5.57166 5.65997 5.76688 5.80668 5.91505 5.96898 6.05782 6.25959 6.56216 6.66367 6.82506 6.84638 7.03977 7.17922 7.50871 7.65016 7.84611 8.01692 8.05390 8.53250 8.78128 9.32835 10.82466 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.005159 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.541374 B = 5425.865057 C = 6381.773088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.217 3.783 3 H 0.048 0.952 4 C -0.522 4.522 5 H 0.067 0.933 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.272 1.272 12 O -0.358 6.358 13 C 0.531 3.469 14 O -0.506 6.506 15 C -0.064 4.064 16 C 0.062 3.938 17 N -0.500 5.500 18 C 0.228 3.772 19 N -0.421 5.421 20 C 0.095 3.905 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.124 4.124 24 C -0.037 4.037 25 H 0.100 0.900 26 H 0.017 0.983 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.184 0.816 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -11.936 -12.647 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.165 3.835 3 H 0.066 0.934 4 C -0.560 4.560 5 H 0.085 0.915 6 C -0.139 4.139 7 N -0.524 5.524 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.197 1.197 12 O -0.275 6.275 13 C 0.374 3.626 14 O -0.395 6.395 15 C -0.179 4.179 16 C -0.092 4.092 17 N -0.219 5.219 18 C -0.034 4.034 19 N -0.103 5.103 20 C -0.027 4.027 21 C -0.178 4.178 22 C -0.162 4.162 23 C -0.163 4.163 24 C -0.076 4.076 25 H 0.119 0.881 26 H 0.036 0.964 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.201 0.799 30 H 0.135 0.865 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.549 -11.454 -13.069 17.963 hybrid contribution -0.148 -0.267 1.824 1.849 sum 4.401 -11.720 -11.245 16.828 Atomic orbital electron populations 1.22160 0.97450 1.00067 1.01541 1.20687 0.91430 0.94060 0.77362 0.93391 1.20963 1.32717 1.13530 0.88819 0.91460 1.24881 0.94856 0.95082 0.99052 1.69894 1.35794 1.22435 1.24286 0.86278 0.78623 0.79785 0.81462 1.20363 1.20883 1.19653 1.86553 1.76248 1.43309 1.21344 1.19514 0.74939 0.85051 0.83055 1.90842 1.49161 1.15321 1.84213 1.20496 1.16310 0.84116 0.96933 1.22575 0.99507 0.99634 0.87473 1.70151 1.21593 0.98246 1.31883 1.23371 1.01442 0.96694 0.81890 1.45475 1.46083 1.07375 1.11362 1.22285 1.01125 0.86521 0.92742 1.22038 0.98572 0.95917 1.01265 1.21631 1.01422 0.97948 0.95204 1.21611 0.99258 0.97422 0.97969 1.20248 0.99244 0.86865 1.01217 0.88143 0.96433 0.94517 0.92295 0.79928 0.86475 0.89289 0.90261 0.89247 0.91124 0.91157 0.90397 0.91507 0.88457 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.87 9.33 37.15 0.35 -3.52 16 2 C 0.22 5.71 2.57 -27.88 -0.07 5.64 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 4 C -0.52 -14.18 8.90 -34.43 -0.31 -14.49 16 5 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 12 O -0.36 -8.31 7.51 -40.96 -0.31 -8.62 16 13 C 0.53 11.72 7.90 34.10 0.27 11.99 16 14 O -0.51 -12.39 16.17 -19.34 -0.31 -12.71 16 15 C -0.06 -1.19 6.91 -82.23 -0.57 -1.76 16 16 C 0.06 1.07 11.66 -17.45 -0.20 0.87 16 17 N -0.50 -8.11 11.20 -10.46 -0.12 -8.23 16 18 C 0.23 3.20 6.83 -155.38 -1.06 2.14 16 19 N -0.42 -6.49 3.10 -109.87 -0.34 -6.83 16 20 C 0.09 1.25 5.86 -4.04 -0.02 1.23 16 21 C -0.14 -1.32 5.55 -26.80 -0.15 -1.47 16 22 C -0.12 -0.92 5.68 -27.03 -0.15 -1.07 16 23 C -0.12 -0.98 5.67 -26.92 -0.15 -1.14 16 24 C -0.04 -0.35 5.54 -27.74 -0.15 -0.50 16 25 H 0.10 2.69 6.07 -51.93 -0.32 2.37 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 30 H 0.12 1.84 6.38 -51.93 -0.33 1.51 16 31 H 0.09 1.12 7.82 -51.93 -0.41 0.72 16 32 H 0.08 0.76 5.69 -51.93 -0.30 0.46 16 33 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.73 6.30 -51.93 -0.33 0.40 16 LS Contribution 316.24 15.07 4.77 4.77 Total: -1.00 -31.11 316.24 -8.41 -39.52 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.38 Total: 1.19 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.32 Total: -0.46 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.17 Total: -39.20 kcal Atomic # 8 Polarization: -20.71 SS G_CDS: -0.62 Total: -21.33 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.11 -8.41 -39.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341955107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.725 kcal (2) G-P(sol) polarization free energy of solvation -31.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds