Wall clock time and date at job start Tue Mar 31 2020 00:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47648 * 2 1 4 4 C 1.50708 * 109.47096 * 120.00229 * 2 1 3 5 5 H 1.07995 * 120.00082 * 119.99939 * 4 2 1 6 6 C 1.37881 * 119.99537 * 299.99986 * 4 2 1 7 7 N 1.31515 * 120.00200 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99770 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47288 * 89.99500 * 8 6 4 10 10 H 1.48502 * 109.47202 * 209.99910 * 8 6 4 11 11 H 1.48502 * 109.47051 * 330.00111 * 8 6 4 12 12 O 1.45207 * 109.47260 * 239.99726 * 2 1 3 13 13 C 1.34870 * 116.99593 * 90.00439 * 12 2 1 14 14 O 1.21604 * 120.00209 * 0.02562 * 13 12 2 15 15 C 1.46591 * 119.99941 * 180.02562 * 13 12 2 16 16 C 1.36776 * 126.89172 * 180.02562 * 15 13 12 17 17 N 1.33274 * 107.77680 * 179.67949 * 16 15 13 18 18 C 1.30983 * 109.77569 * 359.85382 * 17 16 15 19 19 N 1.34509 * 108.96579 * 0.51993 * 18 17 16 20 20 C 1.46467 * 126.54398 * 178.95624 * 19 18 17 21 21 C 1.53038 * 109.56697 * 28.22125 * 20 19 18 22 22 C 1.52829 * 109.60778 * 270.60658 * 21 20 19 23 23 C 1.52580 * 110.29848 * 61.23813 * 22 21 20 24 24 C 1.50937 * 125.83623 * 181.03734 * 18 17 16 25 25 H 1.08999 * 109.47271 * 300.00122 * 1 2 3 26 26 H 1.08997 * 109.47017 * 60.00109 * 1 2 3 27 27 H 1.08999 * 109.47648 * 179.97438 * 1 2 3 28 28 H 0.96996 * 119.99710 * 179.97438 * 7 6 4 29 29 H 1.08000 * 126.11540 * 359.93678 * 16 15 13 30 30 H 1.09001 * 109.45622 * 148.24796 * 20 19 18 31 31 H 1.09001 * 109.45904 * 268.20489 * 20 19 18 32 32 H 1.08990 * 109.45221 * 30.64691 * 21 20 19 33 33 H 1.09006 * 109.44769 * 150.56767 * 21 20 19 34 34 H 1.08998 * 109.33797 * 181.49678 * 22 21 20 35 35 H 1.09005 * 109.33078 * 300.98615 * 22 21 20 36 36 H 1.08999 * 109.45750 * 153.43758 * 23 22 21 37 37 H 1.08999 * 109.45572 * 273.40055 * 23 22 21 38 38 H 1.09000 * 109.50809 * 346.38658 * 24 18 17 39 39 H 1.09000 * 109.50555 * 106.51168 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.6304 -0.5441 4.4119 10 1 1.3443 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7122 12 8 2.0140 -0.6846 -1.1856 13 6 2.2182 0.0675 -2.2863 14 8 1.9979 1.2631 -2.2553 15 6 2.7056 -0.5562 -3.5201 16 6 2.9603 0.0676 -4.7104 17 7 3.3931 -0.8552 -5.5690 18 6 3.4272 -2.0255 -4.9818 19 7 3.0008 -1.8908 -3.7133 20 6 2.8648 -2.9592 -2.7207 21 6 3.8727 -4.0705 -3.0226 22 6 3.2439 -5.0890 -3.9728 23 6 2.8701 -4.4210 -5.2927 24 6 3.8818 -3.3185 -5.6141 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7088 1.1613 3.4844 29 1 2.8372 1.1206 -4.9163 30 1 3.0552 -2.5569 -1.7257 31 1 1.8541 -3.3655 -2.7607 32 1 4.7595 -3.6398 -3.4874 33 1 4.1549 -4.5667 -2.0939 34 1 3.9559 -5.8920 -4.1638 35 1 2.3480 -5.5063 -3.5131 36 1 2.8770 -5.1638 -6.0904 37 1 1.8739 -3.9862 -5.2102 38 1 3.9503 -3.1911 -6.6944 39 1 4.8587 -3.5942 -5.2168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341955107.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:41 Heat of formation + Delta-G solvation = -58.616410 kcal Electronic energy + Delta-G solvation = -22213.758555 eV Core-core repulsion = 18928.172504 eV Total energy + Delta-G solvation = -3285.586051 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.57609 -41.05263 -38.33525 -37.55619 -35.44697 -34.80068 -32.01327 -31.79584 -30.58523 -27.50885 -27.23534 -25.71907 -24.88215 -22.79281 -21.56312 -20.89102 -20.86036 -19.08290 -18.56839 -17.75722 -17.49316 -16.78230 -16.55624 -16.32325 -16.01663 -15.75414 -14.98975 -14.87466 -14.56221 -14.30890 -14.06714 -13.82233 -13.70029 -13.27090 -13.12288 -12.89008 -12.84058 -12.58107 -12.42339 -12.18777 -11.92144 -11.76395 -11.72103 -11.66727 -11.43178 -11.25153 -11.02636 -10.76642 -10.63743 -9.67306 -8.31122 -6.48617 0.01425 1.39832 1.42882 1.47032 1.54571 1.58481 1.88762 2.03764 2.38472 3.00161 3.19861 3.47774 3.60180 3.76749 3.90443 4.10331 4.20518 4.26053 4.29891 4.38149 4.48056 4.62289 4.73833 4.76798 4.80015 4.85258 4.90709 5.01874 5.05612 5.08482 5.20438 5.32071 5.36089 5.41068 5.42781 5.54964 5.82090 5.97097 6.03317 6.53725 6.71797 6.83722 7.22499 8.76915 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.005159 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.541374 B = 5425.865057 C = 6381.773088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.219 3.781 3 H 0.007 0.993 4 C -0.545 4.545 5 H 0.071 0.929 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.259 1.259 12 O -0.353 6.353 13 C 0.530 3.470 14 O -0.541 6.541 15 C -0.103 4.103 16 C 0.073 3.927 17 N -0.518 5.518 18 C 0.250 3.750 19 N -0.422 5.422 20 C 0.090 3.910 21 C -0.133 4.133 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.038 4.038 25 H 0.083 0.917 26 H 0.019 0.981 27 H 0.047 0.953 28 H 0.271 0.729 29 H 0.191 0.809 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.113 0.887 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -15.112 -13.454 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.166 3.834 3 H 0.025 0.975 4 C -0.582 4.582 5 H 0.089 0.911 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.183 1.183 12 O -0.270 6.270 13 C 0.376 3.624 14 O -0.433 6.433 15 C -0.216 4.216 16 C -0.083 4.083 17 N -0.238 5.238 18 C -0.012 4.012 19 N -0.104 5.104 20 C -0.031 4.031 21 C -0.171 4.171 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.077 4.077 25 H 0.101 0.899 26 H 0.039 0.961 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.208 0.792 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.064 0.936 38 H 0.131 0.869 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.745 -14.656 -13.888 20.993 hybrid contribution -0.492 0.721 1.947 2.134 sum 5.253 -13.935 -11.941 19.089 Atomic orbital electron populations 1.21984 0.96695 1.00454 1.00774 1.20430 0.92033 0.92197 0.78742 0.97543 1.21228 1.33517 1.13976 0.89513 0.91101 1.25843 0.94641 0.95642 1.02172 1.70021 1.36476 1.23661 1.25301 0.85166 0.78024 0.79056 0.77074 1.19926 1.20156 1.18276 1.86565 1.76447 1.42851 1.21112 1.20045 0.74106 0.84816 0.83477 1.90807 1.50989 1.16721 1.84773 1.20130 1.19624 0.86121 0.95758 1.22830 0.97989 1.00372 0.87066 1.70238 1.22742 0.98900 1.31877 1.24447 0.98050 0.97771 0.80974 1.45644 1.45865 1.06530 1.12320 1.22446 1.02789 0.86894 0.90935 1.22066 0.97422 0.94921 1.02647 1.21633 1.02115 0.97740 0.94176 1.21622 0.97494 0.97374 0.99328 1.20598 1.00562 0.84644 1.01859 0.89859 0.96146 0.93380 0.91948 0.79181 0.89555 0.89004 0.90036 0.88070 0.88350 0.90928 0.87413 0.93555 0.86884 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.34 9.33 71.98 0.67 -6.67 16 2 C 0.22 12.07 2.57 29.85 0.08 12.15 16 3 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 4 C -0.54 -30.24 8.90 25.60 0.23 -30.01 16 5 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 6 C 0.02 0.92 5.30 84.66 0.45 1.36 16 7 N -0.92 -52.28 11.32 21.45 0.24 -52.03 16 8 Si 0.98 41.84 29.54 68.60 2.03 43.86 16 9 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 10 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 11 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 12 O -0.35 -17.19 7.51 -57.84 -0.43 -17.63 16 13 C 0.53 24.60 7.90 70.00 0.55 25.16 16 14 O -0.54 -28.14 16.17 19.50 0.32 -27.82 16 15 C -0.10 -3.91 6.91 40.00 0.28 -3.64 16 16 C 0.07 2.53 11.66 84.13 0.98 3.51 16 17 N -0.52 -16.27 11.20 -187.01 -2.09 -18.36 16 18 C 0.25 6.58 6.83 138.23 0.94 7.52 16 19 N -0.42 -12.86 3.10 -501.53 -1.55 -14.41 16 20 C 0.09 2.34 5.86 86.40 0.51 2.84 16 21 C -0.13 -2.15 5.55 30.55 0.17 -1.98 16 22 C -0.12 -1.28 5.68 30.40 0.17 -1.11 16 23 C -0.12 -1.43 5.67 30.47 0.17 -1.26 16 24 C -0.04 -0.57 5.54 29.94 0.17 -0.41 16 25 H 0.08 4.62 6.07 -2.39 -0.01 4.60 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.30 16 28 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 29 H 0.19 6.07 8.06 -2.91 -0.02 6.04 16 30 H 0.09 2.79 6.38 -2.39 -0.02 2.77 16 31 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 32 H 0.08 1.29 5.69 -2.39 -0.01 1.28 16 33 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.80 8.09 -2.38 -0.02 0.78 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.76 7.84 -2.39 -0.02 0.75 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 1.30 6.30 -2.39 -0.02 1.28 16 Total: -1.00 -69.93 316.24 4.92 -65.00 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.06 Total: 13.91 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.37 Total: 7.48 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -3.41 Total: -84.80 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.12 Total: -45.45 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.93 4.92 -65.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341955107.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.387 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds