Wall clock time and date at job start Tue Mar 31 2020 00:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 O 1.20818 * 119.99756 * 0.02562 * 5 4 2 7 7 O 1.34232 * 119.99708 * 180.02562 * 5 4 2 8 8 C 1.45200 * 116.99602 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47479 * 329.99955 * 8 7 5 10 10 C 1.50703 * 109.47170 * 209.99760 * 8 7 5 11 11 H 1.07997 * 119.99487 * 0.02562 * 10 8 7 12 12 C 1.37878 * 120.00098 * 180.02562 * 10 8 7 13 13 N 1.31515 * 119.99752 * 0.02562 * 12 10 8 14 14 Si 1.86794 * 120.00121 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47312 * 89.99813 * 14 12 10 16 16 H 1.48498 * 109.47400 * 209.99787 * 14 12 10 17 17 H 1.48504 * 109.46962 * 330.00185 * 14 12 10 18 18 C 1.53007 * 109.46936 * 90.00003 * 8 7 5 19 19 C 1.52991 * 117.50064 * 8.74634 * 18 8 7 20 20 C 1.52998 * 117.49916 * 300.08158 * 18 8 7 21 21 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 22 22 C 1.36880 * 126.40130 * 239.99974 * 21 2 1 23 23 C 1.34673 * 106.81852 * 179.97438 * 22 21 2 24 24 N 1.34121 * 108.02167 * 0.02562 * 23 22 21 25 25 C 1.30502 * 109.25876 * 359.71944 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 30 30 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 31 31 H 0.97008 * 119.99855 * 180.02562 * 13 12 10 32 32 H 1.09002 * 115.54622 * 154.41710 * 18 8 7 33 33 H 1.09004 * 117.50121 * 0.02562 * 19 18 8 34 34 H 1.09002 * 117.50123 * 145.02147 * 19 18 8 35 35 H 1.08999 * 117.50023 * 214.98028 * 20 18 8 36 36 H 1.09005 * 117.49728 * 0.02562 * 20 18 8 37 37 H 1.07994 * 126.59134 * 0.04048 * 22 21 2 38 38 H 1.08007 * 125.98799 * 180.02562 * 23 22 21 39 39 H 1.07998 * 125.65510 * 180.28864 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 8 1.0141 1.0835 -2.3636 7 8 1.9832 -0.3902 -3.6951 8 6 1.5651 0.4103 -4.8322 9 1 0.6366 0.9276 -4.5907 10 6 1.3457 -0.4858 -6.0238 11 1 1.5041 -1.5504 -5.9352 12 6 0.9426 0.0535 -7.2270 13 7 0.7502 1.3500 -7.3349 14 14 0.6699 -1.0572 -8.7039 15 1 -0.7412 -1.5193 -8.7219 16 1 0.9600 -0.3039 -9.9502 17 1 1.5742 -2.2318 -8.6135 18 6 2.6509 1.4374 -5.1596 19 6 3.9875 1.3106 -4.4261 20 6 3.0228 2.4442 -4.0692 21 7 2.0183 -0.6905 1.1962 22 6 2.8084 -0.1552 2.1774 23 6 3.0181 -1.1293 3.0835 24 7 2.3741 -2.2294 2.6666 25 6 1.7683 -1.9725 1.5396 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 3.1263 -0.7994 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 0.4663 1.7295 -8.1813 32 1 2.6747 1.7831 -6.1930 33 1 4.0937 0.4952 -3.7105 34 1 4.8908 1.5732 -4.9768 35 1 3.2917 3.4521 -4.3853 36 1 2.4941 2.3746 -3.1184 37 1 3.1895 0.8544 2.2178 38 1 3.6025 -1.0401 3.9874 39 1 1.1685 -2.6701 0.9740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346708131.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:23 Heat of formation + Delta-G solvation = -0.843056 kcal Electronic energy + Delta-G solvation = -21821.243529 eV Core-core repulsion = 18538.162719 eV Total energy + Delta-G solvation = -3283.080810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.17365 -40.09055 -37.13207 -35.56994 -34.83560 -32.90819 -31.12249 -29.37688 -28.71399 -27.53667 -23.90538 -23.20409 -21.60659 -21.45744 -21.08810 -19.99539 -19.08514 -17.69751 -16.99422 -16.37858 -16.29461 -15.52699 -15.22862 -14.78390 -14.59964 -14.14994 -13.90359 -13.80763 -13.43474 -13.09885 -12.90977 -12.55943 -12.11023 -11.74069 -11.62504 -11.45146 -11.38822 -11.18973 -11.02369 -10.66931 -10.39315 -10.18992 -10.04099 -9.90650 -9.70770 -9.60618 -9.23484 -8.64548 -8.59016 -8.54197 -6.28177 -4.35894 1.98647 2.53699 2.69834 3.12223 3.18780 3.25165 3.28323 3.53989 4.24848 4.29499 4.56851 4.65124 4.78412 4.82393 4.89966 5.04634 5.27878 5.35838 5.38226 5.47019 5.56199 5.66510 5.70614 5.74407 5.96799 6.02418 6.07671 6.24427 6.35164 6.56070 6.66340 6.74083 6.88729 7.06365 7.10410 7.44276 7.47571 7.71734 7.99499 8.01052 8.41706 8.74545 9.29174 10.78839 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028486 B = 0.004034 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.712731 B = 6939.730900 C = 7323.969145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.146 3.854 3 H 0.111 0.889 4 C -0.130 4.130 5 C 0.460 3.540 6 O -0.513 6.513 7 O -0.348 6.348 8 C 0.249 3.751 9 H 0.054 0.946 10 C -0.521 4.521 11 H 0.070 0.930 12 C 0.065 3.935 13 N -0.884 5.884 14 Si 0.910 3.090 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.271 1.271 18 C -0.116 4.116 19 C -0.195 4.195 20 C -0.210 4.210 21 N -0.452 5.452 22 C -0.054 4.054 23 C -0.035 4.035 24 N -0.499 5.499 25 C 0.183 3.817 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.267 0.733 32 H 0.130 0.870 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.172 0.828 38 H 0.167 0.833 39 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -1.500 13.082 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.043 3.957 3 H 0.129 0.871 4 C -0.168 4.168 5 C 0.302 3.698 6 O -0.404 6.404 7 O -0.263 6.263 8 C 0.197 3.803 9 H 0.072 0.928 10 C -0.559 4.559 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.521 5.521 14 Si 0.737 3.263 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.195 1.195 18 C -0.135 4.135 19 C -0.232 4.232 20 C -0.247 4.247 21 N -0.134 5.134 22 C -0.188 4.188 23 C -0.183 4.183 24 N -0.217 5.217 25 C -0.100 4.100 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.148 0.852 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.190 0.810 38 H 0.185 0.815 39 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.393 -1.726 13.194 13.520 hybrid contribution -0.020 0.530 -1.311 1.415 sum 2.373 -1.196 11.883 12.177 Atomic orbital electron populations 1.22327 0.92141 1.03266 1.04888 1.21211 0.96449 0.96919 0.81103 0.87135 1.21650 1.04366 1.00815 0.90018 1.22833 0.76787 0.83976 0.86199 1.90580 1.37853 1.24512 1.87455 1.86505 1.71023 1.53862 1.14952 1.20199 0.92782 0.88179 0.79157 0.92833 1.20940 1.47088 0.94361 0.93510 0.91133 1.24900 0.94713 0.95441 0.98729 1.69975 1.45260 1.10529 1.26386 0.86296 0.78748 0.80257 0.81017 1.20338 1.20913 1.19519 1.23038 0.94413 0.97757 0.98284 1.22802 0.94623 1.00638 1.05120 1.23150 1.05010 0.94383 1.02131 1.45779 1.37734 1.11574 1.18334 1.22784 1.02404 1.01358 0.92205 1.22277 1.04960 0.89641 1.01413 1.70298 1.12462 1.28160 1.10756 1.24919 1.03698 0.85499 0.95856 0.91956 0.88069 0.91808 0.87506 0.87288 0.92312 0.85191 0.89924 0.90341 0.90460 0.88912 0.81032 0.81544 0.78170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.98 37.16 0.33 -1.54 16 2 C 0.15 1.63 2.70 -67.94 -0.18 1.45 16 3 H 0.11 1.26 7.90 -51.93 -0.41 0.85 16 4 C -0.13 -1.61 5.29 -27.88 -0.15 -1.76 16 5 C 0.46 8.09 6.62 36.01 0.24 8.32 16 6 O -0.51 -9.94 11.02 -18.74 -0.21 -10.15 16 7 O -0.35 -7.41 8.38 -39.26 -0.33 -7.74 16 8 C 0.25 6.17 2.41 -27.88 -0.07 6.10 16 9 H 0.05 1.47 7.16 -51.93 -0.37 1.10 16 10 C -0.52 -13.82 8.90 -34.44 -0.31 -14.13 16 11 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 12 C 0.07 1.71 5.20 -17.82 -0.09 1.62 16 13 N -0.88 -23.99 11.59 55.43 0.64 -23.35 16 14 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 C -0.12 -2.73 5.27 -90.62 -0.48 -3.20 16 19 C -0.19 -3.88 9.80 -26.70 -0.26 -4.14 16 20 C -0.21 -4.29 9.85 -26.69 -0.26 -4.55 16 21 N -0.45 -4.97 2.62 -111.46 -0.29 -5.27 16 22 C -0.05 -0.57 11.54 -16.56 -0.19 -0.76 16 23 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 24 N -0.50 -6.70 11.25 -14.66 -0.16 -6.87 16 25 C 0.18 2.11 11.65 -90.36 -1.05 1.06 16 26 H 0.06 0.61 7.94 -51.93 -0.41 0.20 16 27 H 0.10 1.36 5.96 -51.93 -0.31 1.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.11 1.18 8.08 -51.93 -0.42 0.76 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.13 3.36 6.46 -51.93 -0.34 3.03 16 33 H 0.08 1.59 6.91 -51.93 -0.36 1.23 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.09 1.90 5.37 -51.93 -0.28 1.62 16 37 H 0.17 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 324.43 15.07 4.89 4.89 Total: -1.00 -29.65 324.43 -8.57 -38.21 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.40 Total: 7.19 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -2.68 Total: -12.15 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.19 Total: -35.48 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.54 Total: -17.89 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.65 -8.57 -38.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346708131.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.370 kcal (2) G-P(sol) polarization free energy of solvation -29.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds